Wall clock time and date at job start Tue Mar 31 2020 23:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35723 * 116.99865 * 2 1 4 4 C 1.39357 * 120.36328 * 0.02562 * 3 2 1 5 5 N 1.31291 * 120.88748 * 180.02562 * 4 3 2 6 6 C 1.32891 * 121.71192 * 0.02562 * 5 4 3 7 7 C 1.47766 * 119.68209 * 180.02562 * 6 5 4 8 8 O 1.21563 * 119.99324 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00097 * 359.97438 * 7 6 5 10 10 C 1.46505 * 120.00020 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.45710 * 324.97190 * 10 9 7 12 12 C 1.53036 * 109.45901 * 84.93032 * 10 9 7 13 13 C 1.52762 * 109.38195 * 181.26014 * 12 10 9 14 14 N 1.46924 * 109.01065 * 305.59134 * 13 12 10 15 15 C 1.36940 * 120.63095 * 233.58150 * 14 13 12 16 16 H 1.08002 * 119.99755 * 29.32281 * 15 14 13 17 17 C 1.38808 * 119.99865 * 209.32094 * 15 14 13 18 18 N 1.31618 * 119.99792 * 198.90084 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 18.90347 * 17 15 14 20 20 H 1.48499 * 109.46914 * 273.06219 * 19 17 15 21 21 H 1.48499 * 109.47046 * 33.06334 * 19 17 15 22 22 H 1.48497 * 109.47321 * 153.06157 * 19 17 15 23 23 C 1.46926 * 118.73614 * 53.30809 * 14 13 12 24 24 C 1.53041 * 109.45944 * 205.00049 * 10 9 7 25 25 H 1.08997 * 109.52444 * 58.64526 * 24 10 9 26 26 O 1.42899 * 109.49712 * 298.56283 * 24 10 9 27 27 C 1.39716 * 120.62961 * 0.27129 * 6 5 4 28 28 F 1.35092 * 120.46485 * 179.70003 * 27 6 5 29 29 C 1.38695 * 119.06367 * 359.46239 * 27 6 5 30 30 H 1.08996 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47271 * 299.99535 * 1 2 3 32 32 H 1.08999 * 109.46966 * 59.99900 * 1 2 3 33 33 H 1.08011 * 119.55912 * 359.97438 * 4 3 2 34 34 H 0.96995 * 120.00105 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.50319 * 301.33889 * 12 10 9 36 36 H 1.09003 * 109.49980 * 61.43950 * 12 10 9 37 37 H 1.09002 * 109.51318 * 185.70346 * 13 12 10 38 38 H 1.09006 * 109.43228 * 65.42625 * 13 12 10 39 39 H 0.97002 * 119.99787 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.59030 * 66.43467 * 23 14 13 41 41 H 1.09008 * 109.58595 * 186.71586 * 23 14 13 42 42 H 0.96703 * 113.99506 * 180.16363 * 26 24 10 43 43 H 1.07997 * 120.78112 * 180.23898 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 0.0005 5 7 1.8789 3.5581 0.0000 6 6 3.2022 3.6794 -0.0015 7 6 3.8137 5.0246 -0.0014 8 8 5.0236 5.1421 -0.0033 9 7 3.0301 6.1210 -0.0003 10 6 3.6363 7.4547 -0.0008 11 1 4.5534 7.4369 0.5880 12 6 3.9617 7.8663 -1.4384 13 6 4.6223 9.2437 -1.4343 14 7 3.7549 10.1883 -0.7174 15 6 3.3658 11.3623 -1.3052 16 1 3.2651 11.4212 -2.3789 17 6 3.1008 12.4767 -0.5211 18 7 2.3868 13.4693 -1.0081 19 14 3.7576 12.5675 1.2253 20 1 2.7961 11.9156 2.1503 21 1 5.0662 11.8694 1.2989 22 1 3.9327 13.9897 1.6150 23 6 3.3080 9.8466 0.6399 24 6 2.6575 8.4600 0.6103 25 1 2.4075 8.1536 1.6261 26 8 1.4678 8.5080 -0.1798 27 6 4.0208 2.5472 -0.0083 28 9 5.3657 2.6744 -0.0160 29 6 3.4332 1.2909 -0.0021 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2150 2.3248 0.0005 34 1 2.0647 6.0272 0.0000 35 1 4.6405 7.1373 -1.8809 36 1 3.0419 7.9086 -2.0218 37 1 4.7629 9.5832 -2.4605 38 1 5.5880 9.1812 -0.9324 39 1 2.2014 14.2479 -0.4600 40 1 4.1642 9.8343 1.3144 41 1 2.5833 10.5852 0.9828 42 1 0.8024 9.1281 0.1486 43 1 4.0395 0.3971 -0.0033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090312762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:59 Heat of formation + Delta-G solvation = -119.344294 kcal Electronic energy + Delta-G solvation = -29773.230006 eV Core-core repulsion = 25347.684758 eV Total energy + Delta-G solvation = -4425.545248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.18680 -41.99632 -41.04135 -39.76451 -38.90208 -36.62622 -35.82657 -34.12388 -33.51518 -32.24995 -31.44422 -30.74939 -28.52520 -27.08503 -25.72559 -24.68536 -24.19449 -23.35754 -21.90016 -21.21009 -19.73855 -19.47010 -19.10898 -18.72907 -17.74270 -17.42783 -17.37278 -17.26427 -16.80283 -16.62035 -16.31383 -16.05368 -15.92040 -15.70102 -15.66312 -15.04608 -14.93134 -14.51719 -14.41998 -14.31429 -14.16129 -13.99338 -13.89043 -13.41925 -13.03389 -12.93240 -12.68374 -12.52029 -12.44955 -12.19169 -11.98396 -11.88939 -11.49501 -11.37476 -10.92863 -10.88793 -10.75622 -10.59737 -10.16440 -9.70468 -8.89859 -8.13922 -5.48429 -0.67351 -0.21826 1.27754 1.44338 1.51792 1.52661 1.78382 1.97902 2.41911 2.48721 2.86668 2.96052 3.02463 3.29140 3.32203 3.36251 3.54923 3.72197 3.72791 3.92257 3.99812 4.12282 4.22934 4.38938 4.40189 4.43130 4.52491 4.61396 4.68599 4.71458 4.75093 4.78128 4.82312 4.96589 5.02392 5.11794 5.35571 5.43310 5.88196 5.95501 6.14715 6.25834 6.55332 6.83405 6.94526 7.07165 7.60944 8.02237 9.06120 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.002618 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.779219 B =10692.047479 C =11297.182053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.306 6.306 3 C 0.148 3.852 4 C 0.019 3.981 5 N -0.401 5.401 6 C -0.017 4.017 7 C 0.566 3.434 8 O -0.563 6.563 9 N -0.687 5.687 10 C 0.164 3.836 11 H 0.089 0.911 12 C -0.124 4.124 13 C 0.148 3.852 14 N -0.608 5.608 15 C -0.242 4.242 16 H 0.046 0.954 17 C -0.032 4.032 18 N -0.957 5.957 19 Si 0.946 3.054 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.313 1.313 23 C 0.089 3.911 24 C 0.095 3.905 25 H 0.082 0.918 26 O -0.561 6.561 27 C 0.141 3.859 28 F -0.115 7.115 29 C -0.159 4.159 30 H 0.128 0.872 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.210 0.790 34 H 0.419 0.581 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.262 0.738 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.389 0.611 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 -30.946 6.170 32.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.217 6.217 3 C 0.098 3.902 4 C -0.145 4.145 5 N -0.112 5.112 6 C -0.154 4.154 7 C 0.352 3.648 8 O -0.442 6.442 9 N -0.338 5.338 10 C 0.059 3.941 11 H 0.107 0.893 12 C -0.164 4.164 13 C 0.023 3.977 14 N -0.332 5.332 15 C -0.371 4.371 16 H 0.064 0.936 17 C -0.226 4.226 18 N -0.603 5.603 19 Si 0.775 3.225 20 H -0.186 1.186 21 H -0.195 1.195 22 H -0.242 1.242 23 C -0.037 4.037 24 C 0.034 3.966 25 H 0.100 0.900 26 O -0.368 6.368 27 C 0.118 3.882 28 F -0.093 7.093 29 C -0.185 4.185 30 H 0.146 0.854 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.227 0.773 34 H 0.257 0.743 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.238 0.762 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.009 -30.568 5.835 31.695 hybrid contribution 0.263 0.577 0.741 0.975 sum -5.747 -29.991 6.576 31.237 Atomic orbital electron populations 1.23689 0.74543 1.06981 1.03630 1.86099 1.24840 1.24345 1.86376 1.20030 0.91722 0.86832 0.91645 1.23689 1.02744 0.85447 1.02609 1.67485 1.08334 1.28427 1.06958 1.20921 0.90400 0.92918 1.11206 1.17940 0.86064 0.84203 0.76614 1.90830 1.14640 1.86930 1.51834 1.45762 1.11279 1.04276 1.72436 1.20867 0.95662 0.80222 0.97352 0.89305 1.22033 1.00886 0.97066 0.96427 1.20924 0.91935 0.88361 0.96525 1.44262 1.55590 1.19048 1.14321 1.18757 1.38788 0.87458 0.92126 0.93624 1.25904 0.99492 0.95202 1.02038 1.69955 1.40926 1.10023 1.39380 0.85972 0.79954 0.75147 0.81445 1.18570 1.19478 1.24184 1.22238 0.98081 0.96253 0.87153 1.22379 0.85976 0.94091 0.94144 0.89989 1.86382 1.27658 1.66293 1.56420 1.18429 0.78091 0.93646 0.98076 1.91604 1.28472 1.96582 1.92629 1.21002 0.93813 0.97168 1.06545 0.85385 0.90241 0.90387 0.77340 0.74290 0.91928 0.92036 0.92384 0.94794 0.92917 0.94084 0.91059 0.76199 0.79958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.71 10.50 -90.45 -0.95 -3.66 16 3 C 0.15 1.86 6.72 22.73 0.15 2.01 16 4 C 0.02 0.25 10.21 85.04 0.87 1.11 16 5 N -0.40 -8.19 9.52 -184.38 -1.76 -9.95 16 6 C -0.02 -0.44 6.75 41.86 0.28 -0.16 16 7 C 0.57 17.88 7.76 86.76 0.67 18.55 16 8 O -0.56 -21.40 14.97 -3.91 -0.06 -21.46 16 9 N -0.69 -20.42 5.04 -445.36 -2.24 -22.67 16 10 C 0.16 5.46 2.20 45.02 0.10 5.56 16 11 H 0.09 3.10 7.58 -2.39 -0.02 3.09 16 12 C -0.12 -4.56 5.50 30.53 0.17 -4.39 16 13 C 0.15 6.16 6.49 86.22 0.56 6.72 16 14 N -0.61 -28.67 2.69 -699.91 -1.88 -30.55 16 15 C -0.24 -13.69 10.03 84.03 0.84 -12.85 16 16 H 0.05 2.89 8.06 -2.91 -0.02 2.86 16 17 C -0.03 -1.82 5.25 84.86 0.45 -1.38 16 18 N -0.96 -59.39 13.97 21.65 0.30 -59.09 16 19 Si 0.95 45.35 24.35 68.60 1.67 47.02 16 20 H -0.26 -11.14 6.40 99.48 0.64 -10.51 16 21 H -0.27 -12.73 6.93 99.48 0.69 -12.04 16 22 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 23 C 0.09 3.58 3.85 86.36 0.33 3.91 16 24 C 0.10 3.11 3.38 30.67 0.10 3.21 16 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 26 O -0.56 -18.48 12.09 -148.98 -1.80 -20.28 16 27 C 0.14 3.27 7.31 22.74 0.17 3.44 16 28 F -0.11 -3.21 15.54 44.97 0.70 -2.51 16 29 C -0.16 -2.50 10.10 22.57 0.23 -2.27 16 30 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.08 -0.12 7.67 -2.39 -0.02 -0.13 16 32 H 0.08 -0.08 7.67 -2.39 -0.02 -0.10 16 33 H 0.21 1.00 6.31 -2.90 -0.02 0.98 16 34 H 0.42 11.36 7.57 -92.71 -0.70 10.65 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 2.43 7.61 -2.39 -0.02 2.41 16 37 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 38 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.04 1.61 7.21 -2.39 -0.02 1.60 16 41 H 0.07 3.04 4.51 -2.38 -0.01 3.03 16 42 H 0.39 10.98 9.08 -74.05 -0.67 10.30 16 43 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -76.30 354.59 -0.36 -76.66 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.38 Total: 21.90 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 6.03 Total: 24.58 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -5.58 Total: -122.26 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -2.81 Total: -45.40 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.70 Total: -2.51 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.67 Total: 47.02 kcal Total: -76.30 -0.36 -76.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090312762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.680 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds