Wall clock time and date at job start Tue Mar 31 2020 22:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21211 * 120.00082 * 2 1 4 4 C 1.47541 * 120.00256 * 179.97438 * 2 1 3 5 5 C 1.40050 * 120.91326 * 359.97438 * 4 2 1 6 6 C 1.38475 * 119.15615 * 180.02562 * 5 4 2 7 7 N 1.31466 * 121.06235 * 0.03042 * 6 5 4 8 8 C 1.32669 * 122.02726 * 359.67521 * 7 6 5 9 9 C 1.48168 * 119.64417 * 180.31557 * 8 7 6 10 10 O 1.21523 * 119.99841 * 173.40392 * 9 8 7 11 11 N 1.34772 * 120.00140 * 353.40907 * 9 8 7 12 12 C 1.46495 * 119.99828 * 2.95414 * 11 9 8 13 13 C 1.50705 * 109.46778 * 82.69329 * 12 11 9 14 14 H 1.07998 * 120.00234 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99927 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99700 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99783 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46967 * 90.00525 * 17 15 13 19 19 H 1.48501 * 109.46589 * 210.00073 * 17 15 13 20 20 H 1.48497 * 109.47256 * 330.00222 * 17 15 13 21 21 C 1.46501 * 119.99868 * 182.96024 * 11 9 8 22 22 C 1.50698 * 109.47240 * 89.99883 * 21 11 9 23 23 C 1.38677 * 120.41979 * 269.72076 * 22 21 11 24 24 C 1.38623 * 118.42471 * 179.78154 * 23 22 21 25 25 C 1.38230 * 119.15765 * 0.51189 * 24 23 22 26 26 N 1.31852 * 120.76464 * 359.72826 * 25 24 23 27 27 C 1.31892 * 121.72736 * 359.97438 * 26 25 24 28 28 C 1.39223 * 120.70960 * 0.58594 * 8 7 6 29 29 H 1.09003 * 109.46980 * 240.00002 * 1 2 3 30 30 H 1.08995 * 109.46909 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46568 * 120.00390 * 1 2 3 32 32 H 1.07999 * 120.42145 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.46816 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47075 * 202.68540 * 12 11 9 35 35 H 1.09000 * 109.47821 * 322.69466 * 12 11 9 36 36 H 0.97006 * 119.99383 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.46683 * 209.99614 * 21 11 9 38 38 H 1.08993 * 109.47213 * 329.99874 * 21 11 9 39 39 H 1.08007 * 120.78738 * 0.02562 * 23 22 21 40 40 H 1.07998 * 120.42370 * 180.21921 * 24 23 22 41 41 H 1.07998 * 119.61931 * 179.74672 * 25 24 23 42 42 H 1.08001 * 119.61809 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.56504 * 179.73329 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0497 0.0000 4 6 2.2447 -1.2777 0.0006 5 6 1.5640 -2.5016 0.0017 6 6 2.2928 -3.6790 0.0027 7 7 3.6074 -3.6630 0.0033 8 6 4.2972 -2.5298 -0.0035 9 6 5.7783 -2.5734 -0.0095 10 8 6.4158 -1.5467 -0.1366 11 7 6.4183 -3.7517 0.1258 12 6 5.6507 -4.9963 0.2138 13 6 5.2870 -5.4613 -1.1728 14 1 5.5964 -4.8869 -2.0335 15 6 4.5593 -6.6201 -1.3427 16 7 4.2416 -7.0256 -2.5527 17 14 4.0248 -7.6140 0.1460 18 1 2.6945 -7.1405 0.6055 19 1 3.9389 -9.0500 -0.2226 20 1 5.0161 -7.4416 1.2382 21 6 7.8817 -3.7878 0.1850 22 6 8.3296 -3.6671 1.6188 23 6 8.5777 -2.4210 2.1744 24 6 8.9834 -2.3578 3.4984 25 6 9.1365 -3.5313 4.2127 26 7 8.8963 -4.6994 3.6502 27 6 8.5033 -4.7971 2.3950 28 6 3.6445 -1.3001 0.0007 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 0.4843 -2.5268 0.0017 33 1 1.7730 -4.6257 0.0031 34 1 6.2521 -5.7600 0.7070 35 1 4.7411 -4.8225 0.7889 36 1 3.7299 -7.8410 -2.6722 37 1 8.2388 -4.7308 -0.2291 38 1 8.2893 -2.9592 -0.3939 39 1 8.4539 -1.5208 1.5905 40 1 9.1820 -1.4041 3.9646 41 1 9.4563 -3.4910 5.2434 42 1 8.3166 -5.7715 1.9684 43 1 4.2084 -0.3790 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184828672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:43 Heat of formation + Delta-G solvation = 29.462411 kcal Electronic energy + Delta-G solvation = -29062.692298 eV Core-core repulsion = 25074.369018 eV Total energy + Delta-G solvation = -3988.323280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66937 -40.06135 -39.20617 -38.19295 -35.51205 -33.33854 -32.66805 -32.15503 -31.50782 -31.14853 -29.85517 -28.09860 -26.47574 -24.70555 -23.55349 -23.43106 -22.44035 -22.00592 -20.73386 -18.79846 -17.16481 -17.10252 -16.91887 -16.73901 -16.17154 -15.80077 -15.59851 -15.30766 -15.17110 -15.06649 -14.56437 -14.43010 -14.18913 -13.88210 -13.68220 -13.40626 -13.21440 -12.92363 -12.73960 -12.58400 -12.43239 -12.37665 -12.12506 -11.91587 -11.66499 -11.28860 -10.96407 -10.77063 -10.28611 -10.05448 -9.85966 -9.75773 -9.64681 -9.54339 -9.32600 -9.01996 -8.96307 -8.70786 -8.44885 -7.85328 -6.12732 -4.06252 0.54622 1.01208 1.19374 1.42149 2.34690 3.19206 3.20290 3.29623 3.32241 3.48852 3.84571 4.04366 4.18627 4.34513 4.54353 4.56778 4.71586 4.90287 4.94650 4.98062 5.04518 5.12168 5.15157 5.15845 5.19823 5.22337 5.23918 5.44205 5.55443 5.63317 5.78064 5.90458 5.92345 5.96144 6.06159 6.10392 6.25757 6.41240 6.49147 6.63431 6.82705 7.04330 7.31249 7.32395 7.56728 7.96607 8.08013 8.11083 8.43807 8.69399 8.91255 9.48153 11.00374 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008041 B = 0.005045 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3481.240669 B = 5548.462750 C = 8018.163131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.399 3.601 3 O -0.452 6.452 4 C -0.150 4.150 5 C -0.112 4.112 6 C 0.083 3.917 7 N -0.369 5.369 8 C 0.078 3.922 9 C 0.572 3.428 10 O -0.560 6.560 11 N -0.564 5.564 12 C 0.198 3.802 13 C -0.497 4.497 14 H 0.071 0.929 15 C 0.078 3.922 16 N -0.898 5.898 17 Si 0.870 3.130 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.157 3.843 22 C -0.147 4.147 23 C -0.056 4.056 24 C -0.180 4.180 25 C 0.091 3.909 26 N -0.489 5.489 27 C 0.113 3.887 28 C -0.064 4.064 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.163 0.837 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.263 0.737 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 8.246 9.257 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.276 3.724 3 O -0.326 6.326 4 C -0.159 4.159 5 C -0.132 4.132 6 C -0.075 4.075 7 N -0.081 5.081 8 C -0.060 4.060 9 C 0.360 3.640 10 O -0.440 6.440 11 N -0.292 5.292 12 C 0.077 3.923 13 C -0.536 4.536 14 H 0.089 0.911 15 C -0.124 4.124 16 N -0.537 5.537 17 Si 0.698 3.302 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.191 1.191 21 C 0.033 3.967 22 C -0.150 4.150 23 C -0.082 4.082 24 C -0.199 4.199 25 C -0.066 4.066 26 N -0.198 5.198 27 C -0.044 4.044 28 C -0.085 4.085 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.160 0.840 33 H 0.180 0.820 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.174 0.826 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.958 7.629 9.581 12.403 hybrid contribution -1.153 0.608 0.033 1.303 sum -3.111 8.237 9.614 13.037 Atomic orbital electron populations 1.22235 0.93214 1.05233 1.04805 1.22538 0.91729 0.87162 0.70935 1.90545 1.72237 1.34071 1.35742 1.20769 0.94266 0.95315 1.05575 1.22643 1.01431 0.92526 0.96622 1.23078 0.90125 0.98147 0.96181 1.68483 1.08128 1.27467 1.04028 1.21161 0.94965 0.88949 1.00916 1.17775 0.85753 0.83552 0.76967 1.90688 1.66969 1.33725 1.52630 1.47898 1.05387 1.07997 1.67904 1.20535 0.92276 0.80078 0.99371 1.21153 1.33480 1.07819 0.91160 0.91091 1.24717 0.95382 0.97065 0.95247 1.69904 1.39208 1.23643 1.20933 0.86964 0.79851 0.79550 0.83865 1.20020 1.21504 1.19050 1.20264 0.81142 1.04452 0.90834 1.21414 1.00431 0.94239 0.98929 1.21690 0.93601 0.98115 0.94811 1.22123 1.02439 0.99939 0.95447 1.22712 0.96194 0.87895 0.99831 1.67705 1.11781 1.28268 1.12037 1.22791 0.93707 0.98725 0.89198 1.22296 0.93495 0.99591 0.93112 0.88643 0.89585 0.88531 0.83988 0.81956 0.95931 0.90972 0.92686 0.88565 0.89180 0.84320 0.85118 0.83200 0.82591 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 9.01 36.01 0.32 -1.17 16 2 C 0.40 4.96 7.25 -30.52 -0.22 4.73 16 3 O -0.45 -7.15 17.18 5.62 0.10 -7.05 16 4 C -0.15 -2.11 5.90 -104.77 -0.62 -2.73 16 5 C -0.11 -1.38 9.56 -38.81 -0.37 -1.75 16 6 C 0.08 1.30 11.17 -17.62 -0.20 1.11 16 7 N -0.37 -7.16 4.93 -9.86 -0.05 -7.21 16 8 C 0.08 1.51 6.62 -83.06 -0.55 0.96 16 9 C 0.57 11.76 7.58 -12.18 -0.09 11.66 16 10 O -0.56 -11.83 15.70 5.35 0.08 -11.75 16 11 N -0.56 -11.29 2.46 -177.43 -0.44 -11.72 16 12 C 0.20 4.30 3.84 -5.19 -0.02 4.28 16 13 C -0.50 -12.65 8.49 -34.43 -0.29 -12.94 16 14 H 0.07 2.07 8.06 -52.49 -0.42 1.64 16 15 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -25.44 13.96 55.43 0.77 -24.67 16 17 Si 0.87 19.55 27.47 -169.99 -4.67 14.88 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -5.77 6.54 56.52 0.37 -5.40 16 21 C 0.16 2.67 5.55 -5.19 -0.03 2.64 16 22 C -0.15 -2.30 5.48 -104.48 -0.57 -2.88 16 23 C -0.06 -0.81 9.86 -39.28 -0.39 -1.20 16 24 C -0.18 -2.25 10.11 -39.44 -0.40 -2.64 16 25 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 26 N -0.49 -7.58 10.36 -13.25 -0.14 -7.72 16 27 C 0.11 1.77 10.86 -17.55 -0.19 1.58 16 28 C -0.06 -1.09 9.20 -38.56 -0.35 -1.45 16 29 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 31 H 0.10 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.14 1.12 7.22 -52.49 -0.38 0.74 16 33 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 34 H 0.02 0.49 7.07 -51.93 -0.37 0.12 16 35 H 0.07 1.59 4.69 -52.20 -0.24 1.34 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.10 1.56 8.02 -51.93 -0.42 1.14 16 38 H 0.09 1.51 7.33 -51.93 -0.38 1.13 16 39 H 0.14 2.02 7.85 -52.48 -0.41 1.61 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.16 2.32 8.06 -52.49 -0.42 1.89 16 43 H 0.15 2.62 7.34 -52.49 -0.39 2.24 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -32.63 372.43 -8.12 -40.75 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.13 Total: 5.74 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -4.26 Total: 3.13 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.15 Total: -51.32 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.18 Total: -18.80 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.67 Total: 14.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.63 -8.12 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184828672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.212 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds