Wall clock time and date at job start Tue Mar 31 2020 22:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46498 * 120.00239 * 269.72138 * 3 2 1 5 5 C 1.50702 * 109.47034 * 90.00162 * 4 3 2 6 6 H 1.08002 * 119.99777 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00392 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99817 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00435 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46901 * 59.99876 * 9 7 5 11 11 H 1.48504 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47092 * 299.99902 * 9 7 5 13 13 C 1.39001 * 119.99796 * 90.00180 * 3 2 1 14 14 C 1.39139 * 119.70793 * 4.99629 * 13 3 2 15 15 C 1.38295 * 119.10018 * 179.97438 * 14 13 3 16 16 C 1.38887 * 118.50255 * 0.02562 * 15 14 13 17 17 S 1.76199 * 120.33275 * 179.97438 * 16 15 14 18 18 O 1.42101 * 106.40098 * 203.53856 * 17 16 15 19 19 O 1.42101 * 106.40320 * 336.45723 * 17 16 15 20 20 N 1.65602 * 107.21965 * 89.99747 * 17 16 15 21 21 C 1.47017 * 125.64714 * 269.68960 * 20 17 16 22 22 C 1.54314 * 107.27568 * 180.96612 * 21 20 17 23 23 C 1.55162 * 102.86287 * 22.52824 * 22 21 20 24 24 C 1.47424 * 125.64682 * 89.99811 * 20 17 16 25 25 C 1.38014 * 119.33022 * 359.97438 * 16 15 14 26 26 N 1.31973 * 120.85667 * 359.72611 * 25 16 15 27 27 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 29 29 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 30 30 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 31 31 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 32 32 H 1.08993 * 109.47575 * 210.00600 * 4 3 2 33 33 H 1.09001 * 109.46870 * 330.00556 * 4 3 2 34 34 H 0.96996 * 120.00179 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.44899 * 359.97438 * 14 13 3 36 36 H 1.08001 * 120.75165 * 179.97438 * 15 14 13 37 37 H 1.08995 * 109.88905 * 300.51227 * 21 20 17 38 38 H 1.09001 * 109.88113 * 61.68426 * 21 20 17 39 39 H 1.09000 * 110.93029 * 264.11420 * 22 21 20 40 40 H 1.09001 * 110.58994 * 140.78600 * 22 21 20 41 41 H 1.08995 * 111.00139 * 206.22729 * 23 22 21 42 42 H 1.08995 * 111.03622 * 82.39237 * 23 22 21 43 43 H 1.09004 * 110.36649 * 274.67134 * 24 20 17 44 44 H 1.08994 * 110.36742 * 36.89060 * 24 20 17 45 45 H 1.08010 * 119.57276 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2683 2.0699 -1.2687 5 6 1.0144 2.7796 -1.7106 6 1 0.1209 2.7237 -1.1065 7 6 1.0080 3.5003 -2.8859 8 7 2.0962 3.5689 -3.6212 9 14 -0.5460 4.3806 -3.4333 10 1 -0.9422 5.3728 -2.4018 11 1 -0.2927 5.0786 -4.7194 12 1 -1.6382 3.3908 -3.6134 13 6 2.2500 2.0365 1.2038 14 6 2.1166 1.3434 2.4029 15 6 2.3507 2.0075 3.5932 16 6 2.7111 3.3479 3.5446 17 16 3.0199 4.2408 5.0318 18 8 2.8129 5.6130 4.7263 19 8 2.3175 3.5594 6.0622 20 7 4.6313 4.0765 5.3767 21 6 5.2274 3.0135 6.1990 22 6 6.7460 3.2803 6.2622 23 6 6.8435 4.7971 5.9502 24 6 5.7047 4.9755 4.9153 25 6 2.8250 3.9733 2.3195 26 7 2.6013 3.3129 1.1990 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.0696 2.7967 -1.1359 33 1 2.5598 1.3420 -2.0258 34 1 2.0918 4.0762 -4.4479 35 1 1.8342 0.3010 2.4041 36 1 2.2545 1.4956 4.5393 37 1 4.8027 3.0387 7.2024 38 1 5.0425 2.0422 5.7401 39 1 7.2755 2.6968 5.5090 40 1 7.1317 3.0660 7.2589 41 1 7.8109 5.0446 5.5132 42 1 6.6567 5.3931 6.8434 43 1 6.0450 4.6817 3.9223 44 1 5.3567 6.0084 4.9062 45 1 3.1055 5.0155 2.2771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:57 Heat of formation + Delta-G solvation = -25.752158 kcal Electronic energy + Delta-G solvation = -27766.384797 eV Core-core repulsion = 23911.111185 eV Total energy + Delta-G solvation = -3855.273612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.87985 -38.47463 -37.10246 -36.57229 -35.70642 -32.87856 -32.28045 -31.09075 -30.83136 -29.63087 -29.18682 -26.81941 -23.83351 -23.59314 -22.71685 -22.28514 -21.43769 -20.60957 -19.01300 -18.00048 -17.42920 -16.78549 -16.60605 -16.35995 -16.09612 -15.15294 -14.69135 -14.63245 -14.19058 -14.03743 -13.85033 -13.78214 -13.50351 -13.20323 -12.88389 -12.82238 -12.72843 -12.61841 -12.19605 -12.02607 -11.89799 -11.68951 -11.65977 -11.55275 -11.37704 -11.28752 -11.06478 -10.96336 -10.93224 -10.74502 -10.54216 -10.31194 -10.01599 -9.58851 -9.28253 -9.17263 -8.79479 -8.47820 -7.19112 -6.09024 -4.14435 0.50712 1.32633 1.69481 3.07648 3.28307 3.33120 3.36256 3.54690 3.87184 4.14118 4.19304 4.37250 4.39721 4.63164 4.71485 4.86791 5.03766 5.07771 5.22369 5.23178 5.26331 5.34349 5.39327 5.47702 5.50801 5.60608 5.61639 5.63592 5.71454 5.72140 5.90498 5.95530 6.00232 6.03078 6.06692 6.19905 6.25111 6.33390 6.64394 6.72997 6.97321 7.32062 7.63522 7.83504 8.03038 8.14743 8.61559 8.88753 9.49876 10.97704 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015251 B = 0.003154 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.503344 B = 8876.209052 C = 9365.174306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.569 5.569 4 C 0.249 3.751 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.278 1.278 13 C 0.458 3.542 14 C -0.275 4.275 15 C 0.055 3.945 16 C -0.819 4.819 17 S 2.723 3.277 18 O -0.961 6.961 19 O -0.966 6.966 20 N -1.015 6.015 21 C 0.120 3.880 22 C -0.129 4.129 23 C -0.129 4.129 24 C 0.113 3.887 25 C 0.257 3.743 26 N -0.527 5.527 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.994 -4.490 17.987 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.271 5.271 4 C 0.130 3.870 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.204 1.204 13 C 0.218 3.782 14 C -0.301 4.301 15 C 0.029 3.971 16 C -0.915 4.915 17 S 2.816 3.184 18 O -0.951 6.951 19 O -0.956 6.956 20 N -0.853 5.853 21 C -0.005 4.005 22 C -0.168 4.168 23 C -0.168 4.168 24 C -0.012 4.012 25 C 0.089 3.911 26 N -0.244 5.244 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.392 -3.730 17.160 19.463 hybrid contribution -0.886 -0.387 -0.371 1.036 sum 7.506 -4.117 16.789 18.846 Atomic orbital electron populations 1.22224 0.95870 1.01174 1.03617 1.21494 0.94815 0.82236 1.02034 1.47617 1.62221 1.12349 1.04951 1.19451 0.97856 0.92431 0.77306 1.21336 0.97226 1.31323 1.06154 0.92449 1.24899 0.96427 0.96184 0.96393 1.69909 1.27313 1.41643 1.14499 0.86589 0.83170 0.79940 0.77905 1.20130 1.21162 1.20354 1.18738 0.84909 0.88205 0.86316 1.21443 1.14887 1.01659 0.92134 1.20734 0.87082 0.91173 0.98116 1.31005 1.31177 1.09579 1.19741 1.00817 0.70711 0.73355 0.73480 1.93551 1.83806 1.32095 1.85687 1.93527 1.70161 1.76188 1.55731 1.58742 1.24344 1.37971 1.64273 1.21685 0.93786 0.90053 0.94998 1.22634 0.94954 0.96655 1.02565 1.22759 0.98452 0.96290 0.99335 1.22074 0.87037 0.94256 0.97836 1.22185 0.85076 0.98332 0.85468 1.67568 1.19550 1.07304 1.29943 0.92496 0.93002 0.90494 0.90162 0.91508 0.93210 0.95059 0.92639 0.84822 0.84549 0.91093 0.91681 0.90536 0.90245 0.89956 0.90605 0.91289 0.89717 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.12 1.87 6.02 -4.04 -0.02 1.84 16 3 N -0.57 -11.59 2.57 -175.21 -0.45 -12.04 16 4 C 0.25 6.14 5.19 -5.19 -0.03 6.12 16 5 C -0.52 -14.13 8.94 -34.44 -0.31 -14.44 16 6 H 0.06 1.58 7.42 -52.49 -0.39 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.46 9.13 7.37 -155.03 -1.14 7.99 16 14 C -0.27 -4.46 9.27 -39.23 -0.36 -4.83 16 15 C 0.06 0.83 9.64 -39.32 -0.38 0.45 16 16 C -0.82 -12.92 5.99 -39.42 -0.24 -13.15 16 17 S 2.72 38.87 5.95 -107.50 -0.64 38.23 16 18 O -0.96 -15.98 16.62 -57.17 -0.95 -16.93 16 19 O -0.97 -15.44 16.93 -57.17 -0.97 -16.41 16 20 N -1.02 -11.20 3.70 -111.43 -0.41 -11.61 16 21 C 0.12 1.05 6.98 -3.07 -0.02 1.03 16 22 C -0.13 -0.83 6.95 -24.90 -0.17 -1.01 16 23 C -0.13 -0.87 7.08 -24.58 -0.17 -1.04 16 24 C 0.11 1.05 7.11 -2.53 -0.02 1.03 16 25 C 0.26 4.63 10.67 -17.57 -0.19 4.44 16 26 N -0.53 -11.27 9.16 -12.44 -0.11 -11.39 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.41 7.28 -51.92 -0.38 1.03 16 30 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 31 H 0.07 0.87 5.98 -51.93 -0.31 0.55 16 32 H 0.05 1.36 7.44 -51.93 -0.39 0.98 16 33 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.13 1.80 6.03 -52.48 -0.32 1.49 16 36 H 0.14 1.67 7.70 -52.49 -0.40 1.27 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.79 7.78 -51.93 -0.40 0.39 16 45 H 0.16 2.58 7.62 -52.48 -0.40 2.18 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -33.90 380.58 -11.60 -45.50 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.75 Total: -0.47 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.77 Total: -12.17 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.24 Total: -60.05 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.92 Total: -33.34 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 38.87 SS G_CDS: -0.64 Total: 38.23 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.90 -11.60 -45.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.747 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds