Wall clock time and date at job start Tue Mar 31 2020 22:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46933 * 2 1 4 4 S 1.65600 * 119.99988 * 165.00383 * 3 2 1 5 5 O 1.42103 * 106.39954 * 311.46160 * 4 3 2 6 6 O 1.42100 * 106.39965 * 178.53976 * 4 3 2 7 7 C 1.76195 * 107.21885 * 64.99800 * 4 3 2 8 8 C 1.38888 * 120.33907 * 270.02195 * 7 4 3 9 9 C 1.38294 * 118.50426 * 179.97438 * 8 7 4 10 10 C 1.39136 * 119.10285 * 359.97438 * 9 8 7 11 11 N 1.38996 * 119.70688 * 180.02562 * 10 9 8 12 12 C 1.46846 * 111.00373 * 55.77161 * 11 10 9 13 13 C 1.53034 * 109.52399 * 185.84188 * 12 11 10 14 14 C 1.53120 * 109.27640 * 300.81360 * 13 12 11 15 15 C 1.53119 * 109.15773 * 57.65777 * 14 13 12 16 16 H 1.09000 * 109.50151 * 62.28974 * 15 14 13 17 17 C 1.50703 * 109.50179 * 182.40297 * 15 14 13 18 18 H 1.07997 * 119.99850 * 119.80427 * 17 15 14 19 19 C 1.37875 * 119.99984 * 299.80072 * 17 15 14 20 20 N 1.31512 * 120.00185 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00007 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46952 * 60.00752 * 21 19 17 23 23 H 1.48505 * 109.46901 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47334 * 300.00412 * 21 19 17 25 25 C 1.46849 * 111.00015 * 179.97438 * 11 10 9 26 26 N 1.32398 * 120.58424 * 0.02562 * 10 9 8 27 27 C 1.31974 * 121.62437 * 359.97438 * 26 10 9 28 28 H 1.08998 * 109.47032 * 299.99664 * 1 2 3 29 29 H 1.08997 * 109.47371 * 60.00079 * 1 2 3 30 30 H 1.09003 * 109.46715 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47032 * 240.00336 * 2 1 3 32 32 H 1.08997 * 109.47371 * 119.99921 * 2 1 3 33 33 H 0.96997 * 120.00139 * 345.00024 * 3 2 1 34 34 H 1.08000 * 120.74262 * 359.95932 * 8 7 4 35 35 H 1.08004 * 120.44656 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.45505 * 305.85593 * 12 11 10 37 37 H 1.09001 * 109.46141 * 65.81678 * 12 11 10 38 38 H 1.09007 * 109.49976 * 180.88029 * 13 12 11 39 39 H 1.08998 * 109.54173 * 60.77648 * 13 12 11 40 40 H 1.08999 * 109.52769 * 297.75192 * 14 13 12 41 41 H 1.09000 * 109.52472 * 177.56132 * 14 13 12 42 42 H 0.97001 * 120.00236 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.46354 * 294.17553 * 25 11 10 44 44 H 1.08998 * 109.46296 * 54.15384 * 25 11 10 45 45 H 1.08002 * 119.56928 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7002 0.3711 5 8 3.8849 0.9833 1.5646 6 8 3.7650 3.1065 0.2511 7 6 4.5894 0.9738 -0.8933 8 6 5.0403 -0.3337 -0.7671 9 6 5.8135 -0.8661 -1.7825 10 6 6.1115 -0.0786 -2.8902 11 7 6.8873 -0.6012 -3.9183 12 6 6.2994 -1.8401 -4.4436 13 6 7.2500 -2.4627 -5.4687 14 6 7.4889 -1.4666 -6.6068 15 6 8.0559 -0.1678 -6.0270 16 1 9.0175 -0.3693 -5.5550 17 6 8.2387 0.8392 -7.1332 18 1 7.7130 1.7819 -7.0975 19 6 9.0772 0.5571 -8.1907 20 7 9.7171 -0.5911 -8.2343 21 14 9.3033 1.8050 -9.5622 22 1 9.8485 3.0663 -8.9989 23 1 10.2481 1.2645 -10.5724 24 1 7.9929 2.0761 -10.2058 25 6 7.0819 0.3882 -4.9858 26 7 5.6627 1.1642 -2.9735 27 6 4.9229 1.6982 -2.0199 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.4150 2.1090 -0.2174 34 1 4.7927 -0.9213 0.1046 35 1 6.1811 -1.8796 -1.7166 36 1 6.1385 -2.5413 -3.6247 37 1 5.3460 -1.6155 -4.9218 38 1 6.8064 -3.3740 -5.8698 39 1 8.1990 -2.7008 -4.9883 40 1 6.5462 -1.2586 -7.1128 41 1 8.1993 -1.8890 -7.3174 42 1 10.3067 -0.7897 -8.9785 43 1 6.1249 0.6023 -5.4615 44 1 7.4895 1.3055 -4.5609 45 1 4.5748 2.7154 -2.1220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166741650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:43 Heat of formation + Delta-G solvation = -35.981786 kcal Electronic energy + Delta-G solvation = -27457.347513 eV Core-core repulsion = 23601.630312 eV Total energy + Delta-G solvation = -3855.717202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.66461 -38.06354 -37.43986 -36.22280 -36.01464 -34.14513 -32.80034 -32.02812 -30.20913 -30.10937 -29.58096 -25.31129 -24.55315 -23.81466 -23.24727 -21.95699 -21.42904 -19.84234 -18.89727 -18.27047 -17.69449 -17.16758 -16.84887 -16.19563 -15.98603 -15.18037 -15.02192 -14.84852 -14.62181 -14.54740 -14.01808 -13.67818 -13.54412 -13.26483 -13.22027 -12.90705 -12.55551 -12.49449 -12.37097 -12.32055 -12.20196 -12.07658 -11.93361 -11.80661 -11.35238 -10.99819 -10.90470 -10.76922 -10.33995 -10.30619 -10.02060 -9.94988 -9.88102 -9.58046 -9.46460 -9.24509 -8.82552 -8.38237 -8.06724 -6.04720 -4.10778 0.20679 0.66097 1.18345 2.79238 3.29877 3.34274 3.35090 3.38018 3.63103 3.82188 4.13117 4.36312 4.45453 4.51463 4.67353 4.70191 4.84775 4.99968 5.03663 5.16771 5.24850 5.29974 5.43422 5.47588 5.54108 5.57217 5.63287 5.70886 5.72846 5.73497 5.96343 6.23142 6.28166 6.40415 6.43062 6.59582 6.60635 6.78637 6.86479 7.11951 7.24929 7.48922 7.67289 7.91122 7.93037 8.06212 8.37117 8.92333 9.54080 11.01731 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.002586 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.606739 B =10824.965380 C =11345.837709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.111 3.889 3 N -1.120 6.120 4 S 2.709 3.291 5 O -0.961 6.961 6 O -0.960 6.960 7 C -0.781 4.781 8 C 0.039 3.961 9 C -0.217 4.217 10 C 0.378 3.622 11 N -0.473 5.473 12 C 0.068 3.932 13 C -0.120 4.120 14 C -0.115 4.115 15 C 0.051 3.949 16 H 0.035 0.965 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.064 3.936 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.074 3.926 26 N -0.528 5.528 27 C 0.236 3.764 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.418 0.582 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.096 0.904 42 H 0.261 0.739 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.245 -3.090 15.547 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.015 4.015 3 N -0.880 5.880 4 S 2.798 3.202 5 O -0.951 6.951 6 O -0.951 6.951 7 C -0.873 4.873 8 C 0.013 3.987 9 C -0.241 4.241 10 C 0.145 3.855 11 N -0.186 5.186 12 C -0.057 4.057 13 C -0.158 4.158 14 C -0.153 4.153 15 C 0.032 3.968 16 H 0.053 0.947 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.051 4.051 26 N -0.243 5.243 27 C 0.073 3.927 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.252 0.748 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.933 -2.626 15.520 22.397 hybrid contribution -0.646 0.259 -1.087 1.291 sum -16.579 -2.368 14.433 22.109 Atomic orbital electron populations 1.21957 0.94013 1.03062 1.02807 1.21274 0.96508 0.81506 1.02236 1.55609 1.28917 1.14777 1.88718 1.01388 0.72091 0.73093 0.73629 1.93568 1.83896 1.74670 1.42962 1.93594 1.85227 1.29212 1.87023 1.31407 1.26759 1.08082 1.21082 1.21040 0.89652 0.91711 0.96333 1.21655 1.04790 1.02437 0.95201 1.20546 0.83490 0.88974 0.92512 1.58987 1.39257 1.08318 1.12080 1.22274 0.96817 0.88612 0.98012 1.21758 0.98539 0.98610 0.96890 1.21734 1.00557 0.96358 0.96650 1.18769 0.93443 0.92925 0.91656 0.94733 1.21039 1.26595 1.02122 1.05583 0.92577 1.24924 0.95370 0.95388 0.98083 1.69863 1.29050 1.22218 1.31687 0.86639 0.77959 0.81638 0.81654 1.20206 1.21298 1.20294 1.22416 1.00315 0.92715 0.89630 1.67939 1.13371 1.13236 1.29759 1.22367 0.87091 0.97916 0.85277 0.91750 0.91850 0.90942 0.91706 0.90148 0.74760 0.83525 0.83820 0.91019 0.93780 0.92367 0.91583 0.94683 0.88570 0.92897 0.93920 0.90616 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 10.05 37.16 0.37 -0.32 16 2 C 0.11 0.66 6.94 -4.04 -0.03 0.63 16 3 N -1.12 -7.88 6.00 -10.61 -0.06 -7.95 16 4 S 2.71 28.33 5.75 -107.50 -0.62 27.72 16 5 O -0.96 -12.23 16.83 -57.17 -0.96 -13.19 16 6 O -0.96 -12.59 17.30 -57.17 -0.99 -13.58 16 7 C -0.78 -9.28 5.96 -39.42 -0.24 -9.51 16 8 C 0.04 0.45 9.64 -39.32 -0.38 0.07 16 9 C -0.22 -2.84 9.18 -39.23 -0.36 -3.20 16 10 C 0.38 6.24 6.41 -155.03 -0.99 5.24 16 11 N -0.47 -8.60 4.68 -173.24 -0.81 -9.41 16 12 C 0.07 1.07 5.25 -3.84 -0.02 1.05 16 13 C -0.12 -2.10 6.09 -26.65 -0.16 -2.27 16 14 C -0.11 -2.55 5.03 -26.61 -0.13 -2.69 16 15 C 0.05 1.24 2.26 -91.69 -0.21 1.03 16 16 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.51 -13.86 8.56 -34.44 -0.29 -14.16 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 20 N -0.89 -24.75 11.36 55.43 0.63 -24.12 16 21 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.07 1.58 3.87 -3.84 -0.01 1.57 16 26 N -0.53 -8.93 8.68 -12.44 -0.11 -9.04 16 27 C 0.24 3.27 10.68 -17.57 -0.19 3.08 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.47 7.75 -51.93 -0.40 0.06 16 33 H 0.42 2.18 8.65 -34.47 -0.30 1.88 16 34 H 0.15 1.26 7.70 -52.49 -0.40 0.86 16 35 H 0.14 1.58 7.14 -52.48 -0.37 1.21 16 36 H 0.07 0.91 6.67 -51.93 -0.35 0.57 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 2.41 6.16 -51.93 -0.32 2.09 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.04 0.93 8.11 -51.93 -0.42 0.50 16 44 H 0.08 1.70 7.70 -51.93 -0.40 1.30 16 45 H 0.17 1.96 7.62 -52.49 -0.40 1.56 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -32.94 373.53 -11.76 -44.70 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.71 Total: 1.09 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.74 Total: -17.85 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.35 Total: -50.52 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.95 Total: -26.78 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 28.33 SS G_CDS: -0.62 Total: 27.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.94 -11.76 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.718 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds