Wall clock time and date at job start Tue Mar 31 2020 22:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46933 * 2 1 4 4 S 1.65600 * 119.99988 * 165.00383 * 3 2 1 5 5 O 1.42103 * 106.39954 * 311.46160 * 4 3 2 6 6 O 1.42100 * 106.39965 * 178.53976 * 4 3 2 7 7 C 1.76195 * 107.21885 * 64.99800 * 4 3 2 8 8 C 1.38888 * 120.33907 * 270.02195 * 7 4 3 9 9 C 1.38294 * 118.50426 * 179.97438 * 8 7 4 10 10 C 1.39136 * 119.10285 * 359.97438 * 9 8 7 11 11 N 1.38996 * 119.70688 * 180.02562 * 10 9 8 12 12 C 1.46846 * 111.00373 * 55.77161 * 11 10 9 13 13 C 1.53034 * 109.52399 * 185.84188 * 12 11 10 14 14 C 1.53120 * 109.27640 * 300.81360 * 13 12 11 15 15 C 1.53119 * 109.15773 * 57.65777 * 14 13 12 16 16 H 1.09000 * 109.50151 * 62.28974 * 15 14 13 17 17 C 1.50703 * 109.50179 * 182.40297 * 15 14 13 18 18 H 1.07997 * 119.99850 * 119.80427 * 17 15 14 19 19 C 1.37875 * 119.99984 * 299.80072 * 17 15 14 20 20 N 1.31512 * 120.00185 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00007 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46952 * 60.00752 * 21 19 17 23 23 H 1.48505 * 109.46901 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47334 * 300.00412 * 21 19 17 25 25 C 1.46849 * 111.00015 * 179.97438 * 11 10 9 26 26 N 1.32398 * 120.58424 * 0.02562 * 10 9 8 27 27 C 1.31974 * 121.62437 * 359.97438 * 26 10 9 28 28 H 1.08998 * 109.47032 * 299.99664 * 1 2 3 29 29 H 1.08997 * 109.47371 * 60.00079 * 1 2 3 30 30 H 1.09003 * 109.46715 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47032 * 240.00336 * 2 1 3 32 32 H 1.08997 * 109.47371 * 119.99921 * 2 1 3 33 33 H 0.96997 * 120.00139 * 345.00024 * 3 2 1 34 34 H 1.08000 * 120.74262 * 359.95932 * 8 7 4 35 35 H 1.08004 * 120.44656 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.45505 * 305.85593 * 12 11 10 37 37 H 1.09001 * 109.46141 * 65.81678 * 12 11 10 38 38 H 1.09007 * 109.49976 * 180.88029 * 13 12 11 39 39 H 1.08998 * 109.54173 * 60.77648 * 13 12 11 40 40 H 1.08999 * 109.52769 * 297.75192 * 14 13 12 41 41 H 1.09000 * 109.52472 * 177.56132 * 14 13 12 42 42 H 0.97001 * 120.00236 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.46354 * 294.17553 * 25 11 10 44 44 H 1.08998 * 109.46296 * 54.15384 * 25 11 10 45 45 H 1.08002 * 119.56928 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7002 0.3711 5 8 3.8849 0.9833 1.5646 6 8 3.7650 3.1065 0.2511 7 6 4.5894 0.9738 -0.8933 8 6 5.0403 -0.3337 -0.7671 9 6 5.8135 -0.8661 -1.7825 10 6 6.1115 -0.0786 -2.8902 11 7 6.8873 -0.6012 -3.9183 12 6 6.2994 -1.8401 -4.4436 13 6 7.2500 -2.4627 -5.4687 14 6 7.4889 -1.4666 -6.6068 15 6 8.0559 -0.1678 -6.0270 16 1 9.0175 -0.3693 -5.5550 17 6 8.2387 0.8392 -7.1332 18 1 7.7130 1.7819 -7.0975 19 6 9.0772 0.5571 -8.1907 20 7 9.7171 -0.5911 -8.2343 21 14 9.3033 1.8050 -9.5622 22 1 9.8485 3.0663 -8.9989 23 1 10.2481 1.2645 -10.5724 24 1 7.9929 2.0761 -10.2058 25 6 7.0819 0.3882 -4.9858 26 7 5.6627 1.1642 -2.9735 27 6 4.9229 1.6982 -2.0199 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.4150 2.1090 -0.2174 34 1 4.7927 -0.9213 0.1046 35 1 6.1811 -1.8796 -1.7166 36 1 6.1385 -2.5413 -3.6247 37 1 5.3460 -1.6155 -4.9218 38 1 6.8064 -3.3740 -5.8698 39 1 8.1990 -2.7008 -4.9883 40 1 6.5462 -1.2586 -7.1128 41 1 8.1993 -1.8890 -7.3174 42 1 10.3067 -0.7897 -8.9785 43 1 6.1249 0.6023 -5.4615 44 1 7.4895 1.3055 -4.5609 45 1 4.5748 2.7154 -2.1220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166741650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:42 Heat of formation + Delta-G solvation = -59.765888 kcal Electronic energy + Delta-G solvation = -27458.378869 eV Core-core repulsion = 23601.630312 eV Total energy + Delta-G solvation = -3856.748558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84999 -39.46006 -38.37890 -36.98614 -36.74710 -35.84901 -34.07323 -33.52376 -31.83753 -30.89428 -30.56579 -27.14781 -25.91810 -25.02209 -23.72280 -23.26842 -22.95561 -20.68742 -20.54409 -19.23413 -18.86033 -18.34658 -17.90823 -17.70935 -16.96818 -16.57469 -16.17601 -15.80210 -15.72086 -15.58896 -15.32394 -15.02804 -14.75426 -14.40140 -14.30560 -14.18947 -14.08909 -13.99572 -13.45061 -13.26774 -13.16346 -12.88109 -12.75603 -12.73199 -12.60037 -12.55706 -12.47526 -12.22022 -11.93140 -11.84333 -11.61602 -11.33037 -11.12178 -10.95333 -10.78518 -10.60083 -10.41675 -10.38500 -9.35481 -8.12685 -6.26328 -0.66992 -0.38337 0.17392 1.39920 1.41000 1.48726 2.00687 2.27291 2.40978 2.63210 2.76635 3.14827 3.25013 3.30926 3.77250 3.88023 4.00760 4.08037 4.08770 4.11123 4.29682 4.32763 4.46295 4.51837 4.56358 4.61974 4.64436 4.69581 4.75122 4.77584 4.90694 4.97415 5.05962 5.13492 5.18525 5.23261 5.30145 5.39350 5.46409 5.59348 5.65485 5.94877 6.09163 6.10854 6.11363 6.33850 6.80066 6.85124 7.41452 8.92099 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.002586 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.606739 B =10824.965380 C =11345.837709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.100 3.900 3 N -1.107 6.107 4 S 2.734 3.266 5 O -0.978 6.978 6 O -0.988 6.988 7 C -0.770 4.770 8 C 0.046 3.954 9 C -0.209 4.209 10 C 0.349 3.651 11 N -0.485 5.485 12 C 0.069 3.931 13 C -0.111 4.111 14 C -0.108 4.108 15 C 0.050 3.950 16 H -0.002 1.002 17 C -0.539 4.539 18 H 0.047 0.953 19 C 0.019 3.981 20 N -0.912 5.912 21 Si 0.953 3.047 22 H -0.275 1.275 23 H -0.281 1.281 24 H -0.271 1.271 25 C 0.099 3.901 26 N -0.565 5.565 27 C 0.219 3.781 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.428 0.572 34 H 0.183 0.817 35 H 0.171 0.829 36 H 0.114 0.886 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.262 0.738 43 H 0.031 0.969 44 H 0.052 0.948 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.344 -4.230 17.198 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.871 5.871 4 S 2.822 3.178 5 O -0.968 6.968 6 O -0.978 6.978 7 C -0.860 4.860 8 C 0.020 3.980 9 C -0.233 4.233 10 C 0.117 3.883 11 N -0.200 5.200 12 C -0.055 4.055 13 C -0.149 4.149 14 C -0.146 4.146 15 C 0.032 3.968 16 H 0.016 0.984 17 C -0.578 4.578 18 H 0.066 0.934 19 C -0.181 4.181 20 N -0.551 5.551 21 Si 0.779 3.221 22 H -0.200 1.200 23 H -0.206 1.206 24 H -0.196 1.196 25 C -0.028 4.028 26 N -0.280 5.280 27 C 0.058 3.942 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.265 0.735 34 H 0.200 0.800 35 H 0.188 0.812 36 H 0.132 0.868 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.047 -3.759 17.185 25.202 hybrid contribution -0.103 0.642 -1.484 1.620 sum -18.150 -3.117 15.702 24.201 Atomic orbital electron populations 1.21967 0.92738 1.03967 1.03048 1.21539 0.97660 0.80465 1.02870 1.55331 1.27385 1.16019 1.88354 1.00589 0.72436 0.71941 0.72830 1.93547 1.84657 1.74905 1.43669 1.93557 1.85991 1.31024 1.87232 1.31697 1.25909 1.08219 1.20179 1.21503 0.88197 0.91553 0.96768 1.21898 1.04176 1.03185 0.94002 1.20675 0.85012 0.89590 0.93009 1.59019 1.41470 1.08110 1.11365 1.22361 0.95814 0.88416 0.98896 1.21647 0.99212 0.98438 0.95596 1.21517 0.98919 0.96437 0.97747 1.18666 0.92657 0.93765 0.91752 0.98417 1.21398 1.26941 1.02560 1.06874 0.93426 1.25657 0.95095 0.97126 1.00193 1.69994 1.29343 1.23517 1.32268 0.85693 0.78133 0.79355 0.78969 1.20030 1.20582 1.19587 1.21840 0.98431 0.92724 0.89787 1.67819 1.14523 1.14045 1.31624 1.22604 0.87160 0.98774 0.85684 0.91570 0.91606 0.89709 0.90959 0.89697 0.73507 0.79991 0.81201 0.86784 0.93778 0.89310 0.92253 0.95414 0.91706 0.92858 0.95098 0.92909 0.80382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 10.05 71.98 0.72 -0.19 16 2 C 0.10 0.87 6.94 86.38 0.60 1.47 16 3 N -1.11 -12.76 6.00 -187.48 -1.12 -13.89 16 4 S 2.73 51.40 5.75 -56.49 -0.32 51.07 16 5 O -0.98 -22.29 16.83 -128.00 -2.15 -24.44 16 6 O -0.99 -24.67 17.30 -128.00 -2.21 -26.89 16 7 C -0.77 -16.68 5.96 22.37 0.13 -16.55 16 8 C 0.05 0.89 9.64 22.44 0.22 1.11 16 9 C -0.21 -4.88 9.18 22.50 0.21 -4.67 16 10 C 0.35 11.22 6.41 133.07 0.85 12.07 16 11 N -0.49 -17.61 4.68 -702.00 -3.28 -20.89 16 12 C 0.07 2.07 5.25 86.32 0.45 2.52 16 13 C -0.11 -3.81 6.09 30.65 0.19 -3.62 16 14 C -0.11 -4.95 5.03 30.67 0.15 -4.80 16 15 C 0.05 2.58 2.26 -11.49 -0.03 2.55 16 16 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 17 C -0.54 -30.38 8.56 25.60 0.22 -30.16 16 18 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 19 C 0.02 1.04 5.31 84.65 0.45 1.48 16 20 N -0.91 -52.40 11.36 21.45 0.24 -52.16 16 21 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.10 4.39 3.87 86.32 0.33 4.73 16 26 N -0.56 -19.22 8.68 -193.27 -1.68 -20.89 16 27 C 0.22 5.93 10.68 84.62 0.90 6.84 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.69 7.75 -2.39 -0.02 0.68 16 33 H 0.43 3.46 8.65 -96.75 -0.84 2.62 16 34 H 0.18 2.26 7.70 -2.91 -0.02 2.24 16 35 H 0.17 2.99 7.14 -2.91 -0.02 2.97 16 36 H 0.11 2.46 6.67 -2.39 -0.02 2.44 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 3.37 6.16 -2.39 -0.01 3.36 16 42 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.03 1.41 8.11 -2.39 -0.02 1.39 16 44 H 0.05 2.52 7.70 -2.39 -0.02 2.50 16 45 H 0.18 4.17 7.62 -2.91 -0.02 4.15 16 Total: -1.00 -74.43 373.53 -2.94 -77.37 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.16 Total: 11.88 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 5.41 Total: -27.21 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -5.84 Total: -107.83 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -4.37 Total: -51.33 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 51.40 SS G_CDS: -0.32 Total: 51.07 kcal Total: -74.43 -2.94 -77.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.607 kcal (2) G-P(sol) polarization free energy of solvation -74.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds