Wall clock time and date at job start Tue Mar 31 2020 22:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99891 * 2 1 4 4 H 1.09004 * 109.47036 * 29.99847 * 3 2 1 5 5 C 1.53003 * 109.47162 * 270.00050 * 3 2 1 6 6 C 1.50701 * 109.46924 * 150.00213 * 3 2 1 7 7 N 1.28650 * 124.71317 * 224.99733 * 6 3 2 8 8 C 1.33566 * 115.76175 * 179.97438 * 7 6 3 9 9 C 1.47263 * 123.14292 * 180.02562 * 8 7 6 10 10 O 1.21633 * 120.00132 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99630 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72408 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 H 1.08996 * 112.84823 * 316.19572 * 13 12 11 15 15 C 1.53787 * 113.61355 * 87.50373 * 13 12 11 16 16 C 1.53783 * 87.08023 * 139.98452 * 15 13 12 17 17 H 1.08995 * 113.61720 * 89.11229 * 16 15 13 18 18 N 1.46498 * 113.61081 * 220.02115 * 16 15 13 19 19 C 1.36939 * 119.99843 * 252.49331 * 18 16 15 20 20 H 1.08005 * 119.99431 * 0.02562 * 19 18 16 21 21 C 1.38807 * 120.00411 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99762 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00391 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46650 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46948 * 119.99819 * 23 21 19 26 26 H 1.48491 * 109.47067 * 240.00445 * 23 21 19 27 27 C 1.53782 * 113.61417 * 185.00090 * 13 12 11 28 28 C 1.35210 * 113.71349 * 0.26973 * 8 7 6 29 29 S 1.70763 * 124.72194 * 44.95786 * 6 3 2 30 30 H 1.08998 * 109.47061 * 59.99577 * 1 2 3 31 31 H 1.08996 * 109.46987 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46953 * 300.00584 * 1 2 3 33 33 H 1.09003 * 109.46988 * 59.99527 * 5 3 2 34 34 H 1.08995 * 109.47340 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47232 * 300.00232 * 5 3 2 36 36 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 37 37 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 38 38 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 39 39 H 1.08998 * 113.61128 * 254.53330 * 15 13 12 40 40 H 1.08998 * 113.61325 * 25.42994 * 15 13 12 41 41 H 0.97001 * 120.00513 * 72.49254 * 18 16 15 42 42 H 0.97002 * 120.00270 * 179.97438 * 22 21 19 43 43 H 1.09001 * 113.61616 * 334.56263 * 27 13 12 44 44 H 1.08993 * 113.61391 * 105.46950 * 27 13 12 45 45 H 1.08008 * 125.58202 * 179.73803 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 3.7325 2.1276 1.5787 8 6 4.9449 1.9172 2.0982 9 6 5.5544 2.8030 3.1044 10 8 6.6635 2.5571 3.5390 11 7 4.8837 3.8867 3.5429 12 6 5.4876 4.7645 4.5483 13 6 4.5228 5.9065 4.8739 14 1 4.0611 6.3368 3.9852 15 6 3.5193 5.5664 5.9885 16 6 3.7303 6.9985 6.5074 17 1 3.0507 7.7274 6.0660 18 7 3.7943 7.0899 7.9681 19 6 2.7505 7.6361 8.6664 20 1 1.8800 7.9991 8.1401 21 6 2.8108 7.7223 10.0504 22 7 3.8714 7.2794 10.6918 23 14 1.3867 8.4667 11.0029 24 1 0.3226 8.8852 10.0554 25 1 0.8405 7.4577 11.9457 26 1 1.8646 9.6484 11.7646 27 6 5.1112 6.9558 5.8318 28 6 5.5623 0.8177 1.6102 29 16 4.5301 0.0633 0.4755 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.2568 1.8014 -1.9564 34 1 2.6614 2.7670 -1.4426 35 1 2.8829 1.0775 -1.9564 36 1 3.9994 4.0829 3.1961 37 1 5.6927 4.1930 5.4537 38 1 6.4191 5.1756 4.1594 39 1 2.5094 5.3782 5.6242 40 1 3.8731 4.7968 6.6745 41 1 4.5759 6.7635 8.4408 42 1 3.9138 7.3399 11.6590 43 1 5.9001 6.5661 6.4752 44 1 5.3862 7.8894 5.3412 45 1 6.5455 0.4715 1.8928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086087147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:26 Heat of formation + Delta-G solvation = -8.590758 kcal Electronic energy + Delta-G solvation = -25923.253475 eV Core-core repulsion = 22068.724037 eV Total energy + Delta-G solvation = -3854.529438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77793 -39.33904 -38.63780 -38.09115 -34.70216 -33.27294 -32.98875 -30.33787 -30.04068 -27.88528 -27.38301 -25.75991 -25.05694 -24.17050 -23.38136 -21.49761 -21.00327 -20.13908 -19.30779 -18.70114 -17.04985 -16.90624 -16.87541 -16.58901 -15.99709 -15.72768 -15.51244 -15.00625 -14.75969 -14.45780 -14.25469 -13.91817 -13.54581 -13.45552 -13.30785 -13.15913 -12.92542 -12.79941 -12.25815 -12.20943 -11.88157 -11.78767 -11.61174 -11.37694 -11.22424 -10.84718 -10.55710 -10.43861 -10.32810 -10.23625 -10.11358 -9.99625 -9.96498 -9.80663 -9.48423 -9.33530 -8.96092 -8.85603 -6.94742 -5.77201 -3.05913 0.15924 0.85894 1.29883 1.63532 2.81129 3.21006 3.22131 3.43098 3.48496 3.50956 3.84261 4.29865 4.51279 4.57190 4.59299 4.80462 4.85039 4.90081 4.93013 5.00705 5.04166 5.10947 5.19381 5.21773 5.26687 5.47754 5.48625 5.54675 5.56901 5.84124 5.86999 5.95735 6.10848 6.27466 6.33570 6.38952 6.45918 6.48232 6.62716 6.85289 6.99901 7.13866 7.51589 7.70599 8.11668 8.41416 9.52439 10.11059 10.45283 11.45283 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014428 B = 0.002006 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.146165 B =13953.508816 C =15152.721193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.163 3.837 4 H 0.095 0.905 5 C -0.170 4.170 6 C 0.017 3.983 7 N -0.435 5.435 8 C 0.012 3.988 9 C 0.590 3.410 10 O -0.537 6.537 11 N -0.705 5.705 12 C 0.131 3.869 13 C -0.127 4.127 14 H 0.089 0.911 15 C -0.161 4.161 16 C 0.166 3.834 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.242 4.242 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.142 4.142 28 C -0.231 4.231 29 S 0.252 5.748 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.409 0.591 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.562 -15.649 -28.926 32.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.102 3.898 4 H 0.113 0.887 5 C -0.228 4.228 6 C -0.262 4.262 7 N -0.152 5.152 8 C -0.124 4.124 9 C 0.373 3.627 10 O -0.415 6.415 11 N -0.355 5.355 12 C 0.008 3.992 13 C -0.146 4.146 14 H 0.107 0.893 15 C -0.202 4.202 16 C 0.054 3.946 17 H 0.093 0.907 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.181 4.181 28 C -0.374 4.374 29 S 0.509 5.491 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.245 0.755 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.117 -16.292 -28.961 33.296 hybrid contribution -0.698 1.112 1.327 1.867 sum -2.815 -15.179 -27.634 31.654 Atomic orbital electron populations 1.22874 0.79584 1.03412 1.00601 1.87896 1.20818 1.26273 1.95123 1.20304 0.88302 0.86241 0.94994 0.88693 1.22303 1.03442 1.02504 0.94551 1.26730 1.02105 0.96754 1.00638 1.66833 1.12820 1.27228 1.08275 1.20419 0.91327 0.98059 1.02559 1.17042 0.84702 0.80452 0.80475 1.90826 1.19250 1.73081 1.58308 1.45878 1.21377 1.25685 1.42558 1.21524 0.96204 0.90466 0.91027 1.22643 0.98017 0.96033 0.97946 0.89303 1.23950 0.97397 1.02278 0.96556 1.21520 0.93871 0.93674 0.85554 0.90657 1.42424 1.20918 1.72084 0.99657 1.19349 0.96624 1.32075 0.89305 0.91059 1.24775 0.97814 1.01892 0.96560 1.69673 1.28570 1.52228 1.07548 0.86117 0.81622 0.78446 0.80009 1.20547 1.21874 1.21854 1.23448 0.99934 0.97273 0.97487 1.26783 1.07249 1.00028 1.03315 1.82920 1.05211 1.25982 1.34948 0.93488 0.89004 0.93341 0.90883 0.90617 0.91281 0.75549 0.90961 0.91487 0.92755 0.90350 0.78059 0.93514 0.90069 0.91966 0.79150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.38 -2.79 10.17 -35.23 -0.36 -3.15 16 3 C 0.16 1.15 3.23 -27.88 -0.09 1.06 16 4 H 0.10 0.64 7.79 -51.93 -0.40 0.23 16 5 C -0.17 -0.86 9.51 37.16 0.35 -0.51 16 6 C 0.02 0.16 6.30 -13.61 -0.09 0.07 16 7 N -0.43 -4.92 10.12 -8.51 -0.09 -5.00 16 8 C 0.01 0.15 6.70 -84.52 -0.57 -0.42 16 9 C 0.59 8.60 7.80 -12.59 -0.10 8.50 16 10 O -0.54 -9.33 16.71 5.25 0.09 -9.24 16 11 N -0.70 -9.37 5.55 -61.43 -0.34 -9.71 16 12 C 0.13 1.83 5.51 -4.04 -0.02 1.81 16 13 C -0.13 -1.78 3.76 -89.80 -0.34 -2.12 16 14 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.16 -2.75 7.43 -25.91 -0.19 -2.95 16 16 C 0.17 3.26 4.48 -67.11 -0.30 2.96 16 17 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 18 N -0.71 -18.00 5.40 -52.63 -0.28 -18.28 16 19 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 23 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 27 C -0.14 -2.30 7.39 -25.91 -0.19 -2.49 16 28 C -0.23 -2.35 10.62 29.65 0.31 -2.03 16 29 S 0.25 1.96 22.73 -107.50 -2.44 -0.49 16 30 H 0.05 0.15 7.87 -51.93 -0.41 -0.26 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.22 8.09 -51.93 -0.42 -0.20 16 33 H 0.07 0.27 7.87 -51.93 -0.41 -0.14 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.41 4.88 7.99 -40.82 -0.33 4.55 16 37 H 0.07 1.13 7.84 -51.92 -0.41 0.72 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.48 7.90 -51.93 -0.41 1.07 16 41 H 0.39 10.36 7.92 -40.82 -0.32 10.03 16 42 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.19 1.72 8.03 -52.48 -0.42 1.30 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -33.52 394.24 -9.03 -42.55 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -6.88 Total: 9.91 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -0.37 Total: -2.30 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.01 Total: -60.69 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.27 Total: -12.39 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.44 Total: -0.49 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.52 -9.03 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086087147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.962 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds