Wall clock time and date at job start Tue Mar 31 2020 22:27:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 N 1.46893 * 109.46834 * 2 1
4 4 C 1.46904 * 111.00000 * 160.59209 * 3 2 1
5 5 C 1.50698 * 109.47288 * 288.23246 * 4 3 2
6 6 O 1.21296 * 119.99770 * 358.84759 * 5 4 3
7 7 N 1.34771 * 120.00100 * 178.84818 * 5 4 3
8 8 C 1.37093 * 120.00229 * 180.02562 * 7 5 4
9 9 H 1.08008 * 119.99715 * 359.97438 * 8 7 5
10 10 C 1.38954 * 120.00483 * 179.97438 * 8 7 5
11 11 N 1.31410 * 119.99591 * 359.97438 * 10 8 7
12 12 Si 1.86795 * 120.00102 * 179.97438 * 10 8 7
13 13 H 1.48496 * 109.47530 * 0.02562 * 12 10 8
14 14 H 1.48508 * 109.46774 * 120.00174 * 12 10 8
15 15 H 1.48497 * 109.47118 * 239.99599 * 12 10 8
16 16 C 1.46904 * 111.00095 * 284.54657 * 3 2 1
17 17 H 1.08995 * 109.46957 * 49.06426 * 16 3 2
18 18 C 1.53003 * 109.46924 * 289.06219 * 16 3 2
19 19 C 1.53003 * 109.47160 * 169.06150 * 16 3 2
20 20 N 1.46499 * 109.46889 * 304.34965 * 19 16 3
21 21 C 1.34780 * 119.99651 * 184.76330 * 20 19 16
22 22 O 1.21639 * 120.00249 * 0.02562 * 21 20 19
23 23 C 1.47194 * 119.99759 * 180.02562 * 21 20 19
24 24 C 1.44422 * 123.45784 * 179.72906 * 23 21 20
25 25 C 1.32775 * 113.08193 * 179.80473 * 24 23 21
26 26 S 1.75500 * 110.57590 * 0.44075 * 25 24 23
27 27 C 1.36002 * 123.46219 * 0.02562 * 23 21 20
28 28 H 1.08996 * 109.47165 * 65.41702 * 1 2 3
29 29 H 1.09004 * 109.46514 * 185.41449 * 1 2 3
30 30 H 1.08994 * 109.47225 * 305.41480 * 1 2 3
31 31 H 1.08993 * 109.46741 * 239.99889 * 2 1 3
32 32 H 1.09000 * 109.46959 * 120.00112 * 2 1 3
33 33 H 1.08995 * 109.46647 * 48.23483 * 4 3 2
34 34 H 1.09003 * 109.47231 * 168.23187 * 4 3 2
35 35 H 0.97002 * 119.99922 * 359.97438 * 7 5 4
36 36 H 0.96995 * 119.99869 * 179.97438 * 11 10 8
37 37 H 1.08995 * 109.46689 * 179.97438 * 18 16 3
38 38 H 1.08999 * 109.46902 * 299.99429 * 18 16 3
39 39 H 1.09001 * 109.46997 * 60.00184 * 18 16 3
40 40 H 1.08994 * 109.47121 * 64.35237 * 19 16 3
41 41 H 1.08996 * 109.46917 * 184.35072 * 19 16 3
42 42 H 0.96993 * 120.00320 * 4.76626 * 20 19 16
43 43 H 1.08003 * 123.46278 * 0.02562 * 24 23 21
44 44 H 1.07997 * 124.71113 * 180.18480 * 25 24 23
45 45 H 1.07998 * 124.59395 * 0.02562 * 27 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 3.4147 1.4502 0.4557
5 6 3.4723 1.1806 1.9373
6 8 2.4496 0.9769 2.5568
7 7 4.6602 1.1659 2.5738
8 6 4.7127 0.9201 3.9215
9 1 3.8020 0.7387 4.4732
10 6 5.9374 0.9044 4.5778
11 7 7.0453 1.1247 3.9064
12 14 6.0087 0.5702 6.4142
13 1 4.6337 0.3547 6.9320
14 1 6.8275 -0.6431 6.6651
15 1 6.6220 1.7327 7.1054
16 6 1.8704 1.9961 -1.3275
17 1 0.8583 1.8253 -1.6944
18 6 2.8762 1.3679 -2.2942
19 6 2.1296 3.5008 -1.2283
20 7 1.2356 4.0852 -0.2257
21 6 1.2178 5.4193 -0.0346
22 8 1.9437 6.1380 -0.6949
23 6 0.3199 6.0065 0.9732
24 6 0.2443 7.4232 1.2433
25 6 -0.6367 7.7265 2.1892
26 16 -1.4080 6.2742 2.8022
27 6 -0.5194 5.2702 1.7497
28 1 -0.3633 0.4275 -0.9345
29 1 -0.3632 -1.0232 0.0970
30 1 -0.3633 0.5955 0.8375
31 1 1.8933 -0.5138 -0.8899
32 1 1.8934 -0.5139 0.8900
33 1 4.0049 0.7018 -0.0730
34 1 3.8179 2.4420 0.2510
35 1 5.4780 1.3285 2.0783
36 1 7.9002 1.1141 4.3646
37 1 2.7651 1.8211 -3.2792
38 1 3.8883 1.5389 -1.9273
39 1 2.6915 0.2960 -2.3649
40 1 3.1654 3.6725 -0.9357
41 1 1.9436 3.9660 -2.1963
42 1 0.6565 3.5122 0.3007
43 1 0.8404 8.1607 0.7263
44 1 -0.8463 8.7275 2.5362
45 1 -0.6101 4.1949 1.7059
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001151777633.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:27:26
Heat of formation + Delta-G solvation = -34.035811 kcal
Electronic energy + Delta-G solvation = -27665.035621 eV
Core-core repulsion = 23809.402802 eV
Total energy + Delta-G solvation = -3855.632818 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-39.96609 -39.00745 -37.39476 -36.69273 -34.45852 -33.81597 -31.89113 -31.24246
-30.15630 -29.74193 -26.63574 -26.40970 -24.64554 -24.21830 -22.54116 -21.25716
-20.21484 -19.14741 -18.74544 -18.12317 -17.76030 -16.95856 -16.68188 -15.89755
-15.39374 -14.99008 -14.81883 -14.57071 -14.39643 -14.06015 -13.94362 -13.63843
-13.31508 -13.12864 -13.04300 -12.91476 -12.68884 -12.50668 -12.41002 -12.17698
-12.00405 -11.82052 -11.54379 -11.34316 -11.25529 -11.19675 -11.08910 -10.70553
-10.43109 -10.34438 -10.21360 -9.82187 -9.47904 -9.15132 -8.92971 -8.49428
-8.45304 -7.96640 -7.90925 -6.40529 -3.81158 0.73133 1.46572 1.84092
1.99015 3.16488 3.26618 3.27729 3.33727 3.48551 3.89809 3.94748
4.22889 4.66673 4.71921 4.90684 5.06818 5.09445 5.18221 5.18770
5.26569 5.32888 5.34225 5.40472 5.49988 5.62495 5.65837 5.73202
5.76422 5.83547 5.84417 5.94813 6.00849 6.07850 6.12451 6.19638
6.26399 6.36679 6.46059 6.55951 7.22948 7.31549 7.56073 7.69069
8.07543 8.35566 8.63003 9.19561 9.56372 10.07868 10.77394
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.008016 B = 0.003748 C = 0.003007
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3492.193089 B = 7468.335804 C = 9310.677323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.053 3.947
3 N -0.508 5.508
4 C 0.041 3.959
5 C 0.445 3.555
6 O -0.577 6.577
7 N -0.566 5.566
8 C -0.297 4.297
9 H 0.103 0.897
10 C 0.022 3.978
11 N -0.902 5.902
12 Si 0.928 3.072
13 H -0.268 1.268
14 H -0.282 1.282
15 H -0.282 1.282
16 C 0.064 3.936
17 H 0.090 0.910
18 C -0.185 4.185
19 C 0.130 3.870
20 N -0.707 5.707
21 C 0.576 3.424
22 O -0.548 6.548
23 C -0.155 4.155
24 C -0.084 4.084
25 C -0.241 4.241
26 S 0.182 5.818
27 C -0.202 4.202
28 H 0.044 0.956
29 H 0.053 0.947
30 H 0.065 0.935
31 H 0.029 0.971
32 H 0.087 0.913
33 H 0.051 0.949
34 H 0.088 0.912
35 H 0.391 0.609
36 H 0.270 0.730
37 H 0.062 0.938
38 H 0.064 0.936
39 H 0.063 0.937
40 H 0.068 0.932
41 H 0.072 0.928
42 H 0.410 0.590
43 H 0.152 0.848
44 H 0.168 0.832
45 H 0.173 0.827
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.314 5.877 -9.926 18.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.075 4.075
3 N -0.232 5.232
4 C -0.090 4.090
5 C 0.230 3.770
6 O -0.461 6.461
7 N -0.203 5.203
8 C -0.426 4.426
9 H 0.121 0.879
10 C -0.180 4.180
11 N -0.543 5.543
12 Si 0.755 3.245
13 H -0.193 1.193
14 H -0.208 1.208
15 H -0.208 1.208
16 C -0.046 4.046
17 H 0.108 0.892
18 C -0.245 4.245
19 C 0.006 3.994
20 N -0.358 5.358
21 C 0.361 3.639
22 O -0.428 6.428
23 C -0.173 4.173
24 C -0.114 4.114
25 C -0.376 4.376
26 S 0.447 5.553
27 C -0.340 4.340
28 H 0.063 0.937
29 H 0.072 0.928
30 H 0.084 0.916
31 H 0.047 0.953
32 H 0.106 0.894
33 H 0.069 0.931
34 H 0.106 0.894
35 H 0.224 0.776
36 H 0.080 0.920
37 H 0.082 0.918
38 H 0.083 0.917
39 H 0.082 0.918
40 H 0.086 0.914
41 H 0.091 0.909
42 H 0.246 0.754
43 H 0.170 0.830
44 H 0.185 0.815
45 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -15.676 6.234 -8.467 18.875
hybrid contribution 2.188 -0.636 -0.774 2.406
sum -13.488 5.598 -9.241 17.281
Atomic orbital electron populations
1.21704 0.95341 1.01222 1.01491 1.22109 0.95853 0.88381 1.01144
1.61781 1.19714 1.19081 1.22613 1.21921 0.89312 1.01921 0.95871
1.19733 0.84569 0.84524 0.88149 1.90501 1.33707 1.54279 1.67588
1.41876 1.06843 1.62365 1.09184 1.19714 0.94483 1.44922 0.83522
0.87944 1.25246 0.94799 0.97495 1.00411 1.69618 0.98082 1.49821
1.36787 0.85829 0.78494 0.77855 0.82336 1.19264 1.20809 1.20765
1.22046 1.00150 0.93158 0.89212 0.89158 1.22404 1.00498 1.01552
1.00012 1.21413 0.94494 0.91675 0.91859 1.45656 1.43230 1.06532
1.40390 1.17585 0.81993 0.82117 0.82168 1.90766 1.42575 1.60815
1.48595 1.20316 1.01637 0.93717 1.01595 1.21129 0.98390 0.94290
0.97542 1.25490 1.04858 1.02726 1.04557 1.83055 1.39723 0.95538
1.37007 1.25762 1.01815 1.05274 1.01161 0.93738 0.92841 0.91559
0.95270 0.89423 0.93142 0.89422 0.77610 0.91964 0.91849 0.91656
0.91805 0.91398 0.90947 0.75360 0.83004 0.81464 0.80942
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.67 9.94 37.16 0.37 -1.30 16
2 C 0.05 0.74 5.12 -3.82 -0.02 0.72 16
3 N -0.51 -7.32 3.41 -228.08 -0.78 -8.10 16
4 C 0.04 0.69 4.15 -4.97 -0.02 0.67 16
5 C 0.45 10.11 7.29 -10.99 -0.08 10.03 16
6 O -0.58 -14.71 14.67 5.54 0.08 -14.63 16
7 N -0.57 -14.17 5.29 -10.96 -0.06 -14.23 16
8 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16
9 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16
10 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
11 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16
12 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16
13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16
14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
16 C 0.06 0.72 2.39 -67.71 -0.16 0.56 16
17 H 0.09 0.92 6.68 -51.93 -0.35 0.58 16
18 C -0.19 -1.86 8.50 37.16 0.32 -1.54 16
19 C 0.13 1.65 4.92 -4.04 -0.02 1.63 16
20 N -0.71 -9.67 5.39 -61.46 -0.33 -10.01 16
21 C 0.58 8.95 7.79 -12.62 -0.10 8.86 16
22 O -0.55 -10.11 16.79 5.24 0.09 -10.02 16
23 C -0.15 -2.11 5.98 -104.63 -0.63 -2.74 16
24 C -0.08 -1.03 10.10 -39.02 -0.39 -1.43 16
25 C -0.24 -2.40 11.12 28.86 0.32 -2.08 16
26 S 0.18 1.77 23.02 -107.50 -2.48 -0.71 16
27 C -0.20 -2.37 10.38 29.93 0.31 -2.06 16
28 H 0.04 0.45 6.94 -51.93 -0.36 0.09 16
29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
31 H 0.03 0.37 6.24 -51.93 -0.32 0.04 16
32 H 0.09 1.55 6.43 -51.93 -0.33 1.22 16
33 H 0.05 0.79 7.13 -51.93 -0.37 0.42 16
34 H 0.09 1.45 6.07 -51.93 -0.32 1.13 16
35 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16
36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16
37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
38 H 0.06 0.70 6.68 -51.93 -0.35 0.36 16
39 H 0.06 0.63 6.50 -51.93 -0.34 0.29 16
40 H 0.07 0.97 6.50 -51.93 -0.34 0.63 16
41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
42 H 0.41 5.35 6.59 -40.82 -0.27 5.08 16
43 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16
44 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16
45 H 0.17 1.85 7.01 -52.49 -0.37 1.48 16
LS Contribution 380.16 15.07 5.73 5.73
Total: -1.00 -32.33 380.16 -8.47 -40.79
By element:
Atomic # 1 Polarization: 21.64 SS G_CDS: -6.08 Total: 15.57 kcal
Atomic # 6 Polarization: 3.80 SS G_CDS: -0.34 Total: 3.46 kcal
Atomic # 7 Polarization: -55.80 SS G_CDS: -0.44 Total: -56.25 kcal
Atomic # 8 Polarization: -24.82 SS G_CDS: 0.17 Total: -24.65 kcal
Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal
Atomic # 16 Polarization: 1.77 SS G_CDS: -2.48 Total: -0.71 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -32.33 -8.47 -40.79 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001151777633.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.758 kcal
(2) G-P(sol) polarization free energy of solvation -32.328 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.570 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.036 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds