Wall clock time and date at job start Tue Mar 31 2020 23:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35965 * 116.99918 * 2 1 4 4 C 1.38315 * 119.99291 * 359.71977 * 3 2 1 5 5 C 1.39606 * 119.81828 * 179.73636 * 4 3 2 6 6 C 1.47735 * 120.09486 * 180.25184 * 5 4 3 7 7 O 1.21568 * 120.00250 * 0.30638 * 6 5 4 8 8 N 1.34782 * 119.99957 * 180.31688 * 6 5 4 9 9 C 1.46493 * 120.00066 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47241 * 179.97438 * 9 8 6 11 11 N 1.46897 * 109.47169 * 179.97438 * 10 9 8 12 12 C 1.46900 * 110.99892 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46947 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00043 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99848 * 180.02562 * 13 12 11 16 16 C 1.37091 * 120.00221 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99613 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00338 * 180.02562 * 16 15 13 19 19 N 1.31409 * 119.99922 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00081 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47519 * 89.99775 * 20 18 16 22 22 H 1.48506 * 109.47286 * 209.99558 * 20 18 16 23 23 H 1.48501 * 109.46990 * 329.99251 * 20 18 16 24 24 C 1.39642 * 119.80678 * 0.55926 * 5 4 3 25 25 C 1.37893 * 119.98247 * 359.71650 * 24 5 4 26 26 C 1.38531 * 120.17700 * 359.97438 * 25 24 5 27 27 F 1.35102 * 119.89821 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.47382 * 300.00462 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00569 * 1 2 3 31 31 H 1.07999 * 120.09124 * 0.02562 * 4 3 2 32 32 H 0.96998 * 119.99648 * 359.97438 * 8 6 5 33 33 H 1.09005 * 109.47068 * 299.99368 * 9 8 6 34 34 H 1.08995 * 109.47628 * 59.99508 * 9 8 6 35 35 H 1.08991 * 109.46862 * 300.00084 * 10 9 8 36 36 H 1.09003 * 109.46513 * 59.99930 * 10 9 8 37 37 H 1.00900 * 110.99937 * 56.04677 * 11 10 9 38 38 H 1.08999 * 109.47072 * 299.99818 * 12 11 10 39 39 H 1.08996 * 109.47092 * 60.00067 * 12 11 10 40 40 H 0.97006 * 120.00088 * 0.02562 * 15 13 12 41 41 H 0.96997 * 120.00160 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.01183 * 179.68764 * 24 5 4 43 43 H 1.07997 * 119.91293 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2928 2.3714 -0.0059 5 6 1.9304 3.6133 -0.0003 6 6 1.1315 4.8561 -0.0009 7 8 -0.0828 4.7982 -0.0006 8 7 1.7490 6.0541 -0.0019 9 6 0.9569 7.2865 -0.0031 10 6 1.8946 8.4955 -0.0035 11 7 1.1004 9.7312 -0.0052 12 6 1.9694 10.9156 -0.0063 13 6 1.1210 12.1611 -0.0074 14 8 -0.0885 12.0710 -0.0079 15 7 1.7063 13.3751 -0.0090 16 6 0.9346 14.5082 -0.0096 17 1 -0.1424 14.4280 -0.0091 18 6 1.5380 15.7599 -0.0118 19 7 2.8485 15.8575 -0.0128 20 14 0.4864 17.3037 -0.0118 21 1 0.2098 17.7143 1.3882 22 1 1.2089 18.3948 -0.7139 23 1 -0.7953 17.0296 -0.7098 24 6 3.3253 3.6775 -0.0006 25 6 4.0686 2.5161 -0.0006 26 6 3.4352 1.2840 0.0004 27 9 4.1690 0.1496 0.0009 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 0.2142 2.3164 -0.0100 32 1 2.7179 6.1003 -0.0019 33 1 0.3284 7.3135 -0.8932 34 1 0.3281 7.3151 0.8868 35 1 2.5229 8.4682 0.8868 36 1 2.5237 8.4670 -0.8932 37 1 0.4617 9.7516 0.7756 38 1 2.5982 10.9056 0.8840 39 1 2.5989 10.9035 -0.8960 40 1 2.6737 13.4472 -0.0098 41 1 3.2697 16.7312 -0.0140 42 1 3.8219 4.6366 -0.0014 43 1 5.1473 2.5670 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134181074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:03 Heat of formation + Delta-G solvation = -122.008263 kcal Electronic energy + Delta-G solvation = -27114.202959 eV Core-core repulsion = 22688.542193 eV Total energy + Delta-G solvation = -4425.660766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.33024 -40.92096 -39.73198 -38.36453 -37.68795 -36.38687 -34.51520 -33.79972 -31.61693 -31.26298 -30.98852 -29.35972 -27.86932 -26.14109 -24.46973 -23.63693 -23.07004 -22.18758 -21.03039 -19.37156 -19.13899 -17.94522 -17.89168 -17.41910 -17.04750 -16.71752 -16.29230 -16.10793 -15.88465 -15.56988 -15.27365 -15.12044 -14.85517 -14.70291 -14.51158 -14.01558 -13.98062 -13.51857 -13.47933 -13.33721 -13.19865 -12.84548 -12.45333 -12.26203 -11.97062 -11.84067 -11.71447 -11.55721 -11.50704 -11.47310 -11.05367 -10.41012 -10.39032 -10.24035 -9.60323 -9.53674 -9.38293 -8.83528 -8.54313 -8.17422 -7.99304 -6.44415 -3.85276 0.10670 0.61001 2.30075 2.52642 2.68345 3.16406 3.20100 3.25444 3.31586 3.58764 3.86886 4.04239 4.06009 4.17630 4.34776 4.39028 4.43941 4.65049 4.67953 4.78110 4.88366 4.92072 5.01987 5.13388 5.20558 5.23054 5.31680 5.31983 5.45627 5.58155 5.67754 5.75251 5.83689 5.89723 5.91837 6.06159 6.21524 6.63936 7.02331 7.12011 7.51750 7.53032 7.81132 8.03297 8.58023 9.15185 9.50870 10.02127 10.73247 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035103 B = 0.001414 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.471587 B =19792.947186 C =20557.332492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.089 3.911 4 C -0.124 4.124 5 C -0.102 4.102 6 C 0.559 3.441 7 O -0.530 6.530 8 N -0.720 5.720 9 C 0.119 3.881 10 C 0.049 3.951 11 N -0.665 5.665 12 C 0.052 3.948 13 C 0.439 3.561 14 O -0.582 6.582 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.269 1.269 24 C -0.094 4.094 25 C -0.121 4.121 26 C 0.093 3.907 27 F -0.127 7.127 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.153 0.847 32 H 0.400 0.600 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.353 0.647 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.141 0.859 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 -29.896 0.923 30.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.221 6.221 3 C 0.043 3.957 4 C -0.144 4.144 5 C -0.106 4.106 6 C 0.345 3.655 7 O -0.407 6.407 8 N -0.373 5.373 9 C -0.004 4.004 10 C -0.082 4.082 11 N -0.299 5.299 12 C -0.080 4.080 13 C 0.225 3.775 14 O -0.466 6.466 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.113 4.113 25 C -0.140 4.140 26 C 0.073 3.927 27 F -0.105 7.105 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.171 0.829 32 H 0.236 0.764 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.172 0.828 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.158 0.842 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.918 -30.014 0.238 30.269 hybrid contribution 0.988 0.858 0.902 1.589 sum 4.907 -29.156 1.140 29.587 Atomic orbital electron populations 1.23217 0.77231 1.04649 1.02128 1.86154 1.22268 1.25109 1.88609 1.18873 0.90757 0.85811 1.00259 1.21257 1.01426 0.89873 1.01807 1.19793 0.93514 0.93327 1.03960 1.18050 0.87437 0.83201 0.76817 1.90816 1.13513 1.87210 1.49194 1.45802 1.10603 1.05712 1.75146 1.21351 0.93922 0.81363 1.03784 1.22084 0.95311 0.89644 1.01115 1.59924 1.18809 0.99428 1.51698 1.21671 0.94847 0.90140 1.01356 1.19768 0.88812 0.84274 0.84690 1.90534 1.14262 1.86471 1.55356 1.41853 1.09420 1.04364 1.64290 1.19718 0.92701 0.82933 1.47648 0.87870 1.25263 0.96007 0.99378 0.97241 1.69607 1.08460 1.25689 1.50534 0.85846 0.79584 0.80420 0.78381 1.20415 1.20910 1.19375 1.21097 0.92271 0.98646 0.99317 1.20967 1.01488 0.89745 1.01800 1.17221 0.85993 0.83123 1.06386 1.91532 1.76492 1.48709 1.93812 0.91997 0.87579 0.91973 0.82913 0.76447 0.89818 0.91005 0.94819 0.90363 0.82751 0.93682 0.89428 0.77453 0.91854 0.84175 0.83102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.64 10.36 -19.63 -0.20 -2.84 16 3 C 0.09 0.77 6.69 -39.24 -0.26 0.51 16 4 C -0.12 -1.05 8.58 -39.04 -0.33 -1.39 16 5 C -0.10 -0.85 5.87 -104.98 -0.62 -1.46 16 6 C 0.56 5.82 7.77 -12.38 -0.10 5.73 16 7 O -0.53 -7.55 16.34 5.31 0.09 -7.46 16 8 N -0.72 -6.03 5.51 -61.29 -0.34 -6.36 16 9 C 0.12 1.24 5.93 -4.04 -0.02 1.22 16 10 C 0.05 0.50 5.80 -3.82 -0.02 0.48 16 11 N -0.67 -10.02 6.13 -115.06 -0.70 -10.73 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 C 0.44 10.14 7.82 -10.98 -0.09 10.06 16 14 O -0.58 -15.64 15.78 5.55 0.09 -15.56 16 15 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 16 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 20 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 C -0.09 -0.54 9.53 -39.18 -0.37 -0.91 16 25 C -0.12 -0.71 10.00 -39.60 -0.40 -1.11 16 26 C 0.09 0.77 7.31 -39.16 -0.29 0.48 16 27 F -0.13 -1.19 17.10 2.25 0.04 -1.15 16 28 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 29 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.15 1.25 5.88 -52.49 -0.31 0.94 16 32 H 0.40 2.08 6.50 -40.82 -0.27 1.82 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.35 5.53 8.43 -39.29 -0.33 5.20 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.14 0.40 6.39 -52.48 -0.34 0.06 16 43 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -34.79 377.83 -6.73 -41.52 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.25 Total: 10.99 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -1.78 Total: 7.60 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.38 Total: -54.62 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.03 Total: -25.86 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.79 -6.73 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134181074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.492 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds