Wall clock time and date at job start Tue Mar 31 2020 22:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 S 1.81396 * 109.46915 * 2 1 4 4 O 1.42102 * 110.54546 * 68.37272 * 3 2 1 5 5 O 1.42100 * 110.54376 * 291.62170 * 3 2 1 6 6 N 1.65601 * 104.44650 * 179.97438 * 3 2 1 7 7 C 1.46931 * 120.63020 * 90.00084 * 6 3 2 8 8 C 1.53192 * 108.77629 * 126.37154 * 7 6 3 9 9 C 1.53032 * 109.31506 * 54.63222 * 8 7 6 10 10 N 1.46500 * 109.46138 * 178.61495 * 9 8 7 11 11 C 1.38828 * 119.99944 * 205.00237 * 10 9 8 12 12 C 1.39797 * 119.58543 * 0.02562 * 11 10 9 13 13 C 1.38591 * 119.48731 * 179.97438 * 12 11 10 14 14 C 1.38386 * 118.68420 * 359.97438 * 13 12 11 15 15 C 1.40554 * 119.15006 * 359.97438 * 14 13 12 16 16 C 1.41312 * 119.78649 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99749 * 353.78323 * 16 15 14 18 18 C 1.40026 * 120.00434 * 173.77756 * 16 15 14 19 19 N 1.30747 * 119.99465 * 6.35312 * 18 16 15 20 20 Si 1.86796 * 120.00347 * 186.35066 * 18 16 15 21 21 H 1.48494 * 109.47188 * 94.98566 * 20 18 16 22 22 H 1.48510 * 109.47025 * 214.98807 * 20 18 16 23 23 H 1.48502 * 109.47069 * 334.98401 * 20 18 16 24 24 N 1.31957 * 119.57928 * 179.72601 * 11 10 9 25 25 C 1.53040 * 109.53909 * 298.63652 * 9 8 7 26 26 C 1.46917 * 120.63296 * 269.97779 * 6 3 2 27 27 H 1.09002 * 109.46812 * 60.00293 * 1 2 3 28 28 H 1.09001 * 109.47220 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47022 * 300.00534 * 1 2 3 30 30 H 1.08993 * 109.47053 * 239.99362 * 2 1 3 31 31 H 1.09002 * 109.46812 * 119.99707 * 2 1 3 32 32 H 1.09002 * 109.58626 * 6.58180 * 7 6 3 33 33 H 1.08999 * 109.58577 * 246.15589 * 7 6 3 34 34 H 1.09004 * 109.49667 * 174.58823 * 8 7 6 35 35 H 1.09003 * 109.49427 * 294.67742 * 8 7 6 36 36 H 1.09007 * 109.45903 * 58.65902 * 9 8 7 37 37 H 0.96997 * 120.00329 * 25.00044 * 10 9 8 38 38 H 1.07996 * 120.25264 * 359.95096 * 12 11 10 39 39 H 1.08005 * 120.66018 * 180.02562 * 13 12 11 40 40 H 1.08002 * 120.42679 * 179.97438 * 14 13 12 41 41 H 0.97004 * 120.00021 * 179.97438 * 19 18 16 42 42 H 1.09007 * 109.49774 * 181.31517 * 25 9 8 43 43 H 1.09000 * 109.49773 * 301.41245 * 25 9 8 44 44 H 1.09002 * 109.59271 * 113.84328 * 26 6 3 45 45 H 1.09004 * 109.70757 * 353.48433 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.5306 1.4996 -1.2633 8 6 5.6203 2.5761 -1.2490 9 6 6.4856 2.4040 0.0014 10 7 7.5492 3.4114 0.0015 11 6 8.7299 3.1743 0.6922 12 6 8.8948 1.9709 1.3843 13 6 10.0745 1.7361 2.0728 14 6 11.0599 2.7076 2.0528 15 6 10.8348 3.8965 1.3377 16 6 11.8316 4.8977 1.3088 17 1 12.7195 4.7934 1.9147 18 6 11.6683 6.0250 0.4944 19 7 10.5424 6.2134 -0.1430 20 14 13.0590 7.2597 0.3186 21 1 13.8559 6.9386 -0.8925 22 1 12.4937 8.6271 0.1911 23 1 13.9327 7.1952 1.5177 24 7 9.6846 4.0852 0.6823 25 6 5.6193 2.5770 1.2511 26 6 4.5295 1.5004 1.2652 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8522 1.6773 -2.0978 33 1 4.9897 0.5163 -1.3658 34 1 6.2423 2.4759 -2.1385 35 1 5.1569 3.5627 -1.2378 36 1 6.9290 1.4082 0.0019 37 1 7.4285 4.2442 -0.4810 38 1 8.1089 1.2302 1.3828 39 1 10.2223 0.8129 2.6134 40 1 11.9900 2.5541 2.5799 41 1 10.4290 6.9945 -0.7069 42 1 6.2407 2.4775 2.1412 43 1 5.1559 3.5636 1.2388 44 1 4.9886 0.5172 1.3689 45 1 3.8521 1.6773 2.1006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164318949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:34 Heat of formation + Delta-G solvation = -56.143433 kcal Electronic energy + Delta-G solvation = -27467.505578 eV Core-core repulsion = 23610.914101 eV Total energy + Delta-G solvation = -3856.591477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.46924 -39.32823 -38.24728 -37.02454 -36.35144 -35.08749 -34.00134 -32.64160 -32.14894 -31.81579 -29.84251 -27.28297 -25.27029 -24.58449 -24.41216 -23.31313 -22.27693 -21.36756 -19.76465 -19.28125 -18.80882 -17.91329 -17.41254 -17.19437 -16.71354 -16.49566 -16.05395 -15.81253 -15.38337 -15.24577 -15.14943 -15.03201 -14.83294 -14.28646 -14.18645 -13.98905 -13.65973 -13.46900 -13.44880 -13.38378 -13.20476 -12.95973 -12.90670 -12.73153 -12.58700 -12.51355 -12.39104 -12.16029 -12.06916 -11.95930 -11.69618 -11.60941 -11.37821 -11.20973 -10.59241 -9.97949 -9.80414 -9.40667 -8.25490 -8.22329 -6.45579 -0.75443 1.08333 1.38846 1.40611 1.54626 1.58274 1.63428 2.24866 2.64553 2.92560 2.93543 3.13294 3.58224 3.77107 3.86906 3.93916 3.98401 4.12995 4.18525 4.27730 4.40061 4.42737 4.44125 4.55970 4.70661 4.72994 4.81066 4.83477 4.86814 4.87528 4.95999 5.01947 5.04305 5.10546 5.16397 5.20341 5.24659 5.33679 5.43476 5.63554 5.75801 6.00629 6.12440 6.25019 6.60872 6.85954 6.97554 7.25364 8.37637 8.53070 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025034 B = 0.002425 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.225462 B =11545.794234 C =12157.664822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.602 4.602 3 S 2.600 3.400 4 O -0.996 6.996 5 O -0.992 6.992 6 N -1.001 6.001 7 C 0.125 3.875 8 C -0.136 4.136 9 C 0.166 3.834 10 N -0.732 5.732 11 C 0.396 3.604 12 C -0.359 4.359 13 C -0.030 4.030 14 C -0.346 4.346 15 C 0.259 3.741 16 C -0.474 4.474 17 H 0.085 0.915 18 C 0.026 3.974 19 N -0.754 5.754 20 Si 0.985 3.015 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.256 1.256 24 N -0.570 5.570 25 C -0.145 4.145 26 C 0.125 3.875 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.388 0.612 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.275 0.725 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.103 0.897 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.999 -14.784 -2.702 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.735 4.735 3 S 2.699 3.301 4 O -0.986 6.986 5 O -0.983 6.983 6 N -0.839 5.839 7 C -0.001 4.001 8 C -0.176 4.176 9 C 0.061 3.939 10 N -0.365 5.365 11 C 0.155 3.845 12 C -0.384 4.384 13 C -0.054 4.054 14 C -0.369 4.369 15 C 0.131 3.869 16 C -0.506 4.506 17 H 0.103 0.897 18 C -0.196 4.196 19 N -0.376 5.376 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.179 1.179 24 N -0.292 5.292 25 C -0.186 4.186 26 C 0.000 4.000 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.174 0.826 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.221 0.779 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.121 0.879 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.792 -13.227 -3.248 23.209 hybrid contribution 1.023 0.023 0.336 1.077 sum -17.769 -13.203 -2.912 22.328 Atomic orbital electron populations 1.21711 0.90441 1.06513 1.03488 1.30314 1.07028 1.21910 1.14298 1.05160 0.72937 0.79243 0.72736 1.93541 1.83681 1.74868 1.46521 1.93536 1.83642 1.74790 1.46292 1.57594 1.23856 1.90133 1.12329 1.21559 0.93891 0.99833 0.84786 1.22114 0.97485 1.00299 0.97694 1.20855 0.86085 0.92302 0.94680 1.44503 1.13916 1.21358 1.56762 1.18997 0.87135 0.89878 0.88448 1.20977 1.02030 1.00297 1.15128 1.21029 0.92376 0.97183 0.94827 1.21679 1.02063 0.98807 1.14393 1.18669 0.89564 0.91530 0.87099 1.19914 1.04016 1.03266 1.23454 0.89727 1.26952 0.98741 1.00031 0.93860 1.70258 1.24627 1.24248 1.18468 0.85168 0.77918 0.76675 0.79710 1.18935 1.19452 1.17940 1.68175 1.02270 1.30896 1.27876 1.22342 0.97558 0.99450 0.99216 1.21495 0.93908 0.99821 0.84779 0.91063 0.87635 0.91230 0.82308 0.82552 0.87862 0.87712 0.89554 0.92620 0.89530 0.77851 0.85610 0.85165 0.88227 0.91497 0.91452 0.93647 0.87909 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.92 71.98 0.71 -0.60 16 2 C -0.60 -4.53 6.90 71.98 0.50 -4.03 16 3 S 2.60 47.23 5.45 -56.49 -0.31 46.92 16 4 O -1.00 -25.86 16.59 -127.65 -2.12 -27.97 16 5 O -0.99 -24.62 16.59 -127.65 -2.12 -26.74 16 6 N -1.00 -17.25 3.22 -513.06 -1.65 -18.90 16 7 C 0.12 1.99 6.43 86.36 0.56 2.54 16 8 C -0.14 -3.14 5.55 30.67 0.17 -2.97 16 9 C 0.17 4.70 2.10 45.02 0.09 4.80 16 10 N -0.73 -28.93 5.24 -324.33 -1.70 -30.62 16 11 C 0.40 19.10 7.63 133.42 1.02 20.12 16 12 C -0.36 -15.43 8.83 22.73 0.20 -15.23 16 13 C -0.03 -1.32 10.15 22.39 0.23 -1.09 16 14 C -0.35 -17.72 9.83 22.87 0.22 -17.50 16 15 C 0.26 14.94 6.54 40.18 0.26 15.20 16 16 C -0.47 -26.86 9.13 23.46 0.21 -26.65 16 17 H 0.08 4.52 7.85 -2.91 -0.02 4.49 16 18 C 0.03 1.36 5.49 85.29 0.47 1.82 16 19 N -0.75 -41.86 11.48 21.84 0.25 -41.61 16 20 Si 0.98 39.68 29.56 68.60 2.03 41.70 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 N -0.57 -32.43 7.92 -186.58 -1.48 -33.90 16 25 C -0.14 -3.91 5.56 30.67 0.17 -3.74 16 26 C 0.13 2.30 6.42 86.37 0.55 2.85 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.16 0.53 8.14 -2.39 -0.02 0.52 16 32 H 0.10 1.53 6.86 -2.39 -0.02 1.51 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 2.31 6.44 -2.38 -0.02 2.29 16 37 H 0.39 16.14 8.72 -92.71 -0.81 15.34 16 38 H 0.13 4.43 6.06 -2.91 -0.02 4.42 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 41 H 0.27 13.84 8.29 -92.71 -0.77 13.07 16 42 H 0.07 2.02 7.66 -2.38 -0.02 2.00 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.10 1.74 6.87 -2.39 -0.02 1.72 16 Total: -1.00 -78.88 374.15 -1.53 -80.41 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: 0.20 Total: 35.20 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 5.37 Total: -24.48 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -4.58 Total: -125.04 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -4.24 Total: -54.71 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.70 kcal Atomic # 16 Polarization: 47.23 SS G_CDS: -0.31 Total: 46.92 kcal Total: -78.88 -1.53 -80.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164318949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.265 kcal (2) G-P(sol) polarization free energy of solvation -78.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds