Wall clock time and date at job start Tue Mar 31 2020 22:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81398 * 109.47228 * 2 1 4 4 O 1.42109 * 110.54184 * 68.37667 * 3 2 1 5 5 O 1.42095 * 110.54303 * 291.62578 * 3 2 1 6 6 N 1.65603 * 104.45067 * 179.97438 * 3 2 1 7 7 C 1.46922 * 120.62950 * 90.00106 * 6 3 2 8 8 C 1.53190 * 108.77769 * 233.62968 * 7 6 3 9 9 C 1.53039 * 109.31416 * 305.36641 * 8 7 6 10 10 N 1.46498 * 109.46228 * 181.38296 * 9 8 7 11 11 C 1.39721 * 120.00079 * 154.97583 * 10 9 8 12 12 C 1.39338 * 120.36431 * 359.97438 * 11 10 9 13 13 N 1.31988 * 121.20468 * 180.02562 * 12 11 10 14 14 C 1.31486 * 122.06474 * 359.97438 * 13 12 11 15 15 C 1.40773 * 120.56086 * 0.02562 * 14 13 12 16 16 C 1.41419 * 120.61964 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00171 * 155.61886 * 16 15 14 18 18 C 1.39934 * 120.00220 * 335.61931 * 16 15 14 19 19 N 1.30833 * 119.99940 * 342.37334 * 18 16 15 20 20 Si 1.86806 * 120.00198 * 162.37265 * 18 16 15 21 21 H 1.48496 * 109.46981 * 94.67804 * 20 18 16 22 22 H 1.48498 * 109.47327 * 214.67745 * 20 18 16 23 23 H 1.48501 * 109.46970 * 334.67639 * 20 18 16 24 24 C 1.38665 * 120.36434 * 179.97438 * 11 10 9 25 25 C 1.53045 * 109.52707 * 61.36965 * 9 8 7 26 26 C 1.46926 * 120.63167 * 270.02419 * 6 3 2 27 27 H 1.09005 * 109.47511 * 299.99851 * 1 2 3 28 28 H 1.09000 * 109.47277 * 59.99563 * 1 2 3 29 29 H 1.09002 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46987 * 240.00166 * 2 1 3 31 31 H 1.09000 * 109.47277 * 120.00437 * 2 1 3 32 32 H 1.08998 * 109.58993 * 113.84558 * 7 6 3 33 33 H 1.09002 * 109.70557 * 353.48977 * 7 6 3 34 34 H 1.08997 * 109.49979 * 185.41072 * 8 7 6 35 35 H 1.09007 * 109.49276 * 65.31777 * 8 7 6 36 36 H 1.08993 * 109.45976 * 301.35614 * 9 8 7 37 37 H 0.97001 * 119.99959 * 334.97055 * 10 9 8 38 38 H 1.07996 * 119.39045 * 0.02562 * 12 11 10 39 39 H 1.07997 * 119.72376 * 180.02562 * 14 13 12 40 40 H 0.97005 * 119.99957 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.92728 * 0.27505 * 24 11 10 42 42 H 1.09000 * 109.49739 * 58.57405 * 25 9 8 43 43 H 1.08998 * 109.49782 * 178.67643 * 25 9 8 44 44 H 1.08996 * 109.58389 * 246.15602 * 26 6 3 45 45 H 1.08998 * 109.58583 * 6.43572 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3438 1.2371 5 8 1.8385 2.3438 -1.2369 6 7 3.7843 1.5653 0.0007 7 6 4.5305 1.4996 -1.2632 8 6 5.4158 0.2495 -1.2488 9 6 6.2979 0.2683 0.0017 10 7 7.1694 -0.9092 0.0020 11 6 8.3814 -0.8812 0.6967 12 6 8.7688 0.2628 1.3913 13 7 9.9101 0.3077 2.0527 14 6 10.7350 -0.7156 2.0915 15 6 10.4237 -1.9119 1.4180 16 6 11.3102 -3.0130 1.4586 17 1 10.9357 -4.0138 1.3022 18 6 12.6727 -2.8058 1.7013 19 7 13.1902 -1.6137 1.5500 20 14 13.7526 -4.2312 2.2413 21 1 14.4112 -4.8310 1.0532 22 1 14.7878 -3.7381 3.1849 23 1 12.9172 -5.2575 2.9151 24 6 9.2118 -1.9917 0.7024 25 6 5.4145 0.2490 1.2512 26 6 4.5295 1.4994 1.2653 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.1541 2.3876 -1.3660 33 1 3.8333 1.4440 -2.0992 34 1 6.0457 0.2394 -2.1383 35 1 4.7874 -0.6412 -1.2374 36 1 6.9079 1.1715 0.0021 37 1 6.9051 -1.7084 -0.4801 38 1 8.1233 1.1286 1.3885 39 1 11.6592 -0.6376 2.6449 40 1 14.1346 -1.4700 1.7186 41 1 8.9400 -2.8908 0.1695 42 1 4.7861 -0.6415 1.2388 43 1 6.0435 0.2387 2.1414 44 1 5.1529 2.3875 1.3687 45 1 3.8298 1.4451 2.0993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164321803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:38 Heat of formation + Delta-G solvation = -47.913391 kcal Electronic energy + Delta-G solvation = -27276.806469 eV Core-core repulsion = 23420.571874 eV Total energy + Delta-G solvation = -3856.234595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.27608 -38.03315 -37.44080 -36.23015 -35.18590 -33.77714 -33.54569 -31.51816 -31.29985 -30.29457 -27.56863 -25.63356 -24.61403 -23.70528 -23.55939 -21.76011 -20.94316 -20.20063 -19.06743 -18.11777 -17.52802 -16.74603 -16.54217 -15.87911 -15.45298 -15.18111 -15.04108 -14.96193 -14.58014 -14.49410 -14.13947 -13.79452 -13.61148 -13.53045 -12.98497 -12.92518 -12.77492 -12.51467 -12.41655 -12.34517 -12.06453 -11.99114 -11.69863 -11.58690 -11.41767 -11.35316 -11.21768 -11.07514 -10.94982 -10.86475 -10.61284 -10.52507 -10.15695 -9.51626 -9.36388 -9.26509 -8.02005 -7.72970 -6.89185 -6.47519 -4.48480 -0.06715 2.31331 2.72767 3.02976 3.07053 3.09091 3.20315 3.52610 3.78965 3.84717 3.95653 4.16132 4.36005 4.39194 4.63296 4.73462 4.76274 4.90052 4.94906 5.12580 5.15616 5.20582 5.27864 5.35947 5.46394 5.52273 5.62652 5.68192 5.75967 5.82059 5.98708 6.04321 6.11749 6.30326 6.41787 6.46683 6.66970 6.80480 7.06903 7.15210 7.49073 7.60497 7.99622 8.26944 8.34321 8.39074 8.75569 8.84876 9.85990 10.08127 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031161 B = 0.002170 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.340196 B =12899.284136 C =13122.846147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.634 4.634 3 S 2.608 3.392 4 O -0.954 6.954 5 O -0.956 6.956 6 N -0.999 5.999 7 C 0.125 3.875 8 C -0.143 4.143 9 C 0.162 3.838 10 N -0.753 5.753 11 C 0.184 3.816 12 C -0.105 4.105 13 N -0.451 5.451 14 C 0.007 3.993 15 C 0.097 3.903 16 C -0.452 4.452 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.785 5.785 20 Si 0.911 3.089 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.270 4.270 25 C -0.152 4.152 26 C 0.122 3.878 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.387 0.613 38 H 0.114 0.886 39 H 0.146 0.854 40 H 0.284 0.716 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.215 1.511 -4.474 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.763 4.763 3 S 2.701 3.299 4 O -0.944 6.944 5 O -0.946 6.946 6 N -0.836 5.836 7 C -0.001 4.001 8 C -0.183 4.183 9 C 0.056 3.944 10 N -0.385 5.385 11 C 0.083 3.917 12 C -0.262 4.262 13 N -0.159 5.159 14 C -0.160 4.160 15 C 0.092 3.908 16 C -0.482 4.482 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.409 5.409 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.184 1.184 24 C -0.300 4.300 25 C -0.192 4.192 26 C -0.003 4.003 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.220 0.780 38 H 0.132 0.868 39 H 0.164 0.836 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.353 3.437 -4.010 20.061 hybrid contribution 0.466 -2.642 -0.523 2.734 sum -18.887 0.795 -4.533 19.440 Atomic orbital electron populations 1.21503 0.90636 1.05053 1.03367 1.30589 1.07058 1.26974 1.11713 1.05163 0.72990 0.77487 0.74254 1.93599 1.83213 1.72447 1.45152 1.93588 1.83278 1.72502 1.45261 1.57749 1.23984 1.89478 1.12435 1.21405 0.95568 0.98648 0.84443 1.22228 0.98581 0.98254 0.99190 1.20579 0.90376 0.90667 0.92806 1.44431 1.19797 1.15265 1.59003 1.18519 0.85293 0.95446 0.92399 1.21290 0.98215 0.96746 1.09919 1.67007 1.02472 1.30643 1.15747 1.22802 0.99514 0.90082 1.03589 1.18307 0.90707 0.93967 0.87802 1.19515 0.91703 0.94506 1.42449 0.90286 1.25976 0.98998 0.96927 0.92420 1.69807 1.14604 1.22997 1.33521 0.86254 0.79430 0.81439 0.79377 1.19526 1.19830 1.18367 1.20726 0.99843 0.97850 1.11546 1.22500 0.98660 0.97286 1.00780 1.21495 0.95659 0.99211 0.83968 0.90980 0.91031 0.90036 0.85109 0.84992 0.90348 0.88996 0.89949 0.91420 0.90238 0.77967 0.86809 0.83639 0.90475 0.88483 0.91758 0.89630 0.90387 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.92 37.15 0.37 -0.50 16 2 C -0.63 -3.96 6.90 37.15 0.26 -3.70 16 3 S 2.61 24.65 5.41 -107.50 -0.58 24.07 16 4 O -0.95 -11.92 16.72 -57.54 -0.96 -12.88 16 5 O -0.96 -11.53 16.73 -57.54 -0.96 -12.49 16 6 N -1.00 -9.18 3.22 -113.53 -0.37 -9.55 16 7 C 0.13 1.08 6.31 -3.71 -0.02 1.05 16 8 C -0.14 -1.31 5.55 -26.61 -0.15 -1.46 16 9 C 0.16 2.01 2.11 -67.89 -0.14 1.87 16 10 N -0.75 -11.77 5.25 -52.07 -0.27 -12.04 16 11 C 0.18 3.88 6.65 -83.70 -0.56 3.32 16 12 C -0.11 -2.38 10.05 -17.08 -0.17 -2.55 16 13 N -0.45 -11.58 10.33 -12.37 -0.13 -11.71 16 14 C 0.01 0.20 9.89 -16.74 -0.17 0.03 16 15 C 0.10 2.56 5.58 -106.70 -0.60 1.96 16 16 C -0.45 -11.59 9.08 -37.74 -0.34 -11.93 16 17 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 18 C 0.08 1.85 5.15 -17.34 -0.09 1.76 16 19 N -0.78 -19.82 10.96 55.55 0.61 -19.21 16 20 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 C -0.27 -6.37 9.80 -38.39 -0.38 -6.74 16 25 C -0.15 -1.70 5.60 -26.61 -0.15 -1.85 16 26 C 0.12 1.20 6.32 -3.71 -0.02 1.18 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.13 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.68 7.11 -51.93 -0.37 0.31 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.11 6.50 -51.93 -0.34 0.77 16 37 H 0.39 5.45 8.62 -40.82 -0.35 5.09 16 38 H 0.11 2.28 6.14 -52.49 -0.32 1.96 16 39 H 0.15 4.01 6.15 -52.49 -0.32 3.69 16 40 H 0.28 6.48 8.30 -40.82 -0.34 6.15 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.14 7.76 -51.93 -0.40 0.74 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.82 7.09 -51.93 -0.37 0.45 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -32.28 373.50 -10.90 -43.18 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -6.67 Total: 9.63 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.16 Total: -17.56 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.16 Total: -52.50 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.92 Total: -25.37 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 16 Polarization: 24.65 SS G_CDS: -0.58 Total: 24.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.28 -10.90 -43.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164321803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.729 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds