Wall clock time and date at job start Tue Mar 31 2020 23:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00168 * 2 1 4 4 C 1.46900 * 110.99911 * 123.94650 * 2 1 3 5 5 H 1.08994 * 109.47521 * 301.98983 * 4 2 1 6 6 C 1.53004 * 109.47491 * 181.98313 * 4 2 1 7 7 N 1.46496 * 109.47336 * 176.56986 * 6 4 2 8 8 C 1.34776 * 120.00117 * 174.79784 * 7 6 4 9 9 O 1.21352 * 119.99836 * 359.72788 * 8 7 6 10 10 C 1.49442 * 120.00166 * 180.02562 * 8 7 6 11 11 O 1.21351 * 120.00049 * 0.02562 * 10 8 7 12 12 N 1.34776 * 120.00166 * 180.02562 * 10 8 7 13 13 C 1.46497 * 120.00471 * 180.02562 * 12 10 8 14 14 C 1.52990 * 109.47556 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47249 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00380 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00150 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00101 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99707 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46987 * 90.00329 * 19 17 15 21 21 H 1.48503 * 109.47231 * 209.99989 * 19 17 15 22 22 H 1.48499 * 109.47377 * 329.99862 * 19 17 15 23 23 C 1.50706 * 109.46993 * 61.98545 * 4 2 1 24 24 C 1.38419 * 122.54377 * 219.99825 * 23 4 2 25 25 C 1.33387 * 114.92300 * 179.97438 * 24 23 4 26 26 S 1.75886 * 109.59271 * 0.02562 * 25 24 23 27 27 C 1.33397 * 122.53466 * 39.71262 * 23 4 2 28 28 H 1.08996 * 109.47280 * 300.00627 * 1 2 3 29 29 H 1.08998 * 109.46570 * 60.00235 * 1 2 3 30 30 H 1.09000 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47229 * 190.44212 * 3 2 1 32 32 H 1.09005 * 109.46817 * 310.44334 * 3 2 1 33 33 H 1.09002 * 109.47377 * 70.43744 * 3 2 1 34 34 H 1.09005 * 109.46735 * 56.57536 * 6 4 2 35 35 H 1.08996 * 109.46963 * 296.57494 * 6 4 2 36 36 H 0.97002 * 120.00160 * 354.80324 * 7 6 4 37 37 H 0.97002 * 119.99722 * 0.02562 * 12 10 8 38 38 H 1.09005 * 109.46761 * 300.00188 * 13 12 10 39 39 H 1.09000 * 109.47446 * 59.99759 * 13 12 10 40 40 H 1.08996 * 109.47314 * 300.00012 * 14 13 12 41 41 H 1.09002 * 109.47109 * 60.00147 * 14 13 12 42 42 H 0.96999 * 119.99961 * 180.02562 * 18 17 15 43 43 H 1.07999 * 122.53449 * 359.95704 * 24 23 4 44 44 H 1.07995 * 125.20831 * 179.97438 * 25 24 23 45 45 H 1.07997 * 125.20377 * 0.02562 * 27 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7658 1.1377 5 1 1.6174 -0.3412 2.0676 6 6 3.5241 -0.7019 1.1321 7 7 4.0463 -1.3963 2.3116 8 6 5.3754 -1.5598 2.4639 9 8 6.1393 -1.1361 1.6215 10 6 5.9081 -2.2686 3.6668 11 8 5.1439 -2.6975 4.5063 12 7 7.2373 -2.4317 3.8194 13 6 7.7595 -3.1271 4.9983 14 6 9.2870 -3.1748 4.9273 15 6 9.8242 -3.8896 6.1404 16 1 9.1441 -4.2713 6.8875 17 6 11.1840 -4.0554 6.2971 18 7 11.6527 -4.6796 7.3554 19 14 12.3604 -3.3946 5.0052 20 1 12.7416 -2.0012 5.3493 21 1 13.5774 -4.2446 4.9628 22 1 11.6975 -3.4127 3.6765 23 6 1.5524 -2.2019 1.0246 24 6 1.1480 -2.9448 2.1203 25 6 0.7869 -4.1993 1.8465 26 16 0.9534 -4.4978 0.1211 27 6 1.5150 -2.8516 -0.1398 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.0692 1.3484 -0.1862 32 1 1.5033 1.9495 -0.7821 33 1 1.8045 1.8340 0.9683 34 1 3.8442 0.3399 1.1525 35 1 3.9045 -1.1813 0.2301 36 1 3.4355 -1.7385 2.9829 37 1 7.8481 -2.0886 3.1485 38 1 7.4544 -2.5944 5.8990 39 1 7.3648 -4.1427 5.0256 40 1 9.5925 -3.7072 4.0266 41 1 9.6814 -2.1590 4.9004 42 1 12.6094 -4.7959 7.4658 43 1 1.1267 -2.5394 3.1211 44 1 0.4455 -4.9217 2.5731 45 1 1.7898 -2.4317 -1.0961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117017501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:59 Heat of formation + Delta-G solvation = -50.271436 kcal Electronic energy + Delta-G solvation = -26579.102887 eV Core-core repulsion = 22722.766039 eV Total energy + Delta-G solvation = -3856.336848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79438 -40.51424 -39.45078 -37.40021 -36.96095 -35.77451 -34.76588 -32.12570 -31.48777 -29.94533 -28.24788 -27.67367 -26.10491 -24.82782 -24.08209 -22.64296 -21.76439 -21.44922 -19.92292 -19.29962 -19.02123 -18.72252 -17.99630 -17.22823 -17.03968 -16.50708 -16.35044 -16.22291 -15.93136 -15.87867 -15.36397 -15.12732 -14.94811 -14.73907 -14.55192 -14.37721 -13.82268 -13.70885 -13.39592 -13.38132 -13.22373 -13.06852 -12.89282 -12.77491 -12.66222 -12.54390 -12.23995 -12.22642 -12.19440 -11.78346 -11.60203 -11.51172 -10.79011 -10.74906 -10.37350 -10.23337 -9.66910 -9.39420 -9.32573 -8.30198 -6.36902 0.12406 0.30995 0.78137 1.10370 1.25732 1.39718 1.41455 1.52616 1.72667 2.10991 2.36422 2.52956 3.01312 3.05026 3.42662 3.64094 3.84001 4.09458 4.18241 4.26447 4.31096 4.38938 4.43164 4.50174 4.58541 4.65861 4.70871 4.72421 4.75382 4.84337 4.98362 5.03093 5.07020 5.10797 5.13275 5.29425 5.37172 5.41094 5.51008 5.58681 5.86817 5.97840 6.02564 6.20410 6.32873 6.66717 6.72759 6.91245 7.27661 8.86011 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.002204 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.223282 B =12701.098517 C =13606.743982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.540 5.540 3 C 0.014 3.986 4 C 0.143 3.857 5 H 0.067 0.933 6 C 0.128 3.872 7 N -0.684 5.684 8 C 0.517 3.483 9 O -0.538 6.538 10 C 0.500 3.500 11 O -0.547 6.547 12 N -0.688 5.688 13 C 0.142 3.858 14 C -0.017 4.017 15 C -0.536 4.536 16 H 0.036 0.964 17 C 0.007 3.993 18 N -0.947 5.947 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.241 1.241 23 C -0.113 4.113 24 C -0.142 4.142 25 C -0.215 4.215 26 S 0.089 5.911 27 C -0.182 4.182 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.417 0.583 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.268 0.732 43 H 0.150 0.850 44 H 0.177 0.823 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.044 10.566 -19.560 35.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.264 5.264 3 C -0.133 4.133 4 C 0.031 3.969 5 H 0.084 0.916 6 C 0.004 3.996 7 N -0.337 5.337 8 C 0.297 3.703 9 O -0.415 6.415 10 C 0.281 3.719 11 O -0.426 6.426 12 N -0.339 5.339 13 C 0.019 3.981 14 C -0.055 4.055 15 C -0.574 4.574 16 H 0.054 0.946 17 C -0.190 4.190 18 N -0.587 5.587 19 Si 0.775 3.225 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.164 1.164 23 C -0.125 4.125 24 C -0.172 4.172 25 C -0.351 4.351 26 S 0.352 5.648 27 C -0.318 4.318 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.254 0.746 37 H 0.254 0.746 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.167 0.833 44 H 0.194 0.806 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -27.016 9.011 -20.865 35.305 hybrid contribution 0.742 1.323 1.822 2.370 sum -26.274 10.334 -19.043 34.056 Atomic orbital electron populations 1.22407 0.85786 1.02445 1.01421 1.61918 1.09089 1.14420 1.41003 1.22573 1.01510 0.87787 1.01442 1.20305 0.92382 0.90164 0.94001 0.91561 1.21598 0.92745 0.97784 0.87448 1.45574 1.05804 1.56992 1.25354 1.19874 0.83819 0.80472 0.86147 1.90756 1.57622 1.49657 1.43437 1.20314 0.83558 0.81066 0.86969 1.90735 1.57452 1.50156 1.44226 1.45973 1.06505 1.56086 1.25378 1.21277 0.94889 0.95907 0.85981 1.19693 0.91438 0.97569 0.96813 1.21197 0.92637 1.37043 1.06517 0.94556 1.25994 1.00373 0.94837 0.97820 1.70054 1.14385 1.43917 1.30364 0.85628 0.77845 0.78585 0.80408 1.19046 1.21181 1.16442 1.18748 1.04495 0.96585 0.92720 1.20248 1.02522 0.94116 1.00330 1.25825 1.09231 1.01081 0.98926 1.84404 1.64511 1.12285 1.03557 1.25596 1.07303 0.96104 1.02816 0.95168 0.90008 0.91609 0.90858 0.89788 0.94781 0.89603 0.90573 0.74609 0.74571 0.92151 0.92300 0.94671 0.94708 0.92316 0.83264 0.80562 0.80941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.28 127.69 1.19 1.45 16 2 N -0.54 -6.13 4.45 -927.72 -4.13 -10.26 16 3 C 0.01 0.13 8.88 127.69 1.13 1.27 16 4 C 0.14 1.87 1.87 44.17 0.08 1.95 16 5 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 6 C 0.13 2.12 4.76 86.38 0.41 2.53 16 7 N -0.68 -14.13 5.29 -464.42 -2.46 -16.59 16 8 C 0.52 14.06 7.89 87.27 0.69 14.75 16 9 O -0.54 -16.40 16.47 -3.25 -0.05 -16.45 16 10 C 0.50 15.96 7.89 87.27 0.69 16.65 16 11 O -0.55 -19.56 16.48 -3.25 -0.05 -19.61 16 12 N -0.69 -22.76 5.55 -464.43 -2.58 -25.34 16 13 C 0.14 5.63 5.61 86.38 0.48 6.12 16 14 C -0.02 -0.77 4.16 29.85 0.12 -0.65 16 15 C -0.54 -30.12 9.66 25.60 0.25 -29.87 16 16 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 17 C 0.01 0.42 5.47 84.66 0.46 0.88 16 18 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 19 Si 0.95 42.77 27.47 68.60 1.88 44.65 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.24 -9.85 6.54 99.48 0.65 -9.19 16 23 C -0.11 -1.67 3.29 -20.92 -0.07 -1.74 16 24 C -0.14 -2.12 9.28 21.21 0.20 -1.92 16 25 C -0.22 -3.25 11.23 66.72 0.75 -2.50 16 26 S 0.09 1.35 23.34 -56.49 -1.32 0.03 16 27 C -0.18 -2.78 9.79 66.72 0.65 -2.13 16 28 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.07 0.74 6.55 -2.39 -0.02 0.72 16 31 H 0.07 0.73 6.54 -2.39 -0.02 0.71 16 32 H 0.08 0.59 8.06 -2.38 -0.02 0.57 16 33 H 0.03 0.30 8.12 -2.39 -0.02 0.28 16 34 H 0.09 1.33 6.27 -2.38 -0.01 1.32 16 35 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 36 H 0.42 7.99 7.14 -92.71 -0.66 7.33 16 37 H 0.42 12.52 7.94 -92.71 -0.74 11.78 16 38 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.04 1.50 7.20 -2.39 -0.02 1.48 16 41 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 45 H 0.17 2.46 8.02 -2.91 -0.02 2.43 16 Total: -1.00 -68.41 387.42 -1.80 -70.21 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.43 Total: 24.88 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 7.04 Total: 6.78 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -8.87 Total: -110.47 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.11 Total: -36.06 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.32 Total: 0.03 kcal Total: -68.41 -1.80 -70.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117017501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.934 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds