Wall clock time and date at job start Tue Mar 31 2020 23:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38915 * 119.68314 * 179.72716 * 3 2 1 5 5 C 1.38384 * 119.11112 * 179.75573 * 4 3 2 6 6 C 1.38826 * 118.48284 * 0.51069 * 5 4 3 7 7 C 1.38048 * 119.28948 * 359.72773 * 6 5 4 8 8 C 1.50704 * 119.58253 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46705 * 95.02470 * 8 7 6 10 10 C 1.46893 * 110.99909 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47245 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47253 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.47162 * 179.97438 * 12 11 10 14 14 C 1.34769 * 120.00296 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99758 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00478 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.47348 * 180.02562 * 16 14 13 18 18 C 1.76209 * 99.99914 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99912 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99566 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00381 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99499 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47046 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46520 * 120.00250 * 22 20 18 25 25 H 1.48498 * 109.46871 * 239.99928 * 22 20 18 26 26 N 1.31963 * 120.83448 * 0.02569 * 7 6 5 27 27 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 29 29 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 30 30 H 1.08003 * 120.45041 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.75530 * 180.24165 * 5 4 3 32 32 H 1.08003 * 120.35720 * 179.75404 * 6 5 4 33 33 H 1.08998 * 109.47460 * 215.02436 * 8 7 6 34 34 H 1.08997 * 109.47373 * 335.03060 * 8 7 6 35 35 H 1.00896 * 111.00145 * 303.95508 * 9 8 7 36 36 H 1.09003 * 109.47101 * 300.00434 * 10 9 8 37 37 H 1.09000 * 109.47102 * 60.00034 * 10 9 8 38 38 H 1.09003 * 109.47150 * 300.00067 * 11 10 9 39 39 H 1.09000 * 109.47318 * 59.99829 * 11 10 9 40 40 H 1.08997 * 109.46978 * 299.99497 * 12 11 10 41 41 H 1.08996 * 109.47428 * 60.00054 * 12 11 10 42 42 H 0.97008 * 119.99730 * 359.97438 * 13 12 11 43 43 H 1.09003 * 109.47368 * 300.00418 * 16 14 13 44 44 H 1.09000 * 109.47010 * 60.00125 * 16 14 13 45 45 H 0.97003 * 119.99735 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0057 5 6 4.0487 2.5130 0.0005 6 6 3.2507 3.6490 0.0006 7 6 1.8773 3.5096 0.0000 8 6 1.0048 4.7384 0.0007 9 7 0.6228 5.0683 -1.3790 10 6 -0.2297 6.2639 -1.4175 11 6 -0.6065 6.5751 -2.8673 12 6 -1.4939 7.8208 -2.9076 13 7 -1.8543 8.1190 -4.2959 14 6 -2.6370 9.1798 -4.5760 15 8 -3.0426 9.8879 -3.6787 16 6 -3.0072 9.4870 -6.0041 17 16 -4.0571 10.9606 -6.0517 18 6 -4.3315 11.0848 -7.7878 19 1 -3.8901 10.3615 -8.4574 20 6 -5.1151 12.1123 -8.2948 21 7 -5.6527 12.9941 -7.4787 22 14 -5.4054 12.2444 -10.1354 23 1 -4.6959 11.1396 -10.8289 24 1 -6.8608 12.1500 -10.4149 25 1 -4.8908 13.5484 -10.6253 26 7 1.3188 2.3140 0.0000 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 4.0230 0.3694 0.0098 31 1 5.1256 2.5944 0.0009 32 1 3.6996 4.6313 0.0006 33 1 0.1080 4.5470 0.5900 34 1 1.5538 5.5737 0.4352 35 1 1.4381 5.1870 -1.9613 36 1 -1.1349 6.0836 -0.8378 37 1 0.3112 7.1096 -0.9929 38 1 0.2986 6.7553 -3.4474 39 1 -1.1476 5.7293 -3.2916 40 1 -2.3991 7.6410 -2.3275 41 1 -0.9526 8.6664 -2.4835 42 1 -1.5296 7.5529 -5.0136 43 1 -2.1017 9.6675 -6.5835 44 1 -3.5479 8.6413 -6.4292 45 1 -6.1999 13.7123 -7.8331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154802974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:59 Heat of formation + Delta-G solvation = -73.151072 kcal Electronic energy + Delta-G solvation = -24575.948296 eV Core-core repulsion = 20718.619313 eV Total energy + Delta-G solvation = -3857.328983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61726 -40.60165 -39.12932 -37.75795 -36.00126 -34.58288 -33.72644 -32.93795 -31.65238 -30.30835 -28.44733 -27.68911 -26.93634 -24.76533 -23.91779 -22.90769 -22.47357 -21.65640 -19.81762 -19.13513 -18.05323 -17.71099 -17.32784 -17.07146 -16.98334 -16.90814 -16.87725 -16.43889 -15.97590 -15.66729 -15.52154 -15.33177 -14.87637 -14.67999 -14.45506 -14.23743 -14.13590 -13.75999 -13.42813 -13.15748 -13.15557 -12.94279 -12.90634 -12.80387 -12.60233 -12.48733 -12.43297 -12.10187 -11.84207 -11.70342 -11.15583 -10.96861 -10.84848 -10.56922 -10.27012 -10.10743 -9.54299 -9.34670 -8.66541 -8.34571 -6.12703 0.10823 0.34467 1.27731 1.41894 1.47807 1.59024 1.61907 2.16304 2.25696 2.29696 2.68521 2.99769 3.10166 3.31906 3.37364 3.83706 3.94966 4.01438 4.09232 4.15680 4.18734 4.23719 4.30996 4.33406 4.40741 4.42563 4.50304 4.51940 4.52756 4.59376 4.70672 4.76122 4.79565 4.84982 5.03106 5.17549 5.20111 5.24235 5.42508 5.46630 5.51536 5.93957 6.20402 6.23985 6.39720 6.52405 6.92038 7.06945 7.25605 8.74969 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025875 B = 0.001310 C = 0.001292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.881395 B =21366.147278 C =21671.403536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.324 6.324 3 C 0.293 3.707 4 C -0.200 4.200 5 C -0.036 4.036 6 C -0.202 4.202 7 C 0.154 3.846 8 C 0.111 3.889 9 N -0.689 5.689 10 C 0.068 3.932 11 C -0.112 4.112 12 C 0.122 3.878 13 N -0.713 5.713 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.130 4.130 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.274 1.274 26 N -0.547 5.547 27 H 0.120 0.880 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.155 0.845 31 H 0.176 0.824 32 H 0.162 0.838 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.348 0.652 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.417 0.583 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.643 -26.103 15.250 37.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.231 6.231 3 C 0.114 3.886 4 C -0.220 4.220 5 C -0.061 4.061 6 C -0.222 4.222 7 C 0.017 3.983 8 C -0.018 4.018 9 N -0.321 5.321 10 C -0.062 4.062 11 C -0.150 4.150 12 C -0.002 4.002 13 N -0.367 5.367 14 C 0.317 3.683 15 O -0.446 6.446 16 C -0.281 4.281 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.199 1.199 26 N -0.271 5.271 27 H 0.138 0.862 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.173 0.827 31 H 0.193 0.807 32 H 0.179 0.821 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.167 0.833 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.254 0.746 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.534 -25.596 16.779 36.855 hybrid contribution 1.150 0.101 -1.922 2.242 sum 21.684 -25.495 14.857 36.619 Atomic orbital electron populations 1.22950 0.76219 1.04294 1.01904 1.86211 1.24012 1.24891 1.88036 1.20218 0.90363 0.84695 0.93282 1.21419 0.91443 1.01174 1.07985 1.21827 1.02249 0.90229 0.91778 1.22165 0.93369 1.01536 1.05169 1.21003 0.92503 0.91259 0.93517 1.20792 0.98079 0.92036 0.90887 1.60303 1.23939 1.38277 1.09584 1.21777 0.97558 0.90600 0.96227 1.21584 0.99942 0.95909 0.97599 1.21313 0.98913 0.98019 0.81964 1.45747 1.51497 1.29131 1.10307 1.20078 0.77800 0.80469 0.89904 1.90690 1.54704 1.50308 1.48936 1.23376 1.04575 1.03365 0.96782 1.85581 1.63421 1.32403 1.11231 1.23250 1.37288 1.16886 0.91991 0.89872 1.26129 0.94246 0.94069 1.04678 1.70192 1.32192 1.15043 1.37379 0.84896 0.78237 0.78653 0.76090 1.18024 1.19963 1.19893 1.67036 1.41921 0.99026 1.19119 0.86227 0.92836 0.93058 0.82710 0.80701 0.82079 0.90308 0.90971 0.83319 0.91012 0.93597 0.89775 0.90301 0.92607 0.92180 0.74617 0.87098 0.87236 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 113.37 1.18 1.75 16 2 O -0.32 -5.91 10.48 -89.92 -0.94 -6.85 16 3 C 0.29 5.35 7.49 84.79 0.63 5.99 16 4 C -0.20 -2.53 10.04 22.47 0.23 -2.30 16 5 C -0.04 -0.30 10.17 22.45 0.23 -0.07 16 6 C -0.20 -1.91 9.71 22.37 0.22 -1.69 16 7 C 0.15 2.24 6.29 42.49 0.27 2.50 16 8 C 0.11 1.35 5.99 85.56 0.51 1.86 16 9 N -0.69 -8.68 6.49 -517.94 -3.36 -12.04 16 10 C 0.07 0.84 5.68 86.30 0.49 1.33 16 11 C -0.11 -1.48 5.59 30.59 0.17 -1.31 16 12 C 0.12 2.54 5.68 86.38 0.49 3.03 16 13 N -0.71 -17.47 5.56 -463.07 -2.57 -20.04 16 14 C 0.53 19.59 7.85 87.66 0.69 20.28 16 15 O -0.57 -26.49 15.86 -3.05 -0.05 -26.54 16 16 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 17 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 18 C -0.55 -31.29 9.50 67.95 0.65 -30.64 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.77 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 22 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 N -0.55 -10.51 9.13 -297.00 -2.71 -13.22 16 27 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 29 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 30 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 32 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 0.56 8.04 -2.39 -0.02 0.55 16 35 H 0.35 3.57 8.72 -89.70 -0.78 2.78 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.42 7.27 8.47 -92.70 -0.79 6.48 16 43 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 44 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -82.04 401.35 -2.39 -84.43 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -0.56 Total: 16.94 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 6.65 Total: -2.73 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -8.36 Total: -101.17 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.99 Total: -33.39 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -82.04 -2.39 -84.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.282 kcal (2) G-P(sol) polarization free energy of solvation -82.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds