Wall clock time and date at job start Tue Mar 31 2020 23:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00168 * 2 1 4 4 C 1.46900 * 110.99911 * 123.94650 * 2 1 3 5 5 H 1.08994 * 109.47521 * 301.98983 * 4 2 1 6 6 C 1.53004 * 109.47491 * 181.98313 * 4 2 1 7 7 N 1.46496 * 109.47336 * 176.56986 * 6 4 2 8 8 C 1.34776 * 120.00117 * 174.79784 * 7 6 4 9 9 O 1.21352 * 119.99836 * 359.72788 * 8 7 6 10 10 C 1.49442 * 120.00166 * 180.02562 * 8 7 6 11 11 O 1.21351 * 120.00049 * 0.02562 * 10 8 7 12 12 N 1.34776 * 120.00166 * 180.02562 * 10 8 7 13 13 C 1.46497 * 120.00471 * 180.02562 * 12 10 8 14 14 C 1.52990 * 109.47556 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47249 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00380 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00150 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00101 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99707 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46987 * 90.00329 * 19 17 15 21 21 H 1.48503 * 109.47231 * 209.99989 * 19 17 15 22 22 H 1.48499 * 109.47377 * 329.99862 * 19 17 15 23 23 C 1.50706 * 109.46993 * 61.98545 * 4 2 1 24 24 C 1.38419 * 122.54377 * 219.99825 * 23 4 2 25 25 C 1.33387 * 114.92300 * 179.97438 * 24 23 4 26 26 S 1.75886 * 109.59271 * 0.02562 * 25 24 23 27 27 C 1.33397 * 122.53466 * 39.71262 * 23 4 2 28 28 H 1.08996 * 109.47280 * 300.00627 * 1 2 3 29 29 H 1.08998 * 109.46570 * 60.00235 * 1 2 3 30 30 H 1.09000 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47229 * 190.44212 * 3 2 1 32 32 H 1.09005 * 109.46817 * 310.44334 * 3 2 1 33 33 H 1.09002 * 109.47377 * 70.43744 * 3 2 1 34 34 H 1.09005 * 109.46735 * 56.57536 * 6 4 2 35 35 H 1.08996 * 109.46963 * 296.57494 * 6 4 2 36 36 H 0.97002 * 120.00160 * 354.80324 * 7 6 4 37 37 H 0.97002 * 119.99722 * 0.02562 * 12 10 8 38 38 H 1.09005 * 109.46761 * 300.00188 * 13 12 10 39 39 H 1.09000 * 109.47446 * 59.99759 * 13 12 10 40 40 H 1.08996 * 109.47314 * 300.00012 * 14 13 12 41 41 H 1.09002 * 109.47109 * 60.00147 * 14 13 12 42 42 H 0.96999 * 119.99961 * 180.02562 * 18 17 15 43 43 H 1.07999 * 122.53449 * 359.95704 * 24 23 4 44 44 H 1.07995 * 125.20831 * 179.97438 * 25 24 23 45 45 H 1.07997 * 125.20377 * 0.02562 * 27 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7658 1.1377 5 1 1.6174 -0.3412 2.0676 6 6 3.5241 -0.7019 1.1321 7 7 4.0463 -1.3963 2.3116 8 6 5.3754 -1.5598 2.4639 9 8 6.1393 -1.1361 1.6215 10 6 5.9081 -2.2686 3.6668 11 8 5.1439 -2.6975 4.5063 12 7 7.2373 -2.4317 3.8194 13 6 7.7595 -3.1271 4.9983 14 6 9.2870 -3.1748 4.9273 15 6 9.8242 -3.8896 6.1404 16 1 9.1441 -4.2713 6.8875 17 6 11.1840 -4.0554 6.2971 18 7 11.6527 -4.6796 7.3554 19 14 12.3604 -3.3946 5.0052 20 1 12.7416 -2.0012 5.3493 21 1 13.5774 -4.2446 4.9628 22 1 11.6975 -3.4127 3.6765 23 6 1.5524 -2.2019 1.0246 24 6 1.1480 -2.9448 2.1203 25 6 0.7869 -4.1993 1.8465 26 16 0.9534 -4.4978 0.1211 27 6 1.5150 -2.8516 -0.1398 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.0692 1.3484 -0.1862 32 1 1.5033 1.9495 -0.7821 33 1 1.8045 1.8340 0.9683 34 1 3.8442 0.3399 1.1525 35 1 3.9045 -1.1813 0.2301 36 1 3.4355 -1.7385 2.9829 37 1 7.8481 -2.0886 3.1485 38 1 7.4544 -2.5944 5.8990 39 1 7.3648 -4.1427 5.0256 40 1 9.5925 -3.7072 4.0266 41 1 9.6814 -2.1590 4.9004 42 1 12.6094 -4.7959 7.4658 43 1 1.1267 -2.5394 3.1211 44 1 0.4455 -4.9217 2.5731 45 1 1.7898 -2.4317 -1.0961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117017501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:59 Heat of formation + Delta-G solvation = -26.315862 kcal Electronic energy + Delta-G solvation = -26578.064095 eV Core-core repulsion = 22722.766039 eV Total energy + Delta-G solvation = -3855.298056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66892 -39.70777 -38.24113 -36.83470 -35.51957 -34.62770 -32.80376 -30.81417 -30.28346 -29.26910 -27.74594 -26.25284 -24.94487 -24.17547 -22.90695 -21.11677 -20.88900 -20.25832 -19.08866 -18.27257 -18.08644 -17.12885 -16.79103 -16.17386 -15.97735 -15.62422 -15.46121 -14.94521 -14.75452 -14.49549 -14.36450 -14.17350 -13.93116 -13.54358 -13.22186 -13.15498 -13.02485 -12.81931 -12.66610 -12.61427 -12.26820 -12.09662 -11.98955 -11.67584 -11.59722 -11.49036 -11.24684 -10.98324 -10.44241 -10.30469 -9.95878 -9.47291 -9.40240 -9.31151 -9.04516 -8.90463 -8.77043 -8.70100 -8.61267 -6.12422 -4.13098 0.74592 1.39273 1.55273 1.71795 2.34458 2.39998 3.26702 3.34731 3.36695 3.36924 3.39895 3.89682 4.27269 4.37842 4.46990 4.65975 4.67954 4.73902 4.82602 4.92783 5.04845 5.09755 5.15733 5.20730 5.30820 5.34570 5.48046 5.49562 5.52528 5.73532 5.97047 5.99822 6.01455 6.10436 6.11560 6.47178 6.48251 6.51182 6.51904 6.93742 7.09612 7.18655 7.56141 7.62609 7.85428 8.21472 8.41769 8.90846 9.47567 11.00309 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.002204 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.223282 B =12701.098517 C =13606.743982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.534 5.534 3 C 0.016 3.984 4 C 0.135 3.865 5 H 0.060 0.940 6 C 0.126 3.874 7 N -0.701 5.701 8 C 0.510 3.490 9 O -0.520 6.520 10 C 0.499 3.501 11 O -0.529 6.529 12 N -0.691 5.691 13 C 0.127 3.873 14 C -0.024 4.024 15 C -0.524 4.524 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.265 1.265 23 C -0.109 4.109 24 C -0.132 4.132 25 C -0.207 4.207 26 S 0.093 5.907 27 C -0.177 4.177 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.411 0.589 37 H 0.409 0.591 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.265 0.735 43 H 0.140 0.860 44 H 0.165 0.835 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.446 8.985 -17.487 32.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.258 5.258 3 C -0.132 4.132 4 C 0.024 3.976 5 H 0.077 0.923 6 C 0.002 3.998 7 N -0.355 5.355 8 C 0.291 3.709 9 O -0.396 6.396 10 C 0.279 3.721 11 O -0.406 6.406 12 N -0.342 5.342 13 C 0.006 3.994 14 C -0.062 4.062 15 C -0.562 4.562 16 H 0.095 0.905 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.122 4.122 24 C -0.163 4.163 25 C -0.342 4.342 26 S 0.356 5.644 27 C -0.313 4.313 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.248 0.752 37 H 0.244 0.756 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.158 0.842 44 H 0.183 0.817 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -26.361 7.413 -18.768 33.198 hybrid contribution 0.688 1.848 1.126 2.271 sum -25.673 9.260 -17.642 32.498 Atomic orbital electron populations 1.22416 0.86454 1.02725 1.00765 1.61919 1.08513 1.13882 1.41536 1.22535 1.01625 0.88242 1.00824 1.20412 0.93759 0.90241 0.93223 0.92254 1.21481 0.91570 0.97820 0.88932 1.45597 1.06914 1.58130 1.24866 1.20385 0.82935 0.80436 0.87193 1.90755 1.57031 1.48601 1.43181 1.19935 0.84108 0.81586 0.86521 1.90741 1.57075 1.49466 1.43332 1.46200 1.05859 1.56071 1.26032 1.21709 0.96473 0.96170 0.85066 1.19824 0.89852 0.97571 0.98910 1.20874 0.92798 1.36978 1.05574 0.90546 1.24988 0.98249 0.94562 0.95411 1.69897 1.13764 1.42010 1.27873 0.86767 0.80626 0.79130 0.82687 1.20162 1.21230 1.18928 1.18644 1.04502 0.96246 0.92759 1.20056 1.02469 0.93993 0.99781 1.25575 1.09252 1.00671 0.98705 1.84403 1.64484 1.12168 1.03302 1.25499 1.07199 0.96042 1.02546 0.95457 0.91050 0.90867 0.90523 0.90902 0.95099 0.90488 0.89703 0.75211 0.75569 0.91276 0.91249 0.95704 0.96153 0.92507 0.84240 0.81740 0.81259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.28 60.07 0.56 0.70 16 2 N -0.53 -3.55 4.45 -244.58 -1.09 -4.64 16 3 C 0.02 0.09 8.88 60.07 0.53 0.62 16 4 C 0.13 1.01 1.87 -68.86 -0.13 0.88 16 5 H 0.06 0.42 8.08 -51.93 -0.42 0.01 16 6 C 0.13 1.16 4.76 -4.04 -0.02 1.14 16 7 N -0.70 -7.86 5.29 -60.73 -0.32 -8.18 16 8 C 0.51 7.36 7.89 -11.59 -0.09 7.27 16 9 O -0.52 -8.42 16.47 5.50 0.09 -8.33 16 10 C 0.50 8.28 7.89 -11.59 -0.09 8.19 16 11 O -0.53 -9.69 16.48 5.50 0.09 -9.60 16 12 N -0.69 -11.93 5.55 -60.74 -0.34 -12.26 16 13 C 0.13 2.55 5.61 -4.05 -0.02 2.53 16 14 C -0.02 -0.54 4.16 -27.89 -0.12 -0.66 16 15 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 16 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 19 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 23 C -0.11 -0.88 3.29 -106.24 -0.35 -1.23 16 24 C -0.13 -1.08 9.28 -41.21 -0.38 -1.46 16 25 C -0.21 -1.67 11.23 29.04 0.33 -1.34 16 26 S 0.09 0.74 23.34 -107.50 -2.51 -1.77 16 27 C -0.18 -1.45 9.79 29.04 0.28 -1.16 16 28 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.07 0.46 6.55 -51.93 -0.34 0.12 16 31 H 0.08 0.46 6.54 -51.93 -0.34 0.12 16 32 H 0.07 0.34 8.06 -51.93 -0.42 -0.08 16 33 H 0.03 0.17 8.12 -51.93 -0.42 -0.25 16 34 H 0.08 0.68 6.27 -51.93 -0.33 0.36 16 35 H 0.08 0.89 8.13 -51.93 -0.42 0.46 16 36 H 0.41 4.31 7.14 -40.82 -0.29 4.02 16 37 H 0.41 6.56 7.94 -40.82 -0.32 6.24 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 41 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.17 1.30 8.02 -52.49 -0.42 0.88 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -31.93 387.42 -8.68 -40.61 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.61 Total: 5.74 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 0.07 Total: 2.49 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.97 Total: -51.48 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.18 Total: -17.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.93 -8.68 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117017501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.295 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds