Wall clock time and date at job start Tue Mar 31 2020 22:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47413 * 2 1 4 4 C 1.34220 * 117.00116 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00362 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00217 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47479 * 179.97438 * 6 4 3 8 8 C 1.46498 * 119.99857 * 270.00147 * 7 6 4 9 9 C 1.50700 * 109.46964 * 269.99687 * 8 7 6 10 10 H 1.07998 * 119.99904 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99863 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00154 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99830 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47172 * 90.00123 * 13 11 9 15 15 H 1.48506 * 109.46838 * 209.99728 * 13 11 9 16 16 H 1.48496 * 109.47151 * 329.99446 * 13 11 9 17 17 C 1.39370 * 119.99827 * 89.99980 * 7 6 4 18 18 C 1.39606 * 120.06942 * 4.97445 * 17 7 6 19 19 C 1.38324 * 117.97082 * 180.02562 * 18 17 7 20 20 C 1.39637 * 117.96287 * 0.02562 * 19 18 17 21 21 S 1.76204 * 120.08132 * 180.02562 * 20 19 18 22 22 C 1.81404 * 103.00031 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47217 * 174.99717 * 22 21 20 24 24 C 1.52994 * 109.47004 * 295.00145 * 22 21 20 25 25 N 1.32331 * 119.84125 * 0.02562 * 20 19 18 26 26 N 1.28354 * 122.17301 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.47470 * 300.00533 * 1 2 3 28 28 H 1.09003 * 109.46416 * 60.00814 * 1 2 3 29 29 H 1.09001 * 109.46955 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47470 * 239.99466 * 2 1 3 31 31 H 1.09007 * 109.46278 * 119.99677 * 2 1 3 32 32 H 1.08996 * 109.46778 * 59.99530 * 6 4 3 33 33 H 1.09003 * 109.46760 * 300.00096 * 6 4 3 34 34 H 1.08995 * 109.47261 * 30.00109 * 8 7 6 35 35 H 1.09004 * 109.46567 * 150.00008 * 8 7 6 36 36 H 0.97007 * 120.00005 * 180.02562 * 12 11 9 37 37 H 1.08000 * 121.01435 * 0.02562 * 18 17 7 38 38 H 1.07998 * 121.01868 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.46793 * 54.99797 * 22 21 20 40 40 H 1.09004 * 109.46547 * 59.99891 * 23 22 21 41 41 H 1.09003 * 109.47104 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47499 * 300.00068 * 23 22 21 43 43 H 1.09000 * 109.47334 * 299.99883 * 24 22 21 44 44 H 1.08999 * 109.47653 * 59.99783 * 24 22 21 45 45 H 1.09003 * 109.47034 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3838 2.8607 0.0014 8 6 6.1141 2.8233 1.2708 9 6 6.4390 4.2293 1.7050 10 1 6.1317 5.0670 1.0965 11 6 7.1284 4.4463 2.8791 12 7 7.5021 3.4263 3.6204 13 14 7.5304 6.1892 3.4177 14 1 6.4258 6.7143 4.2599 15 1 8.7920 6.1866 4.2012 16 1 7.6933 7.0522 2.2203 17 6 6.0808 2.8233 -1.2050 18 6 5.3956 2.9632 -2.4133 19 6 6.1302 2.9189 -3.5845 20 6 7.5110 2.7364 -3.4849 21 16 8.5007 2.6722 -4.9413 22 6 10.1748 2.4285 -4.2866 23 6 11.1517 2.2262 -5.4466 24 6 10.5905 3.6593 -3.4785 25 7 8.0745 2.6119 -2.2941 26 7 7.3925 2.6530 -1.2075 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 3.5844 3.4700 0.8894 33 1 3.5853 3.4689 -0.8905 34 1 5.4983 2.3415 2.0302 35 1 7.0385 2.2601 1.1416 36 1 7.9868 3.5789 4.4467 37 1 4.3247 3.1018 -2.4329 38 1 5.6503 3.0215 -4.5466 39 1 10.1886 1.5493 -3.6424 40 1 11.1378 3.1054 -6.0908 41 1 12.1576 2.0793 -5.0532 42 1 10.8555 1.3493 -6.0223 43 1 10.5768 4.5386 -4.1226 44 1 9.8946 3.8035 -2.6520 45 1 11.5963 3.5127 -3.0847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:28 Heat of formation + Delta-G solvation = -23.179796 kcal Electronic energy + Delta-G solvation = -27183.677096 eV Core-core repulsion = 23328.515030 eV Total energy + Delta-G solvation = -3855.162066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61312 -40.07881 -37.06237 -35.88365 -34.69054 -32.99829 -32.54173 -31.91575 -30.97058 -28.80626 -27.22927 -26.37032 -24.36131 -23.78113 -23.08267 -21.94582 -21.49518 -20.51016 -17.87947 -17.63308 -17.14247 -16.93689 -16.51603 -16.40953 -15.90543 -15.59295 -14.75924 -14.62783 -14.51936 -14.28813 -13.99680 -13.61963 -13.39260 -13.22371 -13.04939 -12.90010 -12.44452 -12.31143 -12.23477 -12.01013 -11.69917 -11.61689 -11.42691 -11.29854 -11.27098 -11.12262 -10.73489 -10.65997 -10.53213 -10.51818 -10.26666 -10.12419 -10.10948 -9.96306 -9.55588 -9.01198 -8.47960 -8.06061 -6.89747 -6.07202 -4.15063 1.24280 1.48116 1.65280 2.38054 2.39668 2.65230 3.27017 3.34520 3.37421 3.52571 4.08538 4.39555 4.77476 4.81661 4.82491 4.85729 4.86248 4.91819 4.94528 5.00512 5.10029 5.17557 5.25624 5.29727 5.34230 5.55334 5.58241 5.60600 5.64724 5.66887 5.81781 5.86824 5.87112 5.93297 6.04787 6.14155 6.19823 6.51217 6.52352 6.86539 7.38920 7.64540 7.82603 7.94142 8.00324 8.14706 8.87804 9.33148 9.50121 10.98977 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006937 B = 0.004333 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4035.284950 B = 6460.533733 C = 9854.709893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.434 3.566 5 O -0.491 6.491 6 C 0.135 3.865 7 N -0.561 5.561 8 C 0.256 3.744 9 C -0.532 4.532 10 H 0.058 0.942 11 C 0.065 3.935 12 N -0.890 5.890 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.362 3.638 18 C -0.183 4.183 19 C -0.058 4.058 20 C -0.015 4.015 21 S -0.088 6.088 22 C -0.066 4.066 23 C -0.134 4.134 24 C -0.149 4.149 25 N -0.199 5.199 26 N -0.265 5.265 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.031 0.969 35 H 0.055 0.945 36 H 0.264 0.736 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -2.879 -15.053 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.274 3.726 5 O -0.376 6.376 6 C 0.007 3.993 7 N -0.271 5.271 8 C 0.137 3.863 9 C -0.571 4.571 10 H 0.077 0.923 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.119 3.881 18 C -0.218 4.218 19 C -0.091 4.091 20 C -0.274 4.274 21 S 0.145 5.855 22 C -0.195 4.195 23 C -0.193 4.193 24 C -0.208 4.208 25 N -0.045 5.045 26 N -0.117 5.117 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.150 0.850 33 H 0.127 0.873 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.016 -3.396 -14.896 16.420 hybrid contribution -0.810 0.763 0.987 1.487 sum -6.825 -2.633 -13.909 15.716 Atomic orbital electron populations 1.21793 0.92786 1.02745 1.03450 1.22970 0.95135 0.80741 1.02515 1.86504 1.24926 1.32070 1.84493 1.25033 0.80420 0.94265 0.72904 1.90699 1.60266 1.42855 1.43760 1.20931 0.81800 0.89719 1.06819 1.46794 1.02179 1.73137 1.04955 1.19458 0.92577 0.97634 0.76618 1.21406 1.37040 0.92138 1.06474 0.92330 1.24904 0.95306 0.97239 0.96290 1.69941 1.38616 1.30088 1.14174 0.86508 0.77897 0.84451 0.78624 1.20625 1.21047 1.19910 1.19963 0.91138 0.90248 0.86735 1.21715 1.01366 1.06906 0.91780 1.21551 0.92270 0.96177 0.99098 1.24044 0.95518 1.09233 0.98610 1.84982 1.02212 1.91917 1.06382 1.23148 0.92731 1.03259 1.00355 1.21650 0.98285 1.02444 0.96886 1.22095 1.02425 0.95539 1.00754 1.73286 1.29639 1.07825 0.93769 1.73000 1.04221 1.16640 1.17884 0.91415 0.91590 0.90483 0.91536 0.91296 0.84993 0.87268 0.95118 0.92702 0.92602 0.84020 0.83849 0.88409 0.91854 0.90857 0.91883 0.92357 0.90150 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.36 -4.98 10.22 -39.23 -0.40 -5.39 16 4 C 0.43 7.15 8.03 36.01 0.29 7.44 16 5 O -0.49 -9.97 16.18 -18.75 -0.30 -10.27 16 6 C 0.13 2.13 5.86 -5.19 -0.03 2.10 16 7 N -0.56 -11.70 2.07 -176.34 -0.36 -12.06 16 8 C 0.26 6.54 5.24 -5.19 -0.03 6.51 16 9 C -0.53 -14.41 9.39 -34.44 -0.32 -14.74 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 12 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 13 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.36 7.46 7.46 -154.59 -1.15 6.30 16 18 C -0.18 -2.95 9.34 -39.04 -0.36 -3.31 16 19 C -0.06 -0.88 9.95 -39.03 -0.39 -1.27 16 20 C -0.01 -0.25 6.92 -16.81 -0.12 -0.37 16 21 S -0.09 -1.21 21.35 -107.50 -2.30 -3.51 16 22 C -0.07 -0.85 2.90 -26.74 -0.08 -0.92 16 23 C -0.13 -1.28 9.20 37.16 0.34 -0.94 16 24 C -0.15 -2.04 9.03 37.15 0.34 -1.71 16 25 N -0.20 -4.05 8.63 31.47 0.27 -3.78 16 26 N -0.27 -6.10 10.25 31.29 0.32 -5.78 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.07 0.83 8.13 -51.92 -0.42 0.41 16 32 H 0.13 1.97 8.07 -51.93 -0.42 1.55 16 33 H 0.11 1.32 6.03 -51.93 -0.31 1.00 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.05 1.59 7.32 -51.93 -0.38 1.21 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.14 1.77 6.14 -52.49 -0.32 1.45 16 38 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.38 5.98 -51.93 -0.31 1.07 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -33.44 393.44 -8.91 -42.35 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.78 Total: 0.52 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.00 Total: 0.92 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.96 Total: -46.89 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.70 Total: -15.66 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.30 Total: -3.51 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.44 -8.91 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.166 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds