Wall clock time and date at job start Tue Mar 31 2020 22:27:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 N 1.46893 * 109.46834 * 2 1
4 4 C 1.46904 * 111.00000 * 160.59209 * 3 2 1
5 5 C 1.50698 * 109.47288 * 288.23246 * 4 3 2
6 6 O 1.21296 * 119.99770 * 358.84759 * 5 4 3
7 7 N 1.34771 * 120.00100 * 178.84818 * 5 4 3
8 8 C 1.37093 * 120.00229 * 180.02562 * 7 5 4
9 9 H 1.08008 * 119.99715 * 359.97438 * 8 7 5
10 10 C 1.38954 * 120.00483 * 179.97438 * 8 7 5
11 11 N 1.31410 * 119.99591 * 359.97438 * 10 8 7
12 12 Si 1.86795 * 120.00102 * 179.97438 * 10 8 7
13 13 H 1.48496 * 109.47530 * 0.02562 * 12 10 8
14 14 H 1.48508 * 109.46774 * 120.00174 * 12 10 8
15 15 H 1.48497 * 109.47118 * 239.99599 * 12 10 8
16 16 C 1.46904 * 111.00095 * 284.54657 * 3 2 1
17 17 H 1.08995 * 109.46957 * 49.06426 * 16 3 2
18 18 C 1.53003 * 109.46924 * 289.06219 * 16 3 2
19 19 C 1.53003 * 109.47160 * 169.06150 * 16 3 2
20 20 N 1.46499 * 109.46889 * 304.34965 * 19 16 3
21 21 C 1.34780 * 119.99651 * 184.76330 * 20 19 16
22 22 O 1.21639 * 120.00249 * 0.02562 * 21 20 19
23 23 C 1.47194 * 119.99759 * 180.02562 * 21 20 19
24 24 C 1.44422 * 123.45784 * 179.72906 * 23 21 20
25 25 C 1.32775 * 113.08193 * 179.80473 * 24 23 21
26 26 S 1.75500 * 110.57590 * 0.44075 * 25 24 23
27 27 C 1.36002 * 123.46219 * 0.02562 * 23 21 20
28 28 H 1.08996 * 109.47165 * 65.41702 * 1 2 3
29 29 H 1.09004 * 109.46514 * 185.41449 * 1 2 3
30 30 H 1.08994 * 109.47225 * 305.41480 * 1 2 3
31 31 H 1.08993 * 109.46741 * 239.99889 * 2 1 3
32 32 H 1.09000 * 109.46959 * 120.00112 * 2 1 3
33 33 H 1.08995 * 109.46647 * 48.23483 * 4 3 2
34 34 H 1.09003 * 109.47231 * 168.23187 * 4 3 2
35 35 H 0.97002 * 119.99922 * 359.97438 * 7 5 4
36 36 H 0.96995 * 119.99869 * 179.97438 * 11 10 8
37 37 H 1.08995 * 109.46689 * 179.97438 * 18 16 3
38 38 H 1.08999 * 109.46902 * 299.99429 * 18 16 3
39 39 H 1.09001 * 109.46997 * 60.00184 * 18 16 3
40 40 H 1.08994 * 109.47121 * 64.35237 * 19 16 3
41 41 H 1.08996 * 109.46917 * 184.35072 * 19 16 3
42 42 H 0.96993 * 120.00320 * 4.76626 * 20 19 16
43 43 H 1.08003 * 123.46278 * 0.02562 * 24 23 21
44 44 H 1.07997 * 124.71113 * 180.18480 * 25 24 23
45 45 H 1.07998 * 124.59395 * 0.02562 * 27 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 3.4147 1.4502 0.4557
5 6 3.4723 1.1806 1.9373
6 8 2.4496 0.9769 2.5568
7 7 4.6602 1.1659 2.5738
8 6 4.7127 0.9201 3.9215
9 1 3.8020 0.7387 4.4732
10 6 5.9374 0.9044 4.5778
11 7 7.0453 1.1247 3.9064
12 14 6.0087 0.5702 6.4142
13 1 4.6337 0.3547 6.9320
14 1 6.8275 -0.6431 6.6651
15 1 6.6220 1.7327 7.1054
16 6 1.8704 1.9961 -1.3275
17 1 0.8583 1.8253 -1.6944
18 6 2.8762 1.3679 -2.2942
19 6 2.1296 3.5008 -1.2283
20 7 1.2356 4.0852 -0.2257
21 6 1.2178 5.4193 -0.0346
22 8 1.9437 6.1380 -0.6949
23 6 0.3199 6.0065 0.9732
24 6 0.2443 7.4232 1.2433
25 6 -0.6367 7.7265 2.1892
26 16 -1.4080 6.2742 2.8022
27 6 -0.5194 5.2702 1.7497
28 1 -0.3633 0.4275 -0.9345
29 1 -0.3632 -1.0232 0.0970
30 1 -0.3633 0.5955 0.8375
31 1 1.8933 -0.5138 -0.8899
32 1 1.8934 -0.5139 0.8900
33 1 4.0049 0.7018 -0.0730
34 1 3.8179 2.4420 0.2510
35 1 5.4780 1.3285 2.0783
36 1 7.9002 1.1141 4.3646
37 1 2.7651 1.8211 -3.2792
38 1 3.8883 1.5389 -1.9273
39 1 2.6915 0.2960 -2.3649
40 1 3.1654 3.6725 -0.9357
41 1 1.9436 3.9660 -2.1963
42 1 0.6565 3.5122 0.3007
43 1 0.8404 8.1607 0.7263
44 1 -0.8463 8.7275 2.5362
45 1 -0.6101 4.1949 1.7059
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001151777633.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:27:26
Heat of formation + Delta-G solvation = -57.142550 kcal
Electronic energy + Delta-G solvation = -27666.037604 eV
Core-core repulsion = 23809.402802 eV
Total energy + Delta-G solvation = -3856.634802 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.13580 -40.41363 -38.91732 -37.70572 -35.96343 -35.47978 -33.27704 -32.86581
-31.37858 -30.70612 -27.95368 -27.57717 -26.03538 -25.54973 -23.58761 -22.26086
-21.67607 -20.47621 -20.04764 -19.64566 -18.98877 -18.16642 -17.95690 -17.03564
-16.84937 -16.45401 -16.18307 -15.96584 -15.78564 -15.55105 -15.25061 -14.99202
-14.40598 -14.15558 -14.10189 -13.95238 -13.84268 -13.64830 -13.51561 -13.46253
-13.36563 -13.03172 -12.91413 -12.84204 -12.40583 -12.37007 -12.32539 -12.11776
-12.07614 -11.87238 -11.53168 -11.37493 -10.99620 -10.26274 -10.14162 -9.97355
-9.95037 -9.33839 -9.17289 -8.44935 -5.92973 -0.19841 0.63427 0.97441
1.02267 1.36118 1.40770 1.54710 2.09646 2.19921 2.29446 2.38122
2.76252 3.22360 3.40522 3.74064 3.85890 3.96454 4.07615 4.17053
4.25395 4.31094 4.33173 4.42848 4.46095 4.53252 4.57467 4.62762
4.70454 4.78557 4.84227 4.84544 4.87569 5.14444 5.14901 5.22723
5.26951 5.28660 5.42175 5.45655 5.47428 5.91935 6.11395 6.23297
6.56919 6.62643 7.15565 7.21154 7.59998 8.15405 8.73020
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.008016 B = 0.003748 C = 0.003007
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3492.193089 B = 7468.335804 C = 9310.677323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.054 3.946
3 N -0.518 5.518
4 C 0.057 3.943
5 C 0.445 3.555
6 O -0.606 6.606
7 N -0.580 5.580
8 C -0.326 4.326
9 H 0.080 0.920
10 C -0.015 4.015
11 N -0.924 5.924
12 Si 0.990 3.010
13 H -0.271 1.271
14 H -0.271 1.271
15 H -0.274 1.274
16 C 0.073 3.927
17 H 0.112 0.888
18 C -0.182 4.182
19 C 0.128 3.872
20 N -0.701 5.701
21 C 0.569 3.431
22 O -0.587 6.587
23 C -0.183 4.183
24 C -0.111 4.111
25 C -0.231 4.231
26 S 0.234 5.766
27 C -0.211 4.211
28 H 0.069 0.931
29 H 0.063 0.937
30 H 0.047 0.953
31 H 0.051 0.949
32 H 0.046 0.954
33 H 0.068 0.932
34 H 0.093 0.907
35 H 0.392 0.608
36 H 0.276 0.724
37 H 0.083 0.917
38 H 0.055 0.945
39 H 0.070 0.930
40 H 0.050 0.950
41 H 0.084 0.916
42 H 0.413 0.587
43 H 0.147 0.853
44 H 0.198 0.802
45 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.644 5.801 -10.264 19.589
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.073 4.073
3 N -0.242 5.242
4 C -0.074 4.074
5 C 0.232 3.768
6 O -0.491 6.491
7 N -0.218 5.218
8 C -0.456 4.456
9 H 0.098 0.902
10 C -0.215 4.215
11 N -0.565 5.565
12 Si 0.814 3.186
13 H -0.196 1.196
14 H -0.197 1.197
15 H -0.199 1.199
16 C -0.035 4.035
17 H 0.130 0.870
18 C -0.241 4.241
19 C 0.004 3.996
20 N -0.351 5.351
21 C 0.356 3.644
22 O -0.470 6.470
23 C -0.201 4.201
24 C -0.140 4.140
25 C -0.366 4.366
26 S 0.499 5.501
27 C -0.350 4.350
28 H 0.088 0.912
29 H 0.082 0.918
30 H 0.066 0.934
31 H 0.069 0.931
32 H 0.064 0.936
33 H 0.086 0.914
34 H 0.111 0.889
35 H 0.225 0.775
36 H 0.085 0.915
37 H 0.102 0.898
38 H 0.074 0.926
39 H 0.089 0.911
40 H 0.068 0.932
41 H 0.102 0.898
42 H 0.250 0.750
43 H 0.165 0.835
44 H 0.215 0.785
45 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges -17.020 6.137 -8.823 20.130
hybrid contribution 2.486 -0.608 -0.668 2.645
sum -14.534 5.529 -9.491 18.218
Atomic orbital electron populations
1.21649 0.93535 1.01823 1.02045 1.22071 0.97294 0.87864 1.00116
1.61724 1.17864 1.19715 1.24934 1.21695 0.91551 1.02563 0.91628
1.20748 0.83355 0.82250 0.90436 1.90472 1.34579 1.54933 1.69107
1.41971 1.07682 1.63460 1.08674 1.19667 0.94177 1.46787 0.84935
0.90204 1.26012 0.94138 0.96833 1.04478 1.69687 0.98477 1.50057
1.38328 0.84904 0.78287 0.78157 0.77211 1.19593 1.19663 1.19927
1.22079 1.01864 0.91772 0.87829 0.86985 1.22376 0.99281 1.01929
1.00510 1.21504 0.93354 0.92711 0.92033 1.45683 1.42994 1.06132
1.40319 1.17976 0.81837 0.82421 0.82170 1.90727 1.44350 1.61662
1.50269 1.20344 1.02701 0.94692 1.02411 1.21183 0.99925 0.93792
0.99097 1.25876 1.03276 1.04382 1.03033 1.82893 1.37881 0.94268
1.35020 1.25962 1.01700 1.06025 1.01309 0.91191 0.91818 0.93367
0.93071 0.93567 0.91434 0.88900 0.77453 0.91503 0.89775 0.92599
0.91115 0.93198 0.89803 0.74995 0.83505 0.78499 0.80404
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.94 9.94 71.99 0.72 -2.22 16
2 C 0.05 1.46 5.12 86.31 0.44 1.90 16
3 N -0.52 -14.43 3.41 -875.51 -2.99 -17.42 16
4 C 0.06 1.92 4.15 85.56 0.36 2.27 16
5 C 0.44 20.72 7.29 87.66 0.64 21.36 16
6 O -0.61 -31.81 14.67 -3.08 -0.05 -31.86 16
7 N -0.58 -29.93 5.29 -306.98 -1.62 -31.55 16
8 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16
9 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16
10 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16
11 N -0.92 -50.78 13.05 21.66 0.28 -50.49 16
12 Si 0.99 43.39 29.55 68.60 2.03 45.42 16
13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16
14 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16
15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
16 C 0.07 1.50 2.39 44.92 0.11 1.61 16
17 H 0.11 1.91 6.68 -2.39 -0.02 1.89 16
18 C -0.18 -3.16 8.50 71.98 0.61 -2.55 16
19 C 0.13 3.14 4.92 86.38 0.43 3.57 16
20 N -0.70 -19.14 5.39 -466.59 -2.51 -21.66 16
21 C 0.57 18.13 7.79 86.60 0.67 18.80 16
22 O -0.59 -22.44 16.79 -4.15 -0.07 -22.51 16
23 C -0.18 -5.05 5.98 -19.87 -0.12 -5.17 16
24 C -0.11 -2.72 10.10 22.67 0.23 -2.49 16
25 C -0.23 -4.20 11.12 66.64 0.74 -3.46 16
26 S 0.23 4.09 23.02 -56.49 -1.30 2.79 16
27 C -0.21 -4.84 10.38 67.30 0.70 -4.14 16
28 H 0.07 1.19 6.94 -2.39 -0.02 1.17 16
29 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16
30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
31 H 0.05 1.15 6.24 -2.39 -0.01 1.14 16
32 H 0.05 1.65 6.43 -2.39 -0.02 1.63 16
33 H 0.07 2.07 7.13 -2.39 -0.02 2.05 16
34 H 0.09 3.08 6.07 -2.39 -0.01 3.06 16
35 H 0.39 19.64 7.90 -92.71 -0.73 18.90 16
36 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16
37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
38 H 0.05 1.09 6.68 -2.39 -0.02 1.08 16
39 H 0.07 1.16 6.50 -2.39 -0.02 1.15 16
40 H 0.05 1.42 6.50 -2.39 -0.02 1.40 16
41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16
42 H 0.41 10.64 6.59 -92.71 -0.61 10.03 16
43 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16
44 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16
45 H 0.18 3.72 7.01 -2.91 -0.02 3.70 16
Total: -1.00 -72.17 380.16 0.27 -71.89
By element:
Atomic # 1 Polarization: 44.28 SS G_CDS: -0.30 Total: 43.98 kcal
Atomic # 6 Polarization: 4.60 SS G_CDS: 6.80 Total: 11.40 kcal
Atomic # 7 Polarization: -114.28 SS G_CDS: -6.84 Total: -121.12 kcal
Atomic # 8 Polarization: -54.25 SS G_CDS: -0.11 Total: -54.36 kcal
Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal
Atomic # 16 Polarization: 4.09 SS G_CDS: -1.30 Total: 2.79 kcal
Total: -72.17 0.27 -71.89 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001151777633.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.752 kcal
(2) G-P(sol) polarization free energy of solvation -72.167 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.414 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.895 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.143 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds