Wall clock time and date at job start Tue Mar 31 2020 23:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35725 * 117.00087 * 2 1 4 4 C 1.39353 * 120.36033 * 0.02562 * 3 2 1 5 5 N 1.31283 * 120.88406 * 179.70283 * 4 3 2 6 6 C 1.32896 * 121.71759 * 0.55980 * 5 4 3 7 7 C 1.47754 * 119.68877 * 179.70859 * 6 5 4 8 8 O 1.21573 * 119.99621 * 179.73098 * 7 6 5 9 9 N 1.34774 * 119.99940 * 359.73520 * 7 6 5 10 10 C 1.46502 * 119.99752 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.46036 * 35.02344 * 10 9 7 12 12 C 1.53039 * 109.44835 * 275.06173 * 10 9 7 13 13 C 1.53202 * 109.31109 * 301.35180 * 12 10 9 14 14 N 1.46926 * 108.77258 * 305.36386 * 13 12 10 15 15 C 1.36942 * 120.63063 * 233.88219 * 14 13 12 16 16 H 1.07992 * 119.99875 * 152.42889 * 15 14 13 17 17 C 1.38807 * 119.99880 * 332.42519 * 15 14 13 18 18 N 1.31624 * 120.00086 * 159.47314 * 17 15 14 19 19 Si 1.86803 * 120.00386 * 339.47592 * 17 15 14 20 20 H 1.48500 * 109.47214 * 93.00133 * 19 17 15 21 21 H 1.48499 * 109.47277 * 213.00605 * 19 17 15 22 22 H 1.48503 * 109.46657 * 333.00776 * 19 17 15 23 23 C 1.46924 * 118.73914 * 53.61240 * 14 13 12 24 24 C 1.53039 * 109.45933 * 154.99894 * 10 9 7 25 25 H 1.09008 * 109.52101 * 178.60516 * 24 10 9 26 26 O 1.42894 * 109.49845 * 298.68802 * 24 10 9 27 27 C 1.39725 * 120.61889 * 359.43876 * 6 5 4 28 28 F 1.35100 * 120.45976 * 180.24889 * 27 6 5 29 29 C 1.38682 * 119.06976 * 0.27493 * 27 6 5 30 30 H 1.08999 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47009 * 300.00066 * 1 2 3 32 32 H 1.08997 * 109.47051 * 59.99807 * 1 2 3 33 33 H 1.08007 * 119.55571 * 359.97438 * 4 3 2 34 34 H 0.97000 * 120.00227 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.50464 * 61.30156 * 12 10 9 36 36 H 1.08999 * 109.50302 * 181.36879 * 12 10 9 37 37 H 1.08998 * 109.58752 * 185.58162 * 13 12 10 38 38 H 1.08994 * 109.58701 * 65.14953 * 13 12 10 39 39 H 0.96999 * 120.00261 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.59189 * 66.17159 * 23 14 13 41 41 H 1.09000 * 109.59004 * 186.60075 * 23 14 13 42 42 H 0.96693 * 114.00328 * 179.84366 * 26 24 10 43 43 H 1.08003 * 120.78305 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 0.0005 5 7 1.8789 3.5579 0.0064 6 6 3.2023 3.6793 0.0010 7 6 3.8138 5.0244 0.0014 8 8 5.0238 5.1420 0.0014 9 7 3.0301 6.1209 0.0019 10 6 3.6364 7.4545 0.0029 11 1 4.5531 7.4372 -0.5867 12 6 3.9629 7.8648 1.4407 13 6 2.6778 7.8545 2.2746 14 7 1.6795 8.7077 1.6155 15 6 1.0653 9.7209 2.3020 16 1 0.7021 10.5893 1.7725 17 6 0.9094 9.6319 3.6784 18 7 0.7053 10.7206 4.3895 19 14 0.9894 7.9670 4.5218 20 1 2.3793 7.7085 4.9761 21 1 0.0765 7.9610 5.6930 22 1 0.5759 6.9079 3.5664 23 6 1.3573 8.4568 0.2042 24 6 2.6571 8.4603 -0.6065 25 1 3.0975 9.4572 -0.5837 26 8 2.3768 8.0936 -1.9589 27 6 4.0209 2.5470 0.0005 28 9 5.3658 2.6741 0.0000 29 6 3.4332 1.2908 0.0000 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.2151 2.3247 0.0005 34 1 2.0647 6.0270 0.0016 35 1 4.6783 7.1613 1.8664 36 1 4.3917 8.8669 1.4447 37 1 2.8865 8.2405 3.2724 38 1 2.2972 6.8358 2.3469 39 1 0.5967 10.6584 5.3514 40 1 0.8690 7.4871 0.1075 41 1 0.6948 9.2401 -0.1642 42 1 1.7595 8.6874 -2.4076 43 1 4.0395 0.3969 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090312761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:56 Heat of formation + Delta-G solvation = -90.132632 kcal Electronic energy + Delta-G solvation = -30406.201017 eV Core-core repulsion = 25981.922482 eV Total energy + Delta-G solvation = -4424.278535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.17400 -41.15394 -39.93870 -38.63659 -37.73400 -35.63584 -34.20182 -32.80797 -31.91410 -31.07570 -30.13530 -29.14228 -28.06627 -25.54856 -24.80479 -23.51971 -22.70392 -22.04119 -21.17620 -19.05788 -18.98270 -18.40785 -17.97607 -17.11448 -16.64668 -16.62285 -16.48870 -15.90565 -15.78367 -15.32289 -15.18660 -14.96066 -14.78088 -14.36983 -14.00832 -13.79232 -13.73443 -13.64470 -13.27509 -13.02888 -12.61077 -12.54634 -12.49802 -12.29532 -12.01344 -11.82624 -11.55015 -11.23189 -11.16294 -10.39877 -10.30165 -10.08212 -9.97489 -9.92866 -9.72795 -9.70773 -9.53515 -9.01838 -8.76312 -8.60093 -7.05968 -6.01475 -3.39144 0.24872 0.59606 2.43142 2.59994 3.15242 3.29689 3.44943 3.47828 3.52359 3.76739 3.87266 4.03958 4.30318 4.43076 4.47839 4.52311 4.59254 4.63595 4.90390 4.91272 4.99961 5.16208 5.24759 5.28670 5.42639 5.46545 5.57182 5.71190 5.79195 5.93679 6.03017 6.21027 6.33758 6.38790 6.48835 6.53810 6.60827 6.69932 6.83233 7.21060 7.74561 7.78978 7.92103 8.25034 8.34265 8.84680 9.64121 9.99624 11.14007 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.003762 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.798509 B = 7441.218379 C = 8340.782945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.303 6.303 3 C 0.129 3.871 4 C 0.011 3.989 5 N -0.388 5.388 6 C 0.013 3.987 7 C 0.571 3.429 8 O -0.531 6.531 9 N -0.686 5.686 10 C 0.163 3.837 11 H 0.088 0.912 12 C -0.146 4.146 13 C 0.126 3.874 14 N -0.600 5.600 15 C -0.265 4.265 16 H 0.087 0.913 17 C 0.028 3.972 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.120 3.880 24 C 0.076 3.924 25 H 0.073 0.927 26 O -0.569 6.569 27 C 0.155 3.845 28 F -0.097 7.097 29 C -0.162 4.162 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.174 0.826 34 H 0.412 0.588 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.028 0.972 39 H 0.264 0.736 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.376 0.624 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 -19.685 -11.390 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.080 3.920 4 C -0.152 4.152 5 N -0.099 5.099 6 C -0.127 4.127 7 C 0.355 3.645 8 O -0.408 6.408 9 N -0.337 5.337 10 C 0.059 3.941 11 H 0.106 0.894 12 C -0.186 4.186 13 C 0.000 4.000 14 N -0.326 5.326 15 C -0.393 4.393 16 H 0.104 0.896 17 C -0.172 4.172 18 N -0.548 5.548 19 Si 0.711 3.289 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C -0.007 4.007 24 C 0.016 3.984 25 H 0.091 0.909 26 O -0.373 6.373 27 C 0.132 3.868 28 F -0.075 7.075 29 C -0.188 4.188 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.190 0.810 34 H 0.249 0.751 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.223 0.777 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.844 -19.384 -11.082 22.344 hybrid contribution -0.447 -1.188 0.579 1.395 sum 0.397 -20.572 -10.503 23.102 Atomic orbital electron populations 1.23283 0.76880 1.05018 1.02343 1.86059 1.22525 1.25438 1.87365 1.20009 0.92058 0.86112 0.93851 1.23091 1.01193 0.86368 1.04537 1.67521 1.09373 1.26865 1.06182 1.21362 0.89364 0.94267 1.07698 1.17455 0.86374 0.83120 0.77589 1.90836 1.13084 1.86251 1.50616 1.45782 1.11029 1.04857 1.72026 1.20918 0.96155 0.80271 0.96785 0.89444 1.22429 0.99678 1.02119 0.94392 1.21357 0.88058 0.94087 0.96470 1.44272 1.43978 1.37212 1.07090 1.18884 1.34277 0.95701 0.90408 0.89561 1.25244 0.98847 0.96679 0.96381 1.69828 1.51819 1.26821 1.06310 0.86983 0.76645 0.86413 0.78818 1.21582 1.23090 1.19481 1.21578 0.93965 0.99437 0.85690 1.22695 0.97294 0.97084 0.81363 0.90920 1.86484 1.68423 1.56833 1.25565 1.18231 0.78774 0.92723 0.97116 1.91649 1.27156 1.96414 1.92303 1.20803 0.92881 0.97696 1.07437 0.87366 0.91667 0.91708 0.80958 0.75065 0.91289 0.90209 0.90657 0.95417 0.92654 0.95271 0.91219 0.77734 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.82 101.05 0.99 1.07 16 2 O -0.30 -2.35 10.50 -18.88 -0.20 -2.54 16 3 C 0.13 1.22 6.72 -38.87 -0.26 0.96 16 4 C 0.01 0.11 10.21 -17.37 -0.18 -0.07 16 5 N -0.39 -5.23 9.52 -9.63 -0.09 -5.32 16 6 C 0.01 0.19 6.75 -82.96 -0.56 -0.37 16 7 C 0.57 10.02 7.76 -12.37 -0.10 9.93 16 8 O -0.53 -10.51 14.97 5.30 0.08 -10.43 16 9 N -0.69 -11.73 4.14 -54.73 -0.23 -11.96 16 10 C 0.16 2.83 2.47 -67.89 -0.17 2.66 16 11 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 12 C -0.15 -2.73 5.77 -26.61 -0.15 -2.88 16 13 C 0.13 2.74 3.95 -3.71 -0.01 2.73 16 14 N -0.60 -13.65 2.77 -172.32 -0.48 -14.12 16 15 C -0.26 -7.13 10.03 -15.06 -0.15 -7.28 16 16 H 0.09 2.46 8.05 -52.49 -0.42 2.04 16 17 C 0.03 0.79 5.23 -17.43 -0.09 0.70 16 18 N -0.91 -27.24 13.97 55.49 0.78 -26.47 16 19 Si 0.88 22.23 24.35 -169.99 -4.14 18.09 16 20 H -0.29 -7.13 6.63 56.52 0.37 -6.76 16 21 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 22 H -0.27 -6.68 6.63 56.52 0.37 -6.31 16 23 C 0.12 2.21 5.84 -3.71 -0.02 2.19 16 24 C 0.08 1.24 3.36 -26.61 -0.09 1.15 16 25 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 26 O -0.57 -8.14 13.21 -35.23 -0.47 -8.60 16 27 C 0.15 2.07 7.31 -38.86 -0.28 1.79 16 28 F -0.10 -1.45 15.54 2.25 0.03 -1.41 16 29 C -0.16 -1.66 10.10 -39.12 -0.40 -2.05 16 30 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 32 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 33 H 0.17 1.18 6.31 -52.48 -0.33 0.85 16 34 H 0.41 6.93 6.18 -40.82 -0.25 6.67 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.81 4.49 -51.93 -0.23 1.58 16 38 H 0.03 0.62 6.68 -51.93 -0.35 0.27 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.03 0.53 6.64 -51.93 -0.34 0.19 16 41 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 42 H 0.38 3.77 9.08 45.56 0.41 4.19 16 43 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 351.88 15.07 5.30 5.30 Total: -1.00 -34.20 351.88 -5.30 -39.50 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.42 Total: 7.48 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -1.47 Total: 10.51 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.02 Total: -57.88 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.58 Total: -21.58 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.03 Total: -1.41 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.20 -5.30 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090312761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.634 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds