Wall clock time and date at job start Tue Mar 31 2020 23:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35725 * 117.00087 * 2 1 4 4 C 1.39353 * 120.36033 * 0.02562 * 3 2 1 5 5 N 1.31283 * 120.88406 * 179.70283 * 4 3 2 6 6 C 1.32896 * 121.71759 * 0.55980 * 5 4 3 7 7 C 1.47754 * 119.68877 * 179.70859 * 6 5 4 8 8 O 1.21573 * 119.99621 * 179.73098 * 7 6 5 9 9 N 1.34774 * 119.99940 * 359.73520 * 7 6 5 10 10 C 1.46502 * 119.99752 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.46036 * 35.02344 * 10 9 7 12 12 C 1.53039 * 109.44835 * 275.06173 * 10 9 7 13 13 C 1.53202 * 109.31109 * 301.35180 * 12 10 9 14 14 N 1.46926 * 108.77258 * 305.36386 * 13 12 10 15 15 C 1.36942 * 120.63063 * 233.88219 * 14 13 12 16 16 H 1.07992 * 119.99875 * 152.42889 * 15 14 13 17 17 C 1.38807 * 119.99880 * 332.42519 * 15 14 13 18 18 N 1.31624 * 120.00086 * 159.47314 * 17 15 14 19 19 Si 1.86803 * 120.00386 * 339.47592 * 17 15 14 20 20 H 1.48500 * 109.47214 * 93.00133 * 19 17 15 21 21 H 1.48499 * 109.47277 * 213.00605 * 19 17 15 22 22 H 1.48503 * 109.46657 * 333.00776 * 19 17 15 23 23 C 1.46924 * 118.73914 * 53.61240 * 14 13 12 24 24 C 1.53039 * 109.45933 * 154.99894 * 10 9 7 25 25 H 1.09008 * 109.52101 * 178.60516 * 24 10 9 26 26 O 1.42894 * 109.49845 * 298.68802 * 24 10 9 27 27 C 1.39725 * 120.61889 * 359.43876 * 6 5 4 28 28 F 1.35100 * 120.45976 * 180.24889 * 27 6 5 29 29 C 1.38682 * 119.06976 * 0.27493 * 27 6 5 30 30 H 1.08999 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47009 * 300.00066 * 1 2 3 32 32 H 1.08997 * 109.47051 * 59.99807 * 1 2 3 33 33 H 1.08007 * 119.55571 * 359.97438 * 4 3 2 34 34 H 0.97000 * 120.00227 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.50464 * 61.30156 * 12 10 9 36 36 H 1.08999 * 109.50302 * 181.36879 * 12 10 9 37 37 H 1.08998 * 109.58752 * 185.58162 * 13 12 10 38 38 H 1.08994 * 109.58701 * 65.14953 * 13 12 10 39 39 H 0.96999 * 120.00261 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.59189 * 66.17159 * 23 14 13 41 41 H 1.09000 * 109.59004 * 186.60075 * 23 14 13 42 42 H 0.96693 * 114.00328 * 179.84366 * 26 24 10 43 43 H 1.08003 * 120.78305 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 0.0005 5 7 1.8789 3.5579 0.0064 6 6 3.2023 3.6793 0.0010 7 6 3.8138 5.0244 0.0014 8 8 5.0238 5.1420 0.0014 9 7 3.0301 6.1209 0.0019 10 6 3.6364 7.4545 0.0029 11 1 4.5531 7.4372 -0.5867 12 6 3.9629 7.8648 1.4407 13 6 2.6778 7.8545 2.2746 14 7 1.6795 8.7077 1.6155 15 6 1.0653 9.7209 2.3020 16 1 0.7021 10.5893 1.7725 17 6 0.9094 9.6319 3.6784 18 7 0.7053 10.7206 4.3895 19 14 0.9894 7.9670 4.5218 20 1 2.3793 7.7085 4.9761 21 1 0.0765 7.9610 5.6930 22 1 0.5759 6.9079 3.5664 23 6 1.3573 8.4568 0.2042 24 6 2.6571 8.4603 -0.6065 25 1 3.0975 9.4572 -0.5837 26 8 2.3768 8.0936 -1.9589 27 6 4.0209 2.5470 0.0005 28 9 5.3658 2.6741 0.0000 29 6 3.4332 1.2908 0.0000 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.2151 2.3247 0.0005 34 1 2.0647 6.0270 0.0016 35 1 4.6783 7.1613 1.8664 36 1 4.3917 8.8669 1.4447 37 1 2.8865 8.2405 3.2724 38 1 2.2972 6.8358 2.3469 39 1 0.5967 10.6584 5.3514 40 1 0.8690 7.4871 0.1075 41 1 0.6948 9.2401 -0.1642 42 1 1.7595 8.6874 -2.4076 43 1 4.0395 0.3969 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090312761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:56 Heat of formation + Delta-G solvation = -118.450343 kcal Electronic energy + Delta-G solvation = -30407.428965 eV Core-core repulsion = 25981.922482 eV Total energy + Delta-G solvation = -4425.506483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.20256 -42.03802 -41.17289 -39.70110 -38.86778 -37.09007 -35.71753 -33.96345 -33.49738 -32.38163 -31.44186 -30.59876 -28.53191 -27.24585 -25.86882 -24.44967 -24.25093 -23.66739 -22.43366 -20.55121 -19.79249 -19.46154 -19.06704 -18.62872 -18.03971 -17.47677 -17.42149 -17.35526 -16.81205 -16.65141 -16.35552 -16.25194 -15.98176 -15.69159 -15.51003 -15.24685 -14.99094 -14.43081 -14.42265 -14.29902 -14.09741 -13.98099 -13.79061 -13.42144 -13.20928 -13.01346 -12.95610 -12.80806 -12.54306 -12.19331 -11.87434 -11.63219 -11.47205 -11.38183 -11.18774 -10.85547 -10.77859 -10.68389 -10.19815 -9.72657 -8.97452 -8.18679 -5.51528 -0.68961 -0.23601 1.28418 1.38325 1.46677 1.51593 1.77537 1.99775 2.39025 2.47484 2.84398 2.90824 2.97398 3.11625 3.29857 3.36240 3.51120 3.70706 3.78387 3.97134 3.98090 4.10232 4.21268 4.29889 4.37603 4.38424 4.40467 4.49325 4.65424 4.71165 4.79515 4.83419 4.83689 4.90527 5.04189 5.10042 5.17744 5.41092 5.82590 5.92794 6.10874 6.23865 6.51676 6.80277 6.92670 7.04836 7.57131 7.97186 9.00532 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.003762 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.798509 B = 7441.218379 C = 8340.782945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.304 6.304 3 C 0.148 3.852 4 C 0.017 3.983 5 N -0.405 5.405 6 C -0.019 4.019 7 C 0.566 3.434 8 O -0.564 6.564 9 N -0.684 5.684 10 C 0.164 3.836 11 H 0.085 0.915 12 C -0.137 4.137 13 C 0.127 3.873 14 N -0.610 5.610 15 C -0.246 4.246 16 H 0.064 0.936 17 C -0.026 4.026 18 N -0.952 5.952 19 Si 0.936 3.064 20 H -0.285 1.285 21 H -0.309 1.309 22 H -0.261 1.261 23 C 0.119 3.881 24 C 0.095 3.905 25 H 0.075 0.925 26 O -0.569 6.569 27 C 0.142 3.858 28 F -0.113 7.113 29 C -0.157 4.157 30 H 0.130 0.870 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.207 0.793 34 H 0.413 0.587 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.028 0.972 39 H 0.262 0.738 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.397 0.603 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 -22.556 -12.778 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.215 6.215 3 C 0.098 3.902 4 C -0.147 4.147 5 N -0.117 5.117 6 C -0.156 4.156 7 C 0.352 3.648 8 O -0.443 6.443 9 N -0.335 5.335 10 C 0.059 3.941 11 H 0.103 0.897 12 C -0.177 4.177 13 C 0.002 3.998 14 N -0.336 5.336 15 C -0.376 4.376 16 H 0.082 0.918 17 C -0.221 4.221 18 N -0.598 5.598 19 Si 0.766 3.234 20 H -0.212 1.212 21 H -0.238 1.238 22 H -0.185 1.185 23 C -0.006 4.006 24 C 0.034 3.966 25 H 0.093 0.907 26 O -0.376 6.376 27 C 0.119 3.881 28 F -0.091 7.091 29 C -0.183 4.183 30 H 0.148 0.852 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.224 0.776 34 H 0.251 0.749 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.247 0.753 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.313 -22.283 -12.525 25.564 hybrid contribution -0.230 -0.431 0.881 1.007 sum -0.542 -22.714 -11.644 25.531 Atomic orbital electron populations 1.23685 0.74607 1.07002 1.03539 1.86092 1.24771 1.24213 1.86398 1.20009 0.91778 0.86739 0.91690 1.23663 1.02712 0.85571 1.02743 1.67474 1.08610 1.28599 1.07013 1.20988 0.90357 0.93219 1.11080 1.17887 0.86096 0.84194 0.76599 1.90800 1.14401 1.86948 1.52132 1.45742 1.11009 1.04681 1.72045 1.20837 0.96593 0.80932 0.95697 0.89691 1.22294 0.97993 1.02403 0.94981 1.21275 0.89186 0.93462 0.95838 1.44331 1.44131 1.36511 1.08593 1.18881 1.32473 0.95803 0.90393 0.91813 1.25773 0.99953 0.99114 0.97288 1.69938 1.54753 1.28624 1.06440 0.86083 0.76477 0.83121 0.77739 1.21239 1.23824 1.18493 1.21747 0.95422 1.00121 0.83339 1.22318 0.95534 0.96746 0.81988 0.90684 1.86462 1.69223 1.57663 1.24254 1.18397 0.78104 0.93567 0.98070 1.91602 1.28316 1.96582 1.92638 1.21000 0.93698 0.97172 1.06447 0.85199 0.90679 0.90231 0.77612 0.74868 0.91275 0.89951 0.93060 0.95381 0.92920 0.94239 0.90479 0.75274 0.79680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 9.82 113.37 1.11 1.13 16 2 O -0.30 -3.51 10.50 -90.48 -0.95 -4.46 16 3 C 0.15 2.32 6.72 22.73 0.15 2.48 16 4 C 0.02 0.29 10.21 85.04 0.87 1.16 16 5 N -0.41 -10.18 9.52 -184.39 -1.76 -11.94 16 6 C -0.02 -0.56 6.75 41.86 0.28 -0.28 16 7 C 0.57 19.84 7.76 86.76 0.67 20.51 16 8 O -0.56 -22.64 14.97 -3.94 -0.06 -22.70 16 9 N -0.68 -22.81 4.14 -445.35 -1.84 -24.65 16 10 C 0.16 5.54 2.47 45.02 0.11 5.65 16 11 H 0.09 2.96 7.58 -2.38 -0.02 2.94 16 12 C -0.14 -5.04 5.77 30.67 0.18 -4.87 16 13 C 0.13 5.48 3.95 86.37 0.34 5.83 16 14 N -0.61 -27.26 2.77 -699.10 -1.93 -29.19 16 15 C -0.25 -13.32 10.03 84.03 0.84 -12.48 16 16 H 0.06 3.69 8.05 -2.91 -0.02 3.67 16 17 C -0.03 -1.48 5.23 84.86 0.44 -1.04 16 18 N -0.95 -58.59 13.97 21.65 0.30 -58.28 16 19 Si 0.94 46.36 24.35 68.60 1.67 48.03 16 20 H -0.28 -13.82 6.63 99.48 0.66 -13.16 16 21 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 22 H -0.26 -12.33 6.63 99.48 0.66 -11.67 16 23 C 0.12 4.18 5.84 86.36 0.50 4.68 16 24 C 0.10 2.91 3.36 30.67 0.10 3.02 16 25 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 26 O -0.57 -14.84 13.21 -148.98 -1.97 -16.81 16 27 C 0.14 3.70 7.31 22.74 0.17 3.87 16 28 F -0.11 -3.40 15.54 44.97 0.70 -2.71 16 29 C -0.16 -2.88 10.10 22.57 0.23 -2.65 16 30 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.07 0.19 7.67 -2.39 -0.02 0.17 16 32 H 0.08 0.12 7.67 -2.39 -0.02 0.10 16 33 H 0.21 1.91 6.31 -2.91 -0.02 1.89 16 34 H 0.41 13.33 6.18 -92.71 -0.57 12.76 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.05 2.46 4.49 -2.39 -0.01 2.45 16 38 H 0.03 1.22 6.68 -2.39 -0.02 1.20 16 39 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.04 1.34 6.64 -2.39 -0.02 1.33 16 41 H 0.08 2.58 7.93 -2.39 -0.02 2.56 16 42 H 0.40 6.75 9.08 -74.06 -0.67 6.08 16 43 H 0.19 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -75.37 351.88 -0.08 -75.45 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.25 Total: 20.25 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 6.01 Total: 27.01 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -5.23 Total: -124.07 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -2.98 Total: -43.97 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.70 Total: -2.71 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.67 Total: 48.03 kcal Total: -75.37 -0.08 -75.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090312761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.997 kcal (2) G-P(sol) polarization free energy of solvation -75.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds