Wall clock time and date at job start Tue Mar 31 2020 23:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35965 * 116.99918 * 2 1 4 4 C 1.38315 * 119.99291 * 359.71977 * 3 2 1 5 5 C 1.39606 * 119.81828 * 179.73636 * 4 3 2 6 6 C 1.47735 * 120.09486 * 180.25184 * 5 4 3 7 7 O 1.21568 * 120.00250 * 0.30638 * 6 5 4 8 8 N 1.34782 * 119.99957 * 180.31688 * 6 5 4 9 9 C 1.46493 * 120.00066 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47241 * 179.97438 * 9 8 6 11 11 N 1.46897 * 109.47169 * 179.97438 * 10 9 8 12 12 C 1.46900 * 110.99892 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46947 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00043 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99848 * 180.02562 * 13 12 11 16 16 C 1.37091 * 120.00221 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99613 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00338 * 180.02562 * 16 15 13 19 19 N 1.31409 * 119.99922 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00081 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47519 * 89.99775 * 20 18 16 22 22 H 1.48506 * 109.47286 * 209.99558 * 20 18 16 23 23 H 1.48501 * 109.46990 * 329.99251 * 20 18 16 24 24 C 1.39642 * 119.80678 * 0.55926 * 5 4 3 25 25 C 1.37893 * 119.98247 * 359.71650 * 24 5 4 26 26 C 1.38531 * 120.17700 * 359.97438 * 25 24 5 27 27 F 1.35102 * 119.89821 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.47382 * 300.00462 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00569 * 1 2 3 31 31 H 1.07999 * 120.09124 * 0.02562 * 4 3 2 32 32 H 0.96998 * 119.99648 * 359.97438 * 8 6 5 33 33 H 1.09005 * 109.47068 * 299.99368 * 9 8 6 34 34 H 1.08995 * 109.47628 * 59.99508 * 9 8 6 35 35 H 1.08991 * 109.46862 * 300.00084 * 10 9 8 36 36 H 1.09003 * 109.46513 * 59.99930 * 10 9 8 37 37 H 1.00900 * 110.99937 * 56.04677 * 11 10 9 38 38 H 1.08999 * 109.47072 * 299.99818 * 12 11 10 39 39 H 1.08996 * 109.47092 * 60.00067 * 12 11 10 40 40 H 0.97006 * 120.00088 * 0.02562 * 15 13 12 41 41 H 0.96997 * 120.00160 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.01183 * 179.68764 * 24 5 4 43 43 H 1.07997 * 119.91293 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2928 2.3714 -0.0059 5 6 1.9304 3.6133 -0.0003 6 6 1.1315 4.8561 -0.0009 7 8 -0.0828 4.7982 -0.0006 8 7 1.7490 6.0541 -0.0019 9 6 0.9569 7.2865 -0.0031 10 6 1.8946 8.4955 -0.0035 11 7 1.1004 9.7312 -0.0052 12 6 1.9694 10.9156 -0.0063 13 6 1.1210 12.1611 -0.0074 14 8 -0.0885 12.0710 -0.0079 15 7 1.7063 13.3751 -0.0090 16 6 0.9346 14.5082 -0.0096 17 1 -0.1424 14.4280 -0.0091 18 6 1.5380 15.7599 -0.0118 19 7 2.8485 15.8575 -0.0128 20 14 0.4864 17.3037 -0.0118 21 1 0.2098 17.7143 1.3882 22 1 1.2089 18.3948 -0.7139 23 1 -0.7953 17.0296 -0.7098 24 6 3.3253 3.6775 -0.0006 25 6 4.0686 2.5161 -0.0006 26 6 3.4352 1.2840 0.0004 27 9 4.1690 0.1496 0.0009 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 0.2142 2.3164 -0.0100 32 1 2.7179 6.1003 -0.0019 33 1 0.3284 7.3135 -0.8932 34 1 0.3281 7.3151 0.8868 35 1 2.5229 8.4682 0.8868 36 1 2.5237 8.4670 -0.8932 37 1 0.4617 9.7516 0.7756 38 1 2.5982 10.9056 0.8840 39 1 2.5989 10.9035 -0.8960 40 1 2.6737 13.4472 -0.0098 41 1 3.2697 16.7312 -0.0140 42 1 3.8219 4.6366 -0.0014 43 1 5.1473 2.5670 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134181074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:02 Heat of formation + Delta-G solvation = -149.887278 kcal Electronic energy + Delta-G solvation = -27115.411883 eV Core-core repulsion = 22688.542193 eV Total energy + Delta-G solvation = -4426.869691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.97507 -41.57467 -40.45025 -40.12280 -38.29336 -37.47053 -36.00745 -35.29772 -33.26070 -32.25921 -31.58432 -30.33511 -28.45111 -27.58384 -25.79676 -24.63536 -23.62978 -23.04166 -21.78198 -21.08465 -19.93656 -19.80805 -18.54677 -18.07896 -17.86644 -17.51090 -17.31608 -17.17690 -16.91803 -16.55542 -16.25952 -16.15146 -15.92028 -15.67960 -15.33244 -15.32303 -15.26177 -14.87607 -14.35671 -14.08182 -14.02596 -13.89363 -13.51589 -13.37196 -13.28645 -12.92923 -12.72070 -12.56752 -12.42312 -12.39742 -12.36417 -12.19499 -12.11654 -11.49900 -11.25542 -10.35100 -10.30837 -10.06753 -10.00307 -9.41314 -9.35643 -8.46020 -5.94428 -0.51455 0.09165 1.38846 1.43111 1.55405 1.59897 1.86200 2.06893 2.08332 2.31039 2.56754 2.98699 3.03818 3.21694 3.48874 3.56693 3.65920 3.84952 3.88295 3.96241 4.13922 4.26968 4.29079 4.33936 4.41985 4.48967 4.53049 4.61351 4.64997 4.70272 4.75789 4.90523 4.94715 4.98571 5.05271 5.25545 5.42149 5.45437 5.86378 6.08709 6.09617 6.34789 6.42290 6.61482 7.08226 7.14012 7.57773 8.13550 8.71191 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035103 B = 0.001414 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.471587 B =19792.947186 C =20557.332492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.077 3.923 4 C -0.133 4.133 5 C -0.114 4.114 6 C 0.557 3.443 7 O -0.578 6.578 8 N -0.702 5.702 9 C 0.127 3.873 10 C 0.057 3.943 11 N -0.687 5.687 12 C 0.069 3.931 13 C 0.434 3.566 14 O -0.626 6.626 15 N -0.572 5.572 16 C -0.336 4.336 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.918 5.918 20 Si 0.991 3.009 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.275 1.275 24 C -0.079 4.079 25 C -0.109 4.109 26 C 0.076 3.924 27 F -0.137 7.137 28 H 0.064 0.936 29 H 0.126 0.874 30 H 0.064 0.936 31 H 0.147 0.853 32 H 0.419 0.581 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.346 0.654 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.398 0.602 41 H 0.278 0.722 42 H 0.177 0.823 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.866 -29.865 1.030 30.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.031 3.969 4 C -0.153 4.153 5 C -0.117 4.117 6 C 0.345 3.655 7 O -0.458 6.458 8 N -0.355 5.355 9 C 0.002 3.998 10 C -0.072 4.072 11 N -0.320 5.320 12 C -0.064 4.064 13 C 0.222 3.778 14 O -0.513 6.513 15 N -0.210 5.210 16 C -0.466 4.466 17 H 0.095 0.905 18 C -0.211 4.211 19 N -0.559 5.559 20 Si 0.815 3.185 21 H -0.196 1.196 22 H -0.195 1.195 23 H -0.200 1.200 24 C -0.097 4.097 25 C -0.128 4.128 26 C 0.056 3.944 27 F -0.116 7.116 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.083 0.917 31 H 0.164 0.836 32 H 0.258 0.742 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.165 0.835 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.232 0.768 41 H 0.087 0.913 42 H 0.194 0.806 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.365 -29.995 0.343 30.665 hybrid contribution 0.248 0.769 0.865 1.184 sum 6.612 -29.226 1.208 29.989 Atomic orbital electron populations 1.23423 0.75841 1.06078 1.02396 1.86123 1.23839 1.25431 1.88767 1.19011 0.91211 0.85814 1.00903 1.21244 1.01323 0.90260 1.02437 1.19721 0.94587 0.92007 1.05425 1.18392 0.87019 0.84168 0.75887 1.90795 1.15655 1.87861 1.51509 1.45576 1.11436 1.04455 1.74076 1.21120 0.94034 0.82376 1.02252 1.22091 0.94854 0.87063 1.03185 1.59886 1.19649 1.00608 1.51865 1.21524 0.93886 0.87252 1.03693 1.20977 0.88993 0.85634 0.82189 1.90504 1.16696 1.87375 1.56679 1.41914 1.09464 1.04551 1.65022 1.19663 0.92066 0.84802 1.50028 0.90467 1.25994 0.97246 1.01571 0.96254 1.69657 1.09322 1.26691 1.50256 0.84951 0.77834 0.77069 0.78624 1.19640 1.19514 1.19978 1.21440 0.90924 1.00224 0.97126 1.21318 1.02990 0.88520 0.99941 1.17614 0.85962 0.83744 1.07055 1.91504 1.76601 1.49474 1.93986 0.91730 0.85591 0.91737 0.83563 0.74197 0.92009 0.92185 0.92146 0.88549 0.83546 0.90816 0.87192 0.76825 0.91286 0.80579 0.79994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -5.75 10.36 -93.16 -0.96 -6.71 16 3 C 0.08 1.32 6.69 22.49 0.15 1.47 16 4 C -0.13 -2.27 8.58 22.62 0.19 -2.07 16 5 C -0.11 -1.74 5.87 -20.10 -0.12 -1.86 16 6 C 0.56 11.15 7.77 86.75 0.67 11.82 16 7 O -0.58 -16.87 16.34 -3.93 -0.06 -16.94 16 8 N -0.70 -10.15 5.51 -466.08 -2.57 -12.71 16 9 C 0.13 2.46 5.93 86.38 0.51 2.98 16 10 C 0.06 1.00 5.80 86.31 0.50 1.51 16 11 N -0.69 -19.50 6.13 -517.94 -3.17 -22.67 16 12 C 0.07 2.11 6.17 85.56 0.53 2.64 16 13 C 0.43 19.99 7.82 87.66 0.69 20.68 16 14 O -0.63 -34.33 15.78 -3.05 -0.05 -34.38 16 15 N -0.57 -28.57 5.29 -306.99 -1.62 -30.19 16 16 C -0.34 -18.88 9.68 84.04 0.81 -18.06 16 17 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 18 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 19 N -0.92 -48.54 13.05 21.66 0.28 -48.26 16 20 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 C -0.08 -0.64 9.53 22.53 0.21 -0.43 16 25 C -0.11 -0.96 10.00 22.26 0.22 -0.73 16 26 C 0.08 1.17 7.31 22.54 0.16 1.34 16 27 F -0.14 -2.47 17.10 44.97 0.77 -1.70 16 28 H 0.06 0.62 7.67 -2.39 -0.02 0.60 16 29 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.63 7.65 -2.38 -0.02 0.61 16 31 H 0.15 2.58 5.88 -2.91 -0.02 2.56 16 32 H 0.42 2.67 6.50 -92.71 -0.60 2.07 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.35 10.60 8.43 -89.69 -0.76 9.85 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.40 18.60 7.90 -92.70 -0.73 17.86 16 41 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 42 H 0.18 0.08 6.39 -2.91 -0.02 0.06 16 43 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 Total: -1.00 -78.27 377.83 -0.23 -78.50 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.99 Total: 30.09 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 6.12 Total: 20.47 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -7.08 Total: -113.84 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -1.08 Total: -58.02 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.77 Total: -1.70 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -78.27 -0.23 -78.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134181074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.386 kcal (2) G-P(sol) polarization free energy of solvation -78.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds