Wall clock time and date at job start Tue Mar 31 2020 22:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46496 * 109.47107 * 2 1 4 4 C 1.36940 * 120.00387 * 275.73430 * 3 2 1 5 5 H 1.08009 * 119.99685 * 33.27031 * 4 3 2 6 6 C 1.38814 * 120.00518 * 213.27491 * 4 3 2 7 7 N 1.31614 * 119.99814 * 17.25978 * 6 4 3 8 8 Si 1.86802 * 119.99935 * 197.26366 * 6 4 3 9 9 H 1.48499 * 109.47114 * 59.99969 * 8 6 4 10 10 H 1.48500 * 109.46719 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47104 * 299.99683 * 8 6 4 12 12 C 1.46502 * 120.00266 * 95.73267 * 3 2 1 13 13 H 1.09003 * 109.47324 * 180.08151 * 12 3 2 14 14 C 1.53002 * 109.47059 * 60.08138 * 12 3 2 15 15 C 1.53003 * 109.46947 * 300.08174 * 12 3 2 16 16 N 1.46494 * 109.47199 * 304.99774 * 15 12 3 17 17 C 1.34775 * 120.00220 * 179.97438 * 16 15 12 18 18 O 1.21280 * 119.99952 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00540 * 179.97438 * 17 16 15 20 20 N 1.46498 * 109.47488 * 179.97438 * 19 17 16 21 21 C 1.34781 * 119.99923 * 180.02562 * 20 19 17 22 22 O 1.21700 * 120.00035 * 359.97438 * 21 20 19 23 23 C 1.46578 * 119.99664 * 180.02562 * 21 20 19 24 24 C 1.36651 * 125.45784 * 180.02562 * 23 21 20 25 25 C 1.37475 * 113.29753 * 179.97438 * 24 23 21 26 26 C 1.33811 * 115.10129 * 359.97438 * 25 24 23 27 27 S 1.70619 * 110.95757 * 359.75974 * 26 25 24 28 28 H 1.09001 * 109.47508 * 60.00361 * 1 2 3 29 29 H 1.09004 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47451 * 299.99462 * 1 2 3 31 31 H 1.09003 * 109.47083 * 240.00318 * 2 1 3 32 32 H 1.08999 * 109.47289 * 120.00132 * 2 1 3 33 33 H 0.97001 * 120.00324 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47099 * 180.02562 * 14 12 3 35 35 H 1.09003 * 109.47063 * 300.00172 * 14 12 3 36 36 H 1.08999 * 109.47048 * 59.99961 * 14 12 3 37 37 H 1.09005 * 109.46973 * 184.99488 * 15 12 3 38 38 H 1.09000 * 109.47234 * 64.99946 * 15 12 3 39 39 H 0.97001 * 120.00320 * 0.02562 * 16 15 12 40 40 H 1.09000 * 109.47156 * 300.00598 * 19 17 16 41 41 H 1.09005 * 109.46560 * 60.00118 * 19 17 16 42 42 H 0.96994 * 119.99771 * 0.02562 * 20 19 17 43 43 H 1.08001 * 123.34926 * 359.92789 * 24 23 21 44 44 H 1.08002 * 122.44433 * 180.02562 * 25 24 23 45 45 H 1.07999 * 124.52207 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1348 2.0663 -1.1800 5 1 1.4368 1.8811 -1.9831 6 6 3.1500 2.9987 -1.3439 7 7 4.1870 2.9918 -0.5334 8 14 3.0444 4.2631 -2.7149 9 1 1.8242 5.0896 -2.5330 10 1 4.2442 5.1372 -2.6755 11 1 2.9806 3.5680 -4.0255 12 6 2.3819 2.0296 1.2624 13 1 2.7190 3.0471 1.0643 14 6 3.5076 1.2412 1.9349 15 6 1.1629 2.0669 2.1862 16 7 0.0466 2.7175 1.4957 17 6 -1.1390 2.8633 2.1199 18 8 -1.2816 2.4562 3.2534 19 6 -2.2871 3.5331 1.4099 20 7 -3.4548 3.5676 2.2940 21 6 -4.6063 4.1235 1.8681 22 8 -4.6760 4.5973 0.7492 23 6 -5.7744 4.1586 2.7529 24 6 -6.9923 4.6918 2.4373 25 6 -7.9109 4.5896 3.4549 26 6 -7.4632 3.9933 4.5660 27 16 -5.8355 3.5136 4.3876 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.8963 3.6435 -0.6477 34 1 3.7779 1.7234 2.8743 35 1 3.1705 0.2237 2.1329 36 1 4.3760 1.2146 1.2767 37 1 1.4079 2.6270 3.0887 38 1 0.8799 1.0494 2.4557 39 1 0.1605 3.0428 0.5890 40 1 -2.0041 4.5508 1.1412 41 1 -2.5319 2.9736 0.5070 42 1 -3.3991 3.1904 3.1859 43 1 -7.2112 5.1488 1.4835 44 1 -8.9203 4.9626 3.3639 45 1 -8.0545 3.8329 5.4553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156733439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:43 Heat of formation + Delta-G solvation = -35.844292 kcal Electronic energy + Delta-G solvation = -27229.479560 eV Core-core repulsion = 23373.768321 eV Total energy + Delta-G solvation = -3855.711240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33189 -40.39707 -38.67866 -38.35718 -35.72157 -35.24559 -33.71545 -32.78597 -31.32176 -29.95840 -29.19116 -26.69154 -25.77338 -25.42518 -23.34022 -22.45013 -21.56221 -21.01996 -20.40584 -19.80003 -18.74403 -17.82801 -17.59202 -17.08945 -16.87881 -16.62557 -16.47846 -16.27263 -15.75122 -15.67451 -15.19500 -14.72068 -14.37240 -14.27669 -14.20477 -13.93834 -13.80353 -13.69074 -13.50593 -13.42725 -13.23300 -13.10870 -12.77210 -12.72069 -12.50748 -12.38837 -12.08689 -11.92745 -11.85404 -11.38719 -11.33980 -11.15400 -11.04527 -10.48409 -10.41296 -9.97008 -9.86253 -9.55941 -8.51298 -7.81266 -5.30859 -0.51975 0.47307 0.93652 1.38221 1.51537 1.51812 1.55703 1.59189 1.70366 2.09088 2.44871 2.56015 3.33478 3.58739 3.68098 3.79856 4.13998 4.23121 4.26518 4.31889 4.34847 4.47733 4.54801 4.59146 4.70268 4.83170 4.89659 4.95166 4.97875 5.01511 5.05396 5.08556 5.20892 5.24709 5.34610 5.36130 5.46614 5.60120 5.72144 5.77744 5.90036 6.25034 6.50534 6.58142 6.93026 7.14274 7.26630 7.94650 8.46146 9.22375 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016772 B = 0.002586 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.009384 B =10826.851960 C =11697.090569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.261 4.261 5 H 0.061 0.939 6 C -0.030 4.030 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.301 1.301 11 H -0.285 1.285 12 C 0.180 3.820 13 H 0.071 0.929 14 C -0.135 4.135 15 C 0.116 3.884 16 N -0.692 5.692 17 C 0.509 3.491 18 O -0.577 6.577 19 C 0.104 3.896 20 N -0.709 5.709 21 C 0.591 3.409 22 O -0.568 6.568 23 C -0.305 4.305 24 C -0.053 4.053 25 C -0.159 4.159 26 C -0.215 4.215 27 S 0.222 5.778 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.248 0.752 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.413 0.587 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.412 0.588 43 H 0.151 0.849 44 H 0.173 0.827 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.273 0.770 11.329 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.391 4.391 5 H 0.078 0.922 6 C -0.228 4.228 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.228 1.228 11 H -0.211 1.211 12 C 0.073 3.927 13 H 0.089 0.911 14 C -0.195 4.195 15 C -0.010 4.010 16 N -0.342 5.342 17 C 0.295 3.705 18 O -0.458 6.458 19 C -0.023 4.023 20 N -0.363 5.363 21 C 0.379 3.621 22 O -0.449 6.449 23 C -0.425 4.425 24 C -0.088 4.088 25 C -0.189 4.189 26 C -0.352 4.352 27 S 0.489 5.511 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.250 0.750 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.250 0.750 43 H 0.169 0.831 44 H 0.190 0.810 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -19.155 0.139 12.285 22.757 hybrid contribution -0.369 1.365 -1.920 2.384 sum -19.524 1.505 10.366 22.157 Atomic orbital electron populations 1.22270 0.98051 1.00306 1.00952 1.20832 0.93055 0.86207 0.98600 1.44005 1.76134 1.09144 1.01998 1.19200 1.07909 1.17971 0.94039 0.92159 1.25671 0.94538 1.02942 0.99599 1.70119 1.08310 1.36390 1.40988 0.85640 0.76568 0.79748 0.80136 1.20182 1.22803 1.21105 1.20373 0.90008 0.98005 0.84294 0.91143 1.21886 0.99589 0.98828 0.99176 1.21945 0.87229 0.96552 0.95233 1.45849 1.10695 1.58508 1.19118 1.20527 0.84303 0.79351 0.86349 1.90634 1.83437 1.52269 1.19496 1.21084 0.84133 1.03315 0.93798 1.45533 1.10529 1.60910 1.19320 1.17245 0.81924 0.77099 0.85834 1.90817 1.84283 1.48545 1.21269 1.24480 0.99219 1.17199 1.01612 1.21059 0.90447 0.96175 1.01122 1.20283 1.02569 1.03909 0.92147 1.25826 1.00236 1.04393 1.04782 1.83261 1.08246 1.53502 1.06110 0.94083 0.92720 0.93269 0.95267 0.93654 0.94240 0.93111 0.93838 0.93445 0.92291 0.92514 0.75030 0.87367 0.87421 0.74953 0.83090 0.80986 0.78141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 9.86 71.98 0.71 -4.44 16 2 C 0.14 5.27 5.67 86.38 0.49 5.76 16 3 N -0.59 -25.39 1.85 -678.03 -1.25 -26.64 16 4 C -0.26 -12.59 9.26 84.03 0.78 -11.82 16 5 H 0.06 2.92 7.89 -2.91 -0.02 2.90 16 6 C -0.03 -1.50 4.85 84.86 0.41 -1.09 16 7 N -0.91 -48.44 10.60 21.65 0.23 -48.21 16 8 Si 0.95 41.70 29.59 68.60 2.03 43.73 16 9 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.18 7.35 1.92 44.99 0.09 7.44 16 13 H 0.07 3.34 6.04 -2.39 -0.01 3.33 16 14 C -0.14 -5.29 9.05 71.98 0.65 -4.64 16 15 C 0.12 4.06 4.34 86.38 0.37 4.44 16 16 N -0.69 -22.64 3.99 -463.07 -1.85 -24.48 16 17 C 0.51 15.70 7.66 87.66 0.67 16.37 16 18 O -0.58 -20.12 15.67 -3.03 -0.05 -20.17 16 19 C 0.10 2.80 6.15 85.63 0.53 3.32 16 20 N -0.71 -18.67 5.52 -470.91 -2.60 -21.27 16 21 C 0.59 16.49 7.78 86.42 0.67 17.16 16 22 O -0.57 -19.39 16.84 -4.35 -0.07 -19.47 16 23 C -0.31 -6.73 6.45 24.08 0.16 -6.58 16 24 C -0.05 -1.00 10.01 21.72 0.22 -0.78 16 25 C -0.16 -2.02 10.15 21.08 0.21 -1.80 16 26 C -0.21 -2.39 10.92 66.81 0.73 -1.66 16 27 S 0.22 3.46 22.16 -56.49 -1.25 2.21 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.05 1.63 4.99 -2.39 -0.01 1.62 16 31 H 0.03 1.17 8.09 -2.39 -0.02 1.15 16 32 H 0.05 1.64 6.45 -2.39 -0.02 1.62 16 33 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.55 6.67 -2.39 -0.02 1.53 16 36 H 0.05 2.16 7.40 -2.39 -0.02 2.14 16 37 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.06 2.00 7.05 -2.39 -0.02 1.98 16 39 H 0.41 14.10 7.90 -92.71 -0.73 13.36 16 40 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.11 2.81 8.14 -2.38 -0.02 2.80 16 42 H 0.41 10.33 6.55 -92.71 -0.61 9.72 16 43 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 44 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -61.17 381.97 1.57 -59.60 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.31 Total: 33.01 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 6.69 Total: 21.69 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -5.47 Total: -120.60 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.12 Total: -39.63 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.25 Total: 2.21 kcal Total: -61.17 1.57 -59.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156733439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.759 kcal (2) G-P(sol) polarization free energy of solvation -61.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds