Wall clock time and date at job start Tue Mar 31 2020 23:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00454 * 2 1 4 4 C 1.46905 * 111.00056 * 123.95244 * 2 1 3 5 5 C 1.50702 * 109.47113 * 66.04473 * 4 2 1 6 6 C 1.37469 * 123.35198 * 260.22299 * 5 4 2 7 7 C 1.33813 * 115.10279 * 180.29460 * 6 5 4 8 8 S 1.70620 * 110.95388 * 359.72085 * 7 6 5 9 9 C 1.36651 * 123.35263 * 79.99934 * 5 4 2 10 10 C 1.46583 * 125.45465 * 0.02562 * 9 5 4 11 11 O 1.21698 * 120.00532 * 359.71822 * 10 9 5 12 12 N 1.34778 * 119.99759 * 179.72008 * 10 9 5 13 13 C 1.46500 * 119.99895 * 180.02562 * 12 10 9 14 14 H 1.08995 * 110.88700 * 37.42256 * 13 12 10 15 15 C 1.54906 * 111.00040 * 273.53973 * 13 12 10 16 16 N 1.47427 * 104.83302 * 204.87855 * 15 13 12 17 17 C 1.36934 * 125.64760 * 204.09847 * 16 15 13 18 18 H 1.07997 * 120.00239 * 351.28229 * 17 16 15 19 19 C 1.38817 * 119.99822 * 171.29239 * 17 16 15 20 20 N 1.31620 * 120.00015 * 164.58539 * 19 17 16 21 21 Si 1.86799 * 119.99835 * 344.30666 * 19 17 16 22 22 H 1.48494 * 109.47004 * 185.79088 * 21 19 17 23 23 H 1.48506 * 109.47205 * 305.78771 * 21 19 17 24 24 H 1.48497 * 109.47199 * 65.79030 * 21 19 17 25 25 C 1.47018 * 108.70103 * 24.35915 * 16 15 13 26 26 C 1.54334 * 107.26557 * 358.58635 * 25 16 15 27 27 H 1.08997 * 110.51440 * 96.45485 * 26 25 16 28 28 O 1.42900 * 110.84784 * 219.67305 * 26 25 16 29 29 H 1.08998 * 109.46696 * 296.04962 * 1 2 3 30 30 H 1.08997 * 109.46711 * 56.04382 * 1 2 3 31 31 H 1.08991 * 109.47091 * 176.04812 * 1 2 3 32 32 H 1.08996 * 109.47502 * 183.95572 * 3 2 1 33 33 H 1.09003 * 109.46882 * 303.95244 * 3 2 1 34 34 H 1.09001 * 109.47059 * 63.94960 * 3 2 1 35 35 H 1.08999 * 109.46899 * 306.04741 * 4 2 1 36 36 H 1.08993 * 109.47118 * 186.04447 * 4 2 1 37 37 H 1.08006 * 122.44877 * 359.97438 * 6 5 4 38 38 H 1.07999 * 124.52885 * 179.74972 * 7 6 5 39 39 H 0.96998 * 120.00232 * 359.97438 * 12 10 9 40 40 H 1.09006 * 110.36654 * 86.04165 * 15 13 12 41 41 H 1.08995 * 110.37324 * 323.72281 * 15 13 12 42 42 H 0.97003 * 119.99843 * 355.00480 * 20 19 17 43 43 H 1.09003 * 109.88444 * 118.12847 * 25 16 15 44 44 H 1.09007 * 109.88372 * 239.29491 * 25 16 15 45 45 H 0.96699 * 114.00067 * 293.69057 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9730 6 6 0.5822 -2.8170 1.6221 7 6 0.4172 -4.1188 1.3598 8 16 1.5952 -4.6731 0.2571 9 6 2.3252 -3.0765 0.1601 10 6 3.4897 -2.7220 -0.6566 11 8 3.9146 -1.5817 -0.6481 12 7 4.0899 -3.6591 -1.4169 13 6 5.2541 -3.3050 -2.2327 14 1 5.8922 -2.5922 -1.7106 15 6 4.8178 -2.7528 -3.6127 16 7 5.9626 -3.0158 -4.5036 17 6 6.2533 -2.3304 -5.6528 18 1 5.5465 -1.6167 -6.0495 19 6 7.4566 -2.5533 -6.3083 20 7 7.6168 -2.1415 -7.5481 21 14 8.8511 -3.4308 -5.4280 22 1 10.0628 -3.4196 -6.2862 23 1 9.1441 -2.7356 -4.1488 24 1 8.4549 -4.8345 -5.1491 25 6 6.7367 -4.1398 -3.9571 26 6 6.0529 -4.5706 -2.6422 27 1 5.3811 -5.4106 -2.8184 28 8 7.0248 -4.8988 -1.6473 29 1 -0.3633 0.4513 0.9233 30 1 -0.3632 0.5740 -0.8524 31 1 -0.3633 -1.0251 -0.0708 32 1 3.0828 1.3432 -0.0709 33 1 1.5899 1.9163 -0.8525 34 1 1.7045 1.8724 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6611 1.1756 37 1 -0.0629 -2.2759 2.2986 38 1 -0.3584 -4.7361 1.7884 39 1 3.7515 -4.5681 -1.4235 40 1 4.6249 -1.6818 -3.5489 41 1 3.9315 -3.2780 -3.9686 42 1 6.8717 -1.7475 -8.0283 43 1 6.7377 -4.9684 -4.6653 44 1 7.7593 -3.8217 -3.7540 45 1 7.5513 -5.6827 -1.8554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077076355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:27 Heat of formation + Delta-G solvation = -24.899556 kcal Electronic energy + Delta-G solvation = -27882.482081 eV Core-core repulsion = 24027.245440 eV Total energy + Delta-G solvation = -3855.236640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25012 -40.10785 -39.00287 -37.24629 -36.86422 -35.63899 -34.06785 -31.57595 -30.51307 -29.58133 -28.56659 -28.37374 -25.93096 -24.99254 -22.94515 -22.83134 -22.55194 -21.78018 -20.15558 -19.53747 -19.25169 -18.51566 -17.63807 -17.02852 -16.70012 -16.55628 -16.35088 -15.92172 -15.88379 -15.63760 -15.35177 -15.23578 -15.11981 -14.57338 -14.43842 -14.07012 -13.88049 -13.78877 -13.52460 -13.36530 -13.30508 -13.06395 -13.03847 -12.64765 -12.55246 -12.46652 -12.44378 -11.86678 -11.79504 -11.63692 -11.32007 -11.13076 -10.96473 -10.58552 -10.29815 -9.76044 -9.46945 -9.18331 -9.17719 -8.70253 -5.53286 -0.46629 0.51109 0.95000 1.34899 1.39257 1.51124 1.71676 1.94541 2.17132 2.52357 2.88500 3.13922 3.19283 3.25599 3.56263 3.71674 3.82959 3.91844 3.95349 4.08565 4.20706 4.26764 4.32469 4.35930 4.44573 4.51467 4.59080 4.65122 4.70151 4.74538 4.78418 4.83889 4.90970 4.97777 5.00127 5.02053 5.29191 5.32729 5.35469 5.48144 6.03287 6.07789 6.17893 6.44354 6.75286 6.81561 7.17357 7.33851 7.98739 8.82409 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.003321 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.073346 B = 8429.067790 C = 9559.183565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.555 5.555 3 C 0.035 3.965 4 C 0.115 3.885 5 C -0.025 4.025 6 C -0.153 4.153 7 C -0.213 4.213 8 S 0.237 5.763 9 C -0.282 4.282 10 C 0.585 3.415 11 O -0.546 6.546 12 N -0.704 5.704 13 C 0.155 3.845 14 H 0.078 0.922 15 C 0.133 3.867 16 N -0.627 5.627 17 C -0.317 4.317 18 H 0.044 0.956 19 C -0.076 4.076 20 N -0.960 5.960 21 Si 1.110 2.890 22 H -0.310 1.310 23 H -0.293 1.293 24 H -0.236 1.236 25 C 0.072 3.928 26 C 0.109 3.891 27 H 0.112 0.888 28 O -0.563 6.563 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.164 0.836 38 H 0.203 0.797 39 H 0.409 0.591 40 H 0.027 0.973 41 H 0.044 0.956 42 H 0.248 0.752 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.599 -9.053 24.139 31.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.113 4.113 4 C -0.014 4.014 5 C -0.042 4.042 6 C -0.184 4.184 7 C -0.351 4.351 8 S 0.506 5.494 9 C -0.403 4.403 10 C 0.372 3.628 11 O -0.425 6.425 12 N -0.357 5.357 13 C 0.049 3.951 14 H 0.096 0.904 15 C 0.007 3.993 16 N -0.356 5.356 17 C -0.446 4.446 18 H 0.062 0.938 19 C -0.269 4.269 20 N -0.604 5.604 21 Si 0.938 3.062 22 H -0.239 1.239 23 H -0.222 1.222 24 H -0.161 1.161 25 C -0.053 4.053 26 C 0.048 3.952 27 H 0.130 0.870 28 O -0.371 6.371 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.181 0.819 38 H 0.220 0.780 39 H 0.246 0.754 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.535 -9.832 23.109 29.530 hybrid contribution -2.012 2.327 0.470 3.112 sum -17.546 -7.504 23.579 30.334 Atomic orbital electron populations 1.22419 0.86427 1.02321 1.00933 1.61761 1.08594 1.14235 1.43288 1.22257 1.00161 0.88085 1.00838 1.20711 1.00541 0.88481 0.91711 1.19487 0.94172 0.96010 0.94484 1.20004 0.99281 0.94943 1.04182 1.25655 1.05473 1.00019 1.03966 1.82824 1.21184 1.06098 1.39327 1.24316 1.05083 1.00807 1.10063 1.17331 0.82074 0.84622 0.78729 1.90821 1.65166 1.20695 1.65805 1.45513 1.31320 1.13186 1.45657 1.21739 0.86465 0.96530 0.90400 0.90432 1.21930 0.90722 0.98181 0.88509 1.44629 1.29353 1.36216 1.25368 1.20065 1.03672 1.21244 0.99579 0.93755 1.27208 1.01277 1.01746 0.96671 1.70994 1.34264 1.44971 1.10143 0.83400 0.72719 0.77788 0.72326 1.23936 1.22175 1.16074 1.22941 0.95616 0.91134 0.95636 1.22832 0.90127 0.96337 0.85864 0.87006 1.86499 1.52742 1.52877 1.44982 0.94284 0.91585 0.91430 0.93056 0.91251 0.94276 0.92463 0.90990 0.81902 0.77985 0.75378 0.95459 0.93844 0.94295 0.92207 0.94820 0.74635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.33 127.69 1.19 1.71 16 2 N -0.55 -14.13 4.84 -953.48 -4.61 -18.75 16 3 C 0.03 0.82 9.57 127.69 1.22 2.05 16 4 C 0.11 2.73 4.35 85.56 0.37 3.11 16 5 C -0.02 -0.54 4.55 -20.42 -0.09 -0.63 16 6 C -0.15 -2.21 9.16 21.08 0.19 -2.02 16 7 C -0.21 -2.39 10.92 66.81 0.73 -1.66 16 8 S 0.24 3.45 22.16 -56.49 -1.25 2.20 16 9 C -0.28 -6.77 6.45 24.08 0.16 -6.61 16 10 C 0.58 18.48 7.78 86.42 0.67 19.15 16 11 O -0.55 -21.62 14.08 -4.34 -0.06 -21.68 16 12 N -0.70 -20.14 5.23 -440.01 -2.30 -22.44 16 13 C 0.16 5.55 3.04 46.38 0.14 5.69 16 14 H 0.08 3.27 7.73 -2.39 -0.02 3.25 16 15 C 0.13 5.79 6.92 86.85 0.60 6.39 16 16 N -0.63 -31.58 3.33 -691.96 -2.31 -33.88 16 17 C -0.32 -19.25 10.56 84.04 0.89 -18.36 16 18 H 0.04 2.93 8.06 -2.91 -0.02 2.91 16 19 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 20 N -0.96 -63.16 13.70 21.65 0.30 -62.87 16 21 Si 1.11 54.22 24.54 68.60 1.68 55.90 16 22 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 23 H -0.29 -14.13 6.83 99.48 0.68 -13.45 16 24 H -0.24 -9.50 5.44 99.48 0.54 -8.96 16 25 C 0.07 2.92 4.41 86.73 0.38 3.30 16 26 C 0.11 3.30 3.94 31.79 0.13 3.42 16 27 H 0.11 2.53 8.00 -2.39 -0.02 2.51 16 28 O -0.56 -15.05 13.39 -148.98 -2.00 -17.04 16 29 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 31 H 0.07 1.26 6.70 -2.39 -0.02 1.25 16 32 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 33 H 0.07 1.57 8.12 -2.39 -0.02 1.55 16 34 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 36 H 0.07 2.13 6.57 -2.39 -0.02 2.12 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.20 0.85 8.06 -2.91 -0.02 0.82 16 39 H 0.41 8.77 7.63 -92.71 -0.71 8.06 16 40 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.25 16.43 8.73 -92.71 -0.81 15.62 16 43 H 0.06 2.36 6.82 -2.39 -0.02 2.34 16 44 H 0.03 1.48 3.64 -2.38 -0.01 1.47 16 45 H 0.40 6.55 9.12 -74.06 -0.68 5.87 16 Total: -1.00 -82.98 371.26 -4.09 -87.07 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -0.58 Total: 20.16 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 7.05 Total: 11.33 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -8.92 Total: -137.93 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -2.06 Total: -38.72 kcal Atomic # 14 Polarization: 54.22 SS G_CDS: 1.68 Total: 55.90 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.25 Total: 2.20 kcal Total: -82.98 -4.09 -87.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077076355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.169 kcal (2) G-P(sol) polarization free energy of solvation -82.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds