Wall clock time and date at job start Tue Mar 31 2020 22:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46498 * 120.00239 * 269.72138 * 3 2 1 5 5 C 1.50702 * 109.47034 * 90.00162 * 4 3 2 6 6 H 1.08002 * 119.99777 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00392 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99817 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00435 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46901 * 59.99876 * 9 7 5 11 11 H 1.48504 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47092 * 299.99902 * 9 7 5 13 13 C 1.39001 * 119.99796 * 90.00180 * 3 2 1 14 14 C 1.39139 * 119.70793 * 4.99629 * 13 3 2 15 15 C 1.38295 * 119.10018 * 179.97438 * 14 13 3 16 16 C 1.38887 * 118.50255 * 0.02562 * 15 14 13 17 17 S 1.76199 * 120.33275 * 179.97438 * 16 15 14 18 18 O 1.42101 * 106.40098 * 203.53856 * 17 16 15 19 19 O 1.42101 * 106.40320 * 336.45723 * 17 16 15 20 20 N 1.65602 * 107.21965 * 89.99747 * 17 16 15 21 21 C 1.47017 * 125.64714 * 269.68960 * 20 17 16 22 22 C 1.54314 * 107.27568 * 180.96612 * 21 20 17 23 23 C 1.55162 * 102.86287 * 22.52824 * 22 21 20 24 24 C 1.47424 * 125.64682 * 89.99811 * 20 17 16 25 25 C 1.38014 * 119.33022 * 359.97438 * 16 15 14 26 26 N 1.31973 * 120.85667 * 359.72611 * 25 16 15 27 27 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 29 29 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 30 30 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 31 31 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 32 32 H 1.08993 * 109.47575 * 210.00600 * 4 3 2 33 33 H 1.09001 * 109.46870 * 330.00556 * 4 3 2 34 34 H 0.96996 * 120.00179 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.44899 * 359.97438 * 14 13 3 36 36 H 1.08001 * 120.75165 * 179.97438 * 15 14 13 37 37 H 1.08995 * 109.88905 * 300.51227 * 21 20 17 38 38 H 1.09001 * 109.88113 * 61.68426 * 21 20 17 39 39 H 1.09000 * 110.93029 * 264.11420 * 22 21 20 40 40 H 1.09001 * 110.58994 * 140.78600 * 22 21 20 41 41 H 1.08995 * 111.00139 * 206.22729 * 23 22 21 42 42 H 1.08995 * 111.03622 * 82.39237 * 23 22 21 43 43 H 1.09004 * 110.36649 * 274.67134 * 24 20 17 44 44 H 1.08994 * 110.36742 * 36.89060 * 24 20 17 45 45 H 1.08010 * 119.57276 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2683 2.0699 -1.2687 5 6 1.0144 2.7796 -1.7106 6 1 0.1209 2.7237 -1.1065 7 6 1.0080 3.5003 -2.8859 8 7 2.0962 3.5689 -3.6212 9 14 -0.5460 4.3806 -3.4333 10 1 -0.9422 5.3728 -2.4018 11 1 -0.2927 5.0786 -4.7194 12 1 -1.6382 3.3908 -3.6134 13 6 2.2500 2.0365 1.2038 14 6 2.1166 1.3434 2.4029 15 6 2.3507 2.0075 3.5932 16 6 2.7111 3.3479 3.5446 17 16 3.0199 4.2408 5.0318 18 8 2.8129 5.6130 4.7263 19 8 2.3175 3.5594 6.0622 20 7 4.6313 4.0765 5.3767 21 6 5.2274 3.0135 6.1990 22 6 6.7460 3.2803 6.2622 23 6 6.8435 4.7971 5.9502 24 6 5.7047 4.9755 4.9153 25 6 2.8250 3.9733 2.3195 26 7 2.6013 3.3129 1.1990 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.0696 2.7967 -1.1359 33 1 2.5598 1.3420 -2.0258 34 1 2.0918 4.0762 -4.4479 35 1 1.8342 0.3010 2.4041 36 1 2.2545 1.4956 4.5393 37 1 4.8027 3.0387 7.2024 38 1 5.0425 2.0422 5.7401 39 1 7.2755 2.6968 5.5090 40 1 7.1317 3.0660 7.2589 41 1 7.8109 5.0446 5.5132 42 1 6.6567 5.3931 6.8434 43 1 6.0450 4.6817 3.9223 44 1 5.3567 6.0084 4.9062 45 1 3.1055 5.0155 2.2771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:56 Heat of formation + Delta-G solvation = -47.927078 kcal Electronic energy + Delta-G solvation = -27767.346374 eV Core-core repulsion = 23911.111185 eV Total energy + Delta-G solvation = -3856.235189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28590 -39.17208 -38.34502 -38.04615 -36.95462 -34.89349 -33.67696 -32.15215 -31.80278 -31.25779 -29.84335 -28.59193 -25.37753 -25.09317 -23.79730 -23.49398 -22.09402 -21.97276 -20.08771 -19.11382 -18.67611 -18.57993 -17.97722 -17.84370 -16.98297 -16.61505 -16.19835 -15.96250 -15.69940 -15.32734 -14.83060 -14.64066 -14.50200 -14.41537 -14.19566 -14.16347 -14.03002 -13.83137 -13.50206 -13.30660 -13.25855 -13.15025 -13.02801 -12.82992 -12.65847 -12.56101 -12.23645 -12.17373 -12.09099 -11.98985 -11.88910 -11.68669 -11.47882 -11.25874 -10.76715 -10.62815 -10.32313 -9.92381 -8.74540 -8.16079 -6.32794 -0.64039 -0.03410 0.37893 1.33826 1.37064 1.43867 1.98842 2.13792 2.37997 2.66000 2.88176 3.08945 3.17077 3.50722 3.69263 3.82660 3.86730 3.99099 4.14973 4.17552 4.22836 4.37917 4.43253 4.49993 4.64805 4.65402 4.72614 4.75667 4.76559 4.94922 4.95082 4.96482 5.05020 5.07487 5.09397 5.11756 5.21079 5.23665 5.40687 5.43857 5.53115 5.55522 5.67905 6.02773 6.12618 6.43194 6.76117 7.21003 7.36038 8.85188 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015251 B = 0.003154 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.503344 B = 8876.209052 C = 9365.174306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.585 5.585 4 C 0.269 3.731 5 C -0.526 4.526 6 H 0.047 0.953 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.955 3.045 10 H -0.281 1.281 11 H -0.279 1.279 12 H -0.266 1.266 13 C 0.432 3.568 14 C -0.264 4.264 15 C 0.057 3.943 16 C -0.810 4.810 17 S 2.745 3.255 18 O -0.988 6.988 19 O -0.979 6.979 20 N -1.012 6.012 21 C 0.106 3.894 22 C -0.123 4.123 23 C -0.124 4.124 24 C 0.100 3.900 25 C 0.238 3.762 26 N -0.577 5.577 27 H 0.094 0.906 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.014 0.986 33 H 0.018 0.982 34 H 0.266 0.734 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.262 -5.932 20.418 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.289 5.289 4 C 0.148 3.852 5 C -0.564 4.564 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.566 5.566 9 Si 0.781 3.219 10 H -0.207 1.207 11 H -0.204 1.204 12 H -0.191 1.191 13 C 0.194 3.806 14 C -0.290 4.290 15 C 0.031 3.969 16 C -0.904 4.904 17 S 2.837 3.163 18 O -0.979 6.979 19 O -0.969 6.969 20 N -0.853 5.853 21 C -0.018 4.018 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.024 4.024 25 C 0.073 3.927 26 N -0.295 5.295 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.032 0.968 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.184 0.816 36 H 0.190 0.810 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.647 -5.185 19.619 22.058 hybrid contribution -0.876 0.086 -0.958 1.301 sum 7.770 -5.100 18.661 20.847 Atomic orbital electron populations 1.22148 0.95640 1.02861 1.01429 1.21769 0.94950 0.80215 1.03954 1.47466 1.64062 1.13786 1.03589 1.18819 0.95696 0.91410 0.79295 1.21566 0.97670 1.31260 1.05942 0.93451 1.25676 0.99235 0.97019 0.96662 1.70015 1.29062 1.42599 1.14936 0.85657 0.80025 0.78837 0.77404 1.20679 1.20359 1.19115 1.19104 0.85965 0.88263 0.87282 1.21715 1.13538 1.02952 0.90783 1.21211 0.85648 0.90791 0.99229 1.31338 1.29337 1.10177 1.19546 1.00068 0.71356 0.72330 0.72552 1.93515 1.84832 1.33627 1.85883 1.93502 1.71435 1.76302 1.55677 1.58500 1.23473 1.39096 1.64202 1.22021 0.95386 0.89615 0.94808 1.22658 0.93161 0.96279 1.04050 1.22784 0.98031 0.96751 0.98710 1.22329 0.87455 0.93633 0.99018 1.22334 0.85826 0.98752 0.85784 1.67450 1.21117 1.08926 1.31995 0.88782 0.93551 0.94189 0.89968 0.87779 0.96814 0.96449 0.92555 0.81567 0.80980 0.90634 0.90876 0.89933 0.88140 0.88140 0.90092 0.91132 0.90339 0.81719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 10.24 71.98 0.74 -4.09 16 2 C 0.11 3.45 6.02 86.38 0.52 3.96 16 3 N -0.58 -24.17 2.57 -708.23 -1.82 -26.00 16 4 C 0.27 13.94 5.19 85.63 0.44 14.39 16 5 C -0.53 -29.53 8.94 25.60 0.23 -29.30 16 6 H 0.05 2.70 7.42 -2.91 -0.02 2.68 16 7 C 0.01 0.74 5.46 84.65 0.46 1.20 16 8 N -0.93 -54.99 13.29 21.45 0.28 -54.70 16 9 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.43 17.29 7.37 133.07 0.98 18.27 16 14 C -0.26 -8.02 9.27 22.50 0.21 -7.81 16 15 C 0.06 1.58 9.64 22.44 0.22 1.79 16 16 C -0.81 -24.85 5.99 22.37 0.13 -24.72 16 17 S 2.74 75.39 5.95 -56.49 -0.34 75.05 16 18 O -0.99 -32.80 16.62 -128.00 -2.13 -34.93 16 19 O -0.98 -29.42 16.93 -128.00 -2.17 -31.59 16 20 N -1.01 -20.67 3.70 -506.46 -1.87 -22.54 16 21 C 0.11 1.58 6.98 86.73 0.61 2.18 16 22 C -0.12 -1.19 6.95 31.78 0.22 -0.97 16 23 C -0.12 -1.34 7.08 31.99 0.23 -1.11 16 24 C 0.10 1.73 7.11 86.86 0.62 2.34 16 25 C 0.24 8.79 10.67 84.62 0.90 9.70 16 26 N -0.58 -25.57 9.16 -193.27 -1.77 -27.34 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.47 7.28 -2.38 -0.02 1.45 16 30 H 0.08 2.44 7.89 -2.39 -0.02 2.42 16 31 H 0.10 2.36 5.98 -2.39 -0.01 2.35 16 32 H 0.01 0.80 7.44 -2.39 -0.02 0.79 16 33 H 0.02 0.94 7.89 -2.39 -0.02 0.92 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.16 16 35 H 0.17 3.83 6.03 -2.91 -0.02 3.81 16 36 H 0.17 3.52 7.70 -2.91 -0.02 3.50 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.43 7.78 -2.39 -0.02 1.42 16 45 H 0.17 5.62 7.62 -2.91 -0.02 5.59 16 Total: -1.00 -76.27 380.58 -0.29 -76.56 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.99 Total: 12.43 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 6.50 Total: -14.16 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -5.18 Total: -130.58 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -4.29 Total: -66.51 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 75.39 SS G_CDS: -0.34 Total: 75.05 kcal Total: -76.27 -0.29 -76.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.636 kcal (2) G-P(sol) polarization free energy of solvation -76.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds