Wall clock time and date at job start Tue Mar 31 2020 22:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47413 * 2 1 4 4 C 1.34220 * 117.00116 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00362 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00217 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47479 * 179.97438 * 6 4 3 8 8 C 1.46498 * 119.99857 * 270.00147 * 7 6 4 9 9 C 1.50700 * 109.46964 * 269.99687 * 8 7 6 10 10 H 1.07998 * 119.99904 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99863 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00154 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99830 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47172 * 90.00123 * 13 11 9 15 15 H 1.48506 * 109.46838 * 209.99728 * 13 11 9 16 16 H 1.48496 * 109.47151 * 329.99446 * 13 11 9 17 17 C 1.39370 * 119.99827 * 89.99980 * 7 6 4 18 18 C 1.39606 * 120.06942 * 4.97445 * 17 7 6 19 19 C 1.38324 * 117.97082 * 180.02562 * 18 17 7 20 20 C 1.39637 * 117.96287 * 0.02562 * 19 18 17 21 21 S 1.76204 * 120.08132 * 180.02562 * 20 19 18 22 22 C 1.81404 * 103.00031 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47217 * 174.99717 * 22 21 20 24 24 C 1.52994 * 109.47004 * 295.00145 * 22 21 20 25 25 N 1.32331 * 119.84125 * 0.02562 * 20 19 18 26 26 N 1.28354 * 122.17301 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.47470 * 300.00533 * 1 2 3 28 28 H 1.09003 * 109.46416 * 60.00814 * 1 2 3 29 29 H 1.09001 * 109.46955 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47470 * 239.99466 * 2 1 3 31 31 H 1.09007 * 109.46278 * 119.99677 * 2 1 3 32 32 H 1.08996 * 109.46778 * 59.99530 * 6 4 3 33 33 H 1.09003 * 109.46760 * 300.00096 * 6 4 3 34 34 H 1.08995 * 109.47261 * 30.00109 * 8 7 6 35 35 H 1.09004 * 109.46567 * 150.00008 * 8 7 6 36 36 H 0.97007 * 120.00005 * 180.02562 * 12 11 9 37 37 H 1.08000 * 121.01435 * 0.02562 * 18 17 7 38 38 H 1.07998 * 121.01868 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.46793 * 54.99797 * 22 21 20 40 40 H 1.09004 * 109.46547 * 59.99891 * 23 22 21 41 41 H 1.09003 * 109.47104 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47499 * 300.00068 * 23 22 21 43 43 H 1.09000 * 109.47334 * 299.99883 * 24 22 21 44 44 H 1.08999 * 109.47653 * 59.99783 * 24 22 21 45 45 H 1.09003 * 109.47034 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3838 2.8607 0.0014 8 6 6.1141 2.8233 1.2708 9 6 6.4390 4.2293 1.7050 10 1 6.1317 5.0670 1.0965 11 6 7.1284 4.4463 2.8791 12 7 7.5021 3.4263 3.6204 13 14 7.5304 6.1892 3.4177 14 1 6.4258 6.7143 4.2599 15 1 8.7920 6.1866 4.2012 16 1 7.6933 7.0522 2.2203 17 6 6.0808 2.8233 -1.2050 18 6 5.3956 2.9632 -2.4133 19 6 6.1302 2.9189 -3.5845 20 6 7.5110 2.7364 -3.4849 21 16 8.5007 2.6722 -4.9413 22 6 10.1748 2.4285 -4.2866 23 6 11.1517 2.2262 -5.4466 24 6 10.5905 3.6593 -3.4785 25 7 8.0745 2.6119 -2.2941 26 7 7.3925 2.6530 -1.2075 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 3.5844 3.4700 0.8894 33 1 3.5853 3.4689 -0.8905 34 1 5.4983 2.3415 2.0302 35 1 7.0385 2.2601 1.1416 36 1 7.9868 3.5789 4.4467 37 1 4.3247 3.1018 -2.4329 38 1 5.6503 3.0215 -4.5466 39 1 10.1886 1.5493 -3.6424 40 1 11.1378 3.1054 -6.0908 41 1 12.1576 2.0793 -5.0532 42 1 10.8555 1.3493 -6.0223 43 1 10.5768 4.5386 -4.1226 44 1 9.8946 3.8035 -2.6520 45 1 11.5963 3.5127 -3.0847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:27 Heat of formation + Delta-G solvation = -41.950049 kcal Electronic energy + Delta-G solvation = -27184.491035 eV Core-core repulsion = 23328.515030 eV Total energy + Delta-G solvation = -3855.976005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98714 -41.38705 -38.42489 -37.30454 -35.69659 -34.91725 -34.01778 -32.87757 -32.32987 -30.45501 -28.32975 -27.87301 -25.87252 -25.21516 -24.28021 -23.27177 -22.61912 -21.84301 -19.22749 -18.95331 -18.60889 -18.41968 -18.21368 -17.61759 -17.17621 -16.82047 -16.51199 -16.07987 -15.67553 -15.48626 -15.30260 -14.84497 -14.71526 -14.44062 -14.25778 -14.15854 -13.63066 -13.45804 -13.32080 -13.19892 -13.12134 -12.94483 -12.72363 -12.61607 -12.55252 -12.50455 -12.31892 -12.20659 -12.17428 -11.74021 -11.63083 -11.55086 -11.50706 -11.26441 -11.23984 -10.63526 -10.37695 -9.44504 -8.37332 -8.09007 -6.35361 -0.06510 0.12488 0.48972 1.10321 1.21982 1.37111 1.40472 1.45012 1.51579 2.10502 2.39660 2.67992 3.10101 3.51776 3.62645 3.63495 3.76048 3.86643 3.91370 3.95713 3.98560 4.09030 4.11344 4.32871 4.33793 4.35477 4.56772 4.68976 4.72046 4.80811 4.83343 4.87217 4.89924 4.93409 5.02744 5.07760 5.13188 5.23185 5.29274 5.37421 5.41458 5.65563 6.00100 6.07543 6.25839 6.71853 6.75907 7.34283 7.91922 8.87028 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006937 B = 0.004333 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4035.284950 B = 6460.533733 C = 9854.709893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.353 6.353 4 C 0.442 3.558 5 O -0.538 6.538 6 C 0.132 3.868 7 N -0.575 5.575 8 C 0.280 3.720 9 C -0.535 4.535 10 H 0.060 0.940 11 C 0.011 3.989 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.263 1.263 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.338 3.662 18 C -0.170 4.170 19 C -0.052 4.052 20 C -0.024 4.024 21 S -0.048 6.048 22 C -0.071 4.071 23 C -0.127 4.127 24 C -0.146 4.146 25 N -0.232 5.232 26 N -0.330 5.330 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.140 0.860 33 H 0.156 0.844 34 H 0.007 0.993 35 H 0.006 0.994 36 H 0.266 0.734 37 H 0.184 0.816 38 H 0.191 0.809 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 -1.382 -17.993 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.269 6.269 4 C 0.284 3.716 5 O -0.426 6.426 6 C 0.006 3.994 7 N -0.286 5.286 8 C 0.159 3.841 9 C -0.573 4.573 10 H 0.078 0.922 11 C -0.188 4.188 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.188 1.188 15 H -0.211 1.211 16 H -0.196 1.196 17 C 0.095 3.905 18 C -0.204 4.204 19 C -0.084 4.084 20 C -0.285 4.285 21 S 0.186 5.814 22 C -0.201 4.201 23 C -0.186 4.186 24 C -0.205 4.205 25 N -0.076 5.076 26 N -0.181 5.181 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.157 0.843 33 H 0.173 0.827 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.201 0.799 38 H 0.209 0.791 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.774 -1.892 -17.867 19.577 hybrid contribution -0.265 0.210 1.719 1.752 sum -8.040 -1.683 -16.149 18.118 Atomic orbital electron populations 1.21809 0.89638 1.04382 1.04043 1.23291 0.97509 0.79454 1.02028 1.86502 1.23151 1.33528 1.83696 1.25113 0.80956 0.93948 0.71581 1.90691 1.61498 1.44294 1.46166 1.21255 0.78966 0.89786 1.09355 1.46510 1.03909 1.74631 1.03556 1.18718 0.90760 0.96054 0.78530 1.21660 1.36590 0.92722 1.06352 0.92159 1.25820 0.95154 1.01400 0.96463 1.70084 1.39642 1.32466 1.14722 0.85428 0.77921 0.79285 0.78217 1.18813 1.21116 1.19645 1.20286 0.91076 0.91247 0.87939 1.22112 1.03208 1.04902 0.90139 1.22133 0.91366 0.94179 1.00707 1.24813 0.97604 1.07066 0.98995 1.84762 1.01856 1.91109 1.03704 1.23266 0.93363 1.01972 1.01456 1.21651 0.97896 1.03398 0.95644 1.22030 1.01965 0.96597 0.99893 1.73215 1.30140 1.09889 0.94403 1.72828 1.06186 1.19117 1.19934 0.91251 0.90503 0.88327 0.91471 0.92549 0.84288 0.82661 0.97490 0.97541 0.92548 0.79923 0.79140 0.90349 0.90679 0.89429 0.90931 0.90999 0.93972 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.29 71.98 0.74 -1.22 16 2 C 0.05 1.13 6.19 71.98 0.45 1.57 16 3 O -0.35 -9.26 10.22 -51.32 -0.52 -9.79 16 4 C 0.44 14.50 8.03 71.24 0.57 15.08 16 5 O -0.54 -22.64 16.18 21.96 0.36 -22.28 16 6 C 0.13 4.08 5.86 85.63 0.50 4.58 16 7 N -0.57 -24.73 2.07 -711.83 -1.47 -26.20 16 8 C 0.28 15.29 5.24 85.63 0.45 15.74 16 9 C -0.53 -30.05 9.39 25.60 0.24 -29.81 16 10 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 11 C 0.01 0.61 5.46 84.65 0.46 1.07 16 12 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 13 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 14 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 15 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 17 C 0.34 14.23 7.46 133.09 0.99 15.22 16 18 C -0.17 -5.14 9.34 22.62 0.21 -4.93 16 19 C -0.05 -1.43 9.95 22.63 0.23 -1.20 16 20 C -0.02 -0.80 6.92 84.96 0.59 -0.21 16 21 S -0.05 -1.22 21.35 -56.49 -1.21 -2.43 16 22 C -0.07 -1.78 2.90 30.59 0.09 -1.69 16 23 C -0.13 -2.13 9.20 71.98 0.66 -1.47 16 24 C -0.15 -3.98 9.03 71.98 0.65 -3.33 16 25 N -0.23 -9.87 8.63 -54.34 -0.47 -10.34 16 26 N -0.33 -16.08 10.25 -54.93 -0.56 -16.65 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.06 1.39 8.13 -2.38 -0.02 1.37 16 32 H 0.14 4.08 8.07 -2.39 -0.02 4.06 16 33 H 0.16 3.25 6.03 -2.39 -0.01 3.24 16 34 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 35 H 0.01 0.41 7.32 -2.39 -0.02 0.39 16 36 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 37 H 0.18 3.81 6.14 -2.91 -0.02 3.79 16 38 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.04 1.50 5.98 -2.39 -0.01 1.48 16 45 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -79.82 393.44 6.25 -73.57 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.99 Total: 14.51 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 6.83 Total: 9.41 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -2.22 Total: -109.64 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.17 Total: -32.07 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -1.21 Total: -2.43 kcal Total: -79.82 6.25 -73.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.620 kcal (2) G-P(sol) polarization free energy of solvation -79.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds