Wall clock time and date at job start Tue Mar 31 2020 23:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35721 * 117.00145 * 2 1 4 4 C 1.39355 * 120.35912 * 0.02562 * 3 2 1 5 5 N 1.31290 * 120.88237 * 180.02562 * 4 3 2 6 6 C 1.32881 * 121.71764 * 359.97438 * 5 4 3 7 7 C 1.47758 * 119.69005 * 179.97438 * 6 5 4 8 8 O 1.21566 * 120.00720 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99724 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99861 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47357 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.51076 * 305.10676 * 11 10 9 13 13 C 1.53297 * 109.51837 * 184.99928 * 11 10 9 14 14 N 1.47150 * 108.38389 * 187.72271 * 13 11 10 15 15 C 1.36938 * 120.97958 * 230.51296 * 14 13 11 16 16 H 1.07996 * 119.99416 * 153.64134 * 15 14 13 17 17 C 1.38805 * 119.99903 * 333.91044 * 15 14 13 18 18 N 1.31622 * 120.00630 * 342.82560 * 17 15 14 19 19 Si 1.86809 * 119.99701 * 162.82502 * 17 15 14 20 20 H 1.48500 * 109.47242 * 60.00087 * 19 17 15 21 21 H 1.48498 * 109.46878 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46785 * 300.00268 * 19 17 15 23 23 C 1.47153 * 118.03738 * 50.79398 * 14 13 11 24 24 C 1.53716 * 108.15464 * 309.15395 * 23 14 13 25 25 O 1.42954 * 109.15071 * 52.53895 * 24 23 14 26 26 C 1.39721 * 120.62759 * 0.26267 * 6 5 4 27 27 F 1.35105 * 120.46731 * 179.73935 * 26 6 5 28 28 C 1.38688 * 119.06375 * 359.48690 * 26 6 5 29 29 H 1.09008 * 109.46762 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46998 * 299.99914 * 1 2 3 31 31 H 1.08998 * 109.46581 * 60.00184 * 1 2 3 32 32 H 1.08003 * 119.56013 * 359.97438 * 4 3 2 33 33 H 0.96999 * 120.00134 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.47272 * 60.00630 * 10 9 7 35 35 H 1.08998 * 109.47580 * 300.00053 * 10 9 7 36 36 H 1.09001 * 109.67341 * 67.99955 * 13 11 10 37 37 H 1.08995 * 109.70996 * 307.47198 * 13 11 10 38 38 H 0.96992 * 120.00430 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.68585 * 68.92759 * 23 14 13 40 40 H 1.08997 * 109.68117 * 189.48802 * 23 14 13 41 41 H 1.09001 * 109.66024 * 292.56678 * 24 23 14 42 42 H 1.09005 * 109.48103 * 172.40478 * 24 23 14 43 43 H 1.08000 * 120.78487 * 180.24293 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3827 0.0005 5 7 1.8790 3.5579 0.0000 6 6 3.2022 3.6793 -0.0005 7 6 3.8138 5.0243 -0.0016 8 8 5.0238 5.1420 -0.0026 9 7 3.0302 6.1209 -0.0016 10 6 3.6365 7.4545 -0.0021 11 6 2.5344 8.5158 -0.0026 12 1 1.8624 8.3424 -0.8431 13 6 3.1640 9.9078 -0.1291 14 7 2.1071 10.9141 0.0596 15 6 1.9371 11.9345 -0.8377 16 1 0.9671 12.3947 -0.9546 17 6 3.0101 12.3735 -1.6009 18 7 4.2398 12.0670 -1.2454 19 14 2.7090 13.3996 -3.1327 20 1 1.9989 14.6493 -2.7597 21 1 4.0093 13.7383 -3.7650 22 1 1.8794 12.6261 -4.0913 23 6 1.2422 10.7951 1.2442 24 6 0.7029 9.3568 1.3009 25 8 1.7982 8.4417 1.2206 26 6 4.0209 2.5470 -0.0060 27 9 5.3659 2.6742 -0.0118 28 6 3.4333 1.2908 -0.0001 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 0.2152 2.3247 0.0005 33 1 2.0647 6.0271 -0.0004 34 1 4.2542 7.5724 -0.8925 35 1 4.2550 7.5729 0.8876 36 1 3.6070 10.0217 -1.1185 37 1 3.9321 10.0346 0.6338 38 1 4.9896 12.3735 -1.7790 39 1 1.8198 11.0093 2.1434 40 1 0.4121 11.4969 1.1646 41 1 0.0241 9.1865 0.4652 42 1 0.1698 9.2052 2.2395 43 1 4.0395 0.3970 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035394215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:43 Heat of formation + Delta-G solvation = -116.082383 kcal Electronic energy + Delta-G solvation = -29107.756346 eV Core-core repulsion = 24682.352545 eV Total energy + Delta-G solvation = -4425.403801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.18497 -41.97011 -40.80185 -39.98667 -38.97696 -36.48490 -35.91235 -33.63365 -33.24371 -32.64200 -31.57622 -29.10883 -28.51652 -27.37301 -25.68620 -25.05452 -24.25681 -23.25062 -22.08482 -21.38221 -19.71971 -19.32906 -19.03177 -18.71894 -17.59241 -17.39173 -17.36041 -17.15536 -16.76983 -16.60903 -16.34194 -16.09129 -15.93644 -15.69131 -15.51201 -15.11127 -15.01509 -14.60641 -14.51696 -14.36962 -14.32466 -13.88404 -13.71151 -13.19430 -12.99664 -12.92326 -12.64564 -12.53650 -12.50613 -12.20055 -12.12634 -11.88591 -11.52912 -11.30105 -10.91112 -10.76988 -10.75417 -10.54354 -10.27313 -9.70507 -8.75626 -7.91025 -5.38847 -0.67540 -0.21204 1.46588 1.49229 1.51062 1.56277 1.78133 1.96872 2.47810 2.48550 2.77692 2.87080 2.96385 3.23452 3.33178 3.47933 3.54314 3.72796 3.99312 4.02671 4.07040 4.24728 4.39575 4.41475 4.44586 4.45542 4.51990 4.56926 4.66871 4.69976 4.80429 4.83519 4.96589 5.06986 5.12034 5.22737 5.26855 5.52269 5.59893 5.96305 6.23272 6.26491 6.32904 6.52284 7.03045 7.05239 7.74253 8.28283 9.14706 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.002391 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.250488 B =11708.223520 C =12319.037319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.306 6.306 3 C 0.149 3.851 4 C 0.021 3.979 5 N -0.400 5.400 6 C -0.016 4.016 7 C 0.564 3.436 8 O -0.568 6.568 9 N -0.689 5.689 10 C 0.141 3.859 11 C 0.078 3.922 12 H 0.065 0.935 13 C 0.160 3.840 14 N -0.614 5.614 15 C -0.267 4.267 16 H 0.075 0.925 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.273 1.273 21 H -0.296 1.296 22 H -0.275 1.275 23 C 0.102 3.898 24 C 0.057 3.943 25 O -0.391 6.391 26 C 0.140 3.860 27 F -0.116 7.116 28 C -0.158 4.158 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.212 0.788 33 H 0.419 0.581 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.001 0.999 38 H 0.252 0.748 39 H 0.016 0.984 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.121 0.879 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.170 -26.991 2.723 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.216 6.216 3 C 0.099 3.901 4 C -0.144 4.144 5 N -0.112 5.112 6 C -0.153 4.153 7 C 0.350 3.650 8 O -0.447 6.447 9 N -0.340 5.340 10 C 0.017 3.983 11 C 0.018 3.982 12 H 0.083 0.917 13 C 0.033 3.967 14 N -0.339 5.339 15 C -0.396 4.396 16 H 0.093 0.907 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.199 1.199 21 H -0.222 1.222 22 H -0.201 1.201 23 C -0.023 4.023 24 C -0.021 4.021 25 O -0.310 6.310 26 C 0.117 3.883 27 F -0.094 7.094 28 C -0.184 4.184 29 H 0.146 0.854 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.228 0.772 33 H 0.257 0.743 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.019 0.981 38 H 0.061 0.939 39 H 0.034 0.966 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.139 0.861 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -11.492 -26.350 2.800 28.883 hybrid contribution 0.654 0.599 -0.836 1.219 sum -10.838 -25.751 1.964 28.007 Atomic orbital electron populations 1.23699 0.74511 1.07000 1.03668 1.86100 1.24871 1.24294 1.86350 1.20023 0.91686 0.86859 0.91573 1.23707 1.02785 0.85375 1.02493 1.67465 1.08225 1.28526 1.06985 1.20835 0.90475 0.92668 1.11365 1.17965 0.85972 0.84283 0.76747 1.90835 1.14863 1.87037 1.51977 1.45613 1.11288 1.04480 1.72613 1.21206 0.94766 0.79885 1.02490 1.22737 0.93057 0.95002 0.87372 0.91715 1.21080 0.89637 0.85665 1.00334 1.44363 1.37143 1.28196 1.24159 1.19520 0.94196 1.11445 1.14481 0.90726 1.25865 0.94789 1.00595 1.03438 1.70176 0.98072 1.50413 1.39514 0.85291 0.76445 0.78796 0.79618 1.19904 1.22220 1.20102 1.21917 0.94474 0.97101 0.88852 1.23171 0.87725 0.88311 1.02878 1.87806 1.45395 1.59847 1.37981 1.18438 0.78058 0.93675 0.98097 1.91607 1.28539 1.96593 1.92640 1.20995 0.93854 0.97071 1.06515 0.85371 0.90254 0.90292 0.77159 0.74298 0.90256 0.91749 0.91372 0.98076 0.93923 0.96634 0.90776 0.92667 0.86132 0.79884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.80 10.50 -90.43 -0.95 -3.75 16 3 C 0.15 1.94 6.72 22.73 0.15 2.10 16 4 C 0.02 0.27 10.21 85.04 0.87 1.14 16 5 N -0.40 -8.55 9.52 -184.40 -1.76 -10.31 16 6 C -0.02 -0.44 6.75 41.86 0.28 -0.16 16 7 C 0.56 19.21 7.80 86.76 0.68 19.89 16 8 O -0.57 -23.38 15.30 -3.92 -0.06 -23.44 16 9 N -0.69 -22.14 5.50 -466.05 -2.56 -24.71 16 10 C 0.14 5.17 5.35 86.38 0.46 5.63 16 11 C 0.08 3.03 2.81 30.69 0.09 3.12 16 12 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 13 C 0.16 7.87 4.73 86.35 0.41 8.28 16 14 N -0.61 -31.07 3.04 -696.75 -2.12 -33.19 16 15 C -0.27 -14.54 9.65 84.03 0.81 -13.73 16 16 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 17 C -0.05 -2.86 4.94 84.86 0.42 -2.44 16 18 N -0.94 -55.84 11.15 21.65 0.24 -55.59 16 19 Si 0.97 44.56 29.59 68.60 2.03 46.59 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.10 4.17 6.76 86.50 0.58 4.75 16 24 C 0.06 1.85 7.00 72.22 0.51 2.36 16 25 O -0.39 -14.39 10.34 -148.98 -1.54 -15.93 16 26 C 0.14 3.44 7.31 22.74 0.17 3.61 16 27 F -0.12 -3.41 15.54 44.97 0.70 -2.71 16 28 C -0.16 -2.61 10.10 22.57 0.23 -2.38 16 29 H 0.13 -0.32 8.14 -2.38 -0.02 -0.34 16 30 H 0.08 -0.09 7.67 -2.39 -0.02 -0.11 16 31 H 0.08 -0.09 7.67 -2.39 -0.02 -0.11 16 32 H 0.21 1.04 6.31 -2.91 -0.02 1.02 16 33 H 0.42 11.92 7.79 -92.71 -0.72 11.20 16 34 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.07 3.73 6.14 -2.39 -0.01 3.72 16 37 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 2.81 7.96 -2.39 -0.02 2.79 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 43 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -75.41 364.66 1.08 -74.32 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.34 Total: 15.44 kcal Atomic # 6 Polarization: 26.51 SS G_CDS: 6.76 Total: 33.27 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -6.20 Total: -123.80 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -2.55 Total: -43.12 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.70 Total: -2.71 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.41 1.08 -74.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035394215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.759 kcal (2) G-P(sol) polarization free energy of solvation -75.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds