Wall clock time and date at job start Tue Mar 31 2020 22:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99891 * 2 1 4 4 H 1.09004 * 109.47036 * 29.99847 * 3 2 1 5 5 C 1.53003 * 109.47162 * 270.00050 * 3 2 1 6 6 C 1.50701 * 109.46924 * 150.00213 * 3 2 1 7 7 N 1.28650 * 124.71317 * 224.99733 * 6 3 2 8 8 C 1.33566 * 115.76175 * 179.97438 * 7 6 3 9 9 C 1.47263 * 123.14292 * 180.02562 * 8 7 6 10 10 O 1.21633 * 120.00132 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99630 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72408 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 H 1.08996 * 112.84823 * 316.19572 * 13 12 11 15 15 C 1.53787 * 113.61355 * 87.50373 * 13 12 11 16 16 C 1.53783 * 87.08023 * 139.98452 * 15 13 12 17 17 H 1.08995 * 113.61720 * 89.11229 * 16 15 13 18 18 N 1.46498 * 113.61081 * 220.02115 * 16 15 13 19 19 C 1.36939 * 119.99843 * 252.49331 * 18 16 15 20 20 H 1.08005 * 119.99431 * 0.02562 * 19 18 16 21 21 C 1.38807 * 120.00411 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99762 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00391 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46650 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46948 * 119.99819 * 23 21 19 26 26 H 1.48491 * 109.47067 * 240.00445 * 23 21 19 27 27 C 1.53782 * 113.61417 * 185.00090 * 13 12 11 28 28 C 1.35210 * 113.71349 * 0.26973 * 8 7 6 29 29 S 1.70763 * 124.72194 * 44.95786 * 6 3 2 30 30 H 1.08998 * 109.47061 * 59.99577 * 1 2 3 31 31 H 1.08996 * 109.46987 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46953 * 300.00584 * 1 2 3 33 33 H 1.09003 * 109.46988 * 59.99527 * 5 3 2 34 34 H 1.08995 * 109.47340 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47232 * 300.00232 * 5 3 2 36 36 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 37 37 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 38 38 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 39 39 H 1.08998 * 113.61128 * 254.53330 * 15 13 12 40 40 H 1.08998 * 113.61325 * 25.42994 * 15 13 12 41 41 H 0.97001 * 120.00513 * 72.49254 * 18 16 15 42 42 H 0.97002 * 120.00270 * 179.97438 * 22 21 19 43 43 H 1.09001 * 113.61616 * 334.56263 * 27 13 12 44 44 H 1.08993 * 113.61391 * 105.46950 * 27 13 12 45 45 H 1.08008 * 125.58202 * 179.73803 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 3.7325 2.1276 1.5787 8 6 4.9449 1.9172 2.0982 9 6 5.5544 2.8030 3.1044 10 8 6.6635 2.5571 3.5390 11 7 4.8837 3.8867 3.5429 12 6 5.4876 4.7645 4.5483 13 6 4.5228 5.9065 4.8739 14 1 4.0611 6.3368 3.9852 15 6 3.5193 5.5664 5.9885 16 6 3.7303 6.9985 6.5074 17 1 3.0507 7.7274 6.0660 18 7 3.7943 7.0899 7.9681 19 6 2.7505 7.6361 8.6664 20 1 1.8800 7.9991 8.1401 21 6 2.8108 7.7223 10.0504 22 7 3.8714 7.2794 10.6918 23 14 1.3867 8.4667 11.0029 24 1 0.3226 8.8852 10.0554 25 1 0.8405 7.4577 11.9457 26 1 1.8646 9.6484 11.7646 27 6 5.1112 6.9558 5.8318 28 6 5.5623 0.8177 1.6102 29 16 4.5301 0.0633 0.4755 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.2568 1.8014 -1.9564 34 1 2.6614 2.7670 -1.4426 35 1 2.8829 1.0775 -1.9564 36 1 3.9994 4.0829 3.1961 37 1 5.6927 4.1930 5.4537 38 1 6.4191 5.1756 4.1594 39 1 2.5094 5.3782 5.6242 40 1 3.8731 4.7968 6.6745 41 1 4.5759 6.7635 8.4408 42 1 3.9138 7.3399 11.6590 43 1 5.9001 6.5661 6.4752 44 1 5.3862 7.8894 5.3412 45 1 6.5455 0.4715 1.8928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086087147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:25 Heat of formation + Delta-G solvation = -32.856730 kcal Electronic energy + Delta-G solvation = -25924.305726 eV Core-core repulsion = 22068.724037 eV Total energy + Delta-G solvation = -3855.581689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67621 -40.38392 -39.67002 -38.93226 -36.12358 -35.04671 -33.56899 -32.21329 -30.76784 -29.16897 -27.76851 -26.68001 -26.47169 -25.75737 -24.43321 -22.45927 -22.20847 -21.11154 -20.52910 -19.76241 -19.00755 -17.86685 -17.44719 -17.27286 -16.91921 -16.74231 -16.52803 -16.31998 -16.06982 -15.63460 -15.32640 -15.14253 -14.90707 -14.65810 -14.33399 -14.00035 -13.63683 -13.44213 -13.27131 -13.24954 -13.05663 -12.97222 -12.93183 -12.68479 -12.62677 -12.18826 -12.07020 -12.04882 -11.70036 -11.57875 -11.29191 -11.06048 -10.96479 -10.87901 -10.82676 -10.65929 -10.27721 -9.91137 -8.98357 -7.94953 -5.23408 -0.60013 0.17267 0.56689 0.75358 1.46802 1.47736 1.57787 2.06359 2.19893 2.36998 2.56333 3.21943 3.36938 3.58873 3.70666 3.71974 3.88415 4.02515 4.06148 4.09366 4.22224 4.23897 4.33428 4.40578 4.51385 4.52974 4.58541 4.63073 4.73864 4.74718 4.86806 4.92172 4.95921 4.97010 5.02274 5.19221 5.21665 5.29416 5.39434 5.51850 5.70887 6.02317 6.18970 6.27482 6.51819 7.04394 7.32808 8.10890 8.32916 9.28794 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014428 B = 0.002006 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.146165 B =13953.508816 C =15152.721193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.161 3.839 4 H 0.096 0.904 5 C -0.166 4.166 6 C 0.003 3.997 7 N -0.451 5.451 8 C -0.014 4.014 9 C 0.587 3.413 10 O -0.574 6.574 11 N -0.697 5.697 12 C 0.136 3.864 13 C -0.097 4.097 14 H 0.119 0.881 15 C -0.155 4.155 16 C 0.145 3.855 17 H 0.082 0.918 18 N -0.730 5.730 19 C -0.240 4.240 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.296 1.296 26 H -0.294 1.294 27 C -0.134 4.134 28 C -0.240 4.240 29 S 0.321 5.679 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.417 0.583 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 -15.997 -31.738 35.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.100 3.900 4 H 0.114 0.886 5 C -0.224 4.224 6 C -0.276 4.276 7 N -0.168 5.168 8 C -0.150 4.150 9 C 0.372 3.628 10 O -0.455 6.455 11 N -0.348 5.348 12 C 0.013 3.987 13 C -0.116 4.116 14 H 0.137 0.863 15 C -0.195 4.195 16 C 0.035 3.965 17 H 0.100 0.900 18 N -0.367 5.367 19 C -0.372 4.372 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.803 3.197 24 H -0.188 1.188 25 H -0.223 1.223 26 H -0.221 1.221 27 C -0.173 4.173 28 C -0.383 4.383 29 S 0.579 5.421 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.254 0.746 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.204 0.796 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.708 -16.638 -31.856 36.130 hybrid contribution -0.248 1.117 2.062 2.358 sum -3.956 -15.521 -29.794 33.827 Atomic orbital electron populations 1.23049 0.78275 1.04372 1.01322 1.87859 1.22266 1.26352 1.95265 1.20423 0.87306 0.86375 0.95852 0.88608 1.22291 1.04475 1.02342 0.93283 1.27227 1.03367 0.96841 1.00121 1.66800 1.12498 1.28362 1.09183 1.20186 0.92460 0.98838 1.03486 1.17388 0.84304 0.80610 0.80527 1.90794 1.20838 1.74030 1.59798 1.45786 1.21589 1.25338 1.42040 1.21360 0.96510 0.90283 0.90544 1.22472 0.96390 0.95001 0.97706 0.86278 1.23743 0.98887 0.99708 0.97212 1.21938 0.96447 0.95215 0.82865 0.90009 1.42642 1.19921 1.72230 1.01915 1.19770 0.97177 1.30518 0.89763 0.90290 1.25615 1.00486 1.03461 0.97752 1.69836 1.30744 1.54436 1.07320 0.85061 0.78963 0.77161 0.78530 1.18753 1.22304 1.22100 1.23317 0.97658 0.98910 0.97416 1.27037 1.07945 0.99693 1.03585 1.82683 1.02969 1.23858 1.32550 0.91853 0.87994 0.93554 0.89237 0.90725 0.91025 0.74589 0.93032 0.90925 0.91716 0.92636 0.79622 0.94119 0.91259 0.90023 0.78623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 113.37 1.23 1.41 16 2 O -0.40 -4.98 10.17 -148.98 -1.51 -6.50 16 3 C 0.16 1.97 3.23 29.85 0.10 2.06 16 4 H 0.10 1.13 7.79 -2.39 -0.02 1.11 16 5 C -0.17 -1.29 9.51 71.98 0.68 -0.61 16 6 C 0.00 0.06 6.30 88.57 0.56 0.61 16 7 N -0.45 -9.74 10.12 -180.83 -1.83 -11.58 16 8 C -0.01 -0.34 6.70 40.56 0.27 -0.07 16 9 C 0.59 17.13 7.80 86.62 0.68 17.80 16 10 O -0.57 -20.33 16.71 -4.14 -0.07 -20.39 16 11 N -0.70 -18.06 5.55 -466.50 -2.59 -20.65 16 12 C 0.14 3.74 5.51 86.38 0.48 4.21 16 13 C -0.10 -2.54 3.76 -10.26 -0.04 -2.58 16 14 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 15 C -0.15 -5.19 7.43 31.12 0.23 -4.96 16 16 C 0.14 5.59 4.48 45.52 0.20 5.80 16 17 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 18 N -0.73 -37.34 5.40 -320.44 -1.73 -39.07 16 19 C -0.24 -13.46 9.97 84.03 0.84 -12.62 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 22 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 23 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 24 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 27 C -0.13 -4.18 7.39 31.12 0.23 -3.95 16 28 C -0.24 -4.65 10.62 67.12 0.71 -3.94 16 29 S 0.32 4.36 22.73 -56.49 -1.28 3.08 16 30 H 0.06 0.24 7.87 -2.39 -0.02 0.22 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.35 8.09 -2.38 -0.02 0.33 16 33 H 0.09 0.41 7.87 -2.39 -0.02 0.39 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.42 9.39 7.99 -92.71 -0.74 8.65 16 37 H 0.05 1.65 7.84 -2.38 -0.02 1.63 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 2.13 7.90 -2.39 -0.02 2.11 16 41 H 0.37 20.66 7.92 -92.71 -0.73 19.93 16 42 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.07 2.36 8.08 -2.39 -0.02 2.34 16 44 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.20 3.45 8.03 -2.91 -0.02 3.42 16 Total: -1.00 -73.45 394.24 -0.54 -73.99 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.46 Total: 34.07 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 6.63 Total: -1.10 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.87 Total: -131.81 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -1.58 Total: -26.89 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.28 Total: 3.08 kcal Total: -73.45 -0.54 -73.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086087147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.129 kcal (2) G-P(sol) polarization free energy of solvation -73.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds