Wall clock time and date at job start Tue Mar 31 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21211 * 120.00082 * 2 1 4 4 C 1.47541 * 120.00256 * 179.97438 * 2 1 3 5 5 C 1.40050 * 120.91326 * 359.97438 * 4 2 1 6 6 C 1.38475 * 119.15615 * 180.02562 * 5 4 2 7 7 N 1.31466 * 121.06235 * 0.03042 * 6 5 4 8 8 C 1.32669 * 122.02726 * 359.67521 * 7 6 5 9 9 C 1.48168 * 119.64417 * 180.31557 * 8 7 6 10 10 O 1.21523 * 119.99841 * 173.40392 * 9 8 7 11 11 N 1.34772 * 120.00140 * 353.40907 * 9 8 7 12 12 C 1.46495 * 119.99828 * 2.95414 * 11 9 8 13 13 C 1.50705 * 109.46778 * 82.69329 * 12 11 9 14 14 H 1.07998 * 120.00234 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99927 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99700 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99783 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46967 * 90.00525 * 17 15 13 19 19 H 1.48501 * 109.46589 * 210.00073 * 17 15 13 20 20 H 1.48497 * 109.47256 * 330.00222 * 17 15 13 21 21 C 1.46501 * 119.99868 * 182.96024 * 11 9 8 22 22 C 1.50698 * 109.47240 * 89.99883 * 21 11 9 23 23 C 1.38677 * 120.41979 * 269.72076 * 22 21 11 24 24 C 1.38623 * 118.42471 * 179.78154 * 23 22 21 25 25 C 1.38230 * 119.15765 * 0.51189 * 24 23 22 26 26 N 1.31852 * 120.76464 * 359.72826 * 25 24 23 27 27 C 1.31892 * 121.72736 * 359.97438 * 26 25 24 28 28 C 1.39223 * 120.70960 * 0.58594 * 8 7 6 29 29 H 1.09003 * 109.46980 * 240.00002 * 1 2 3 30 30 H 1.08995 * 109.46909 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46568 * 120.00390 * 1 2 3 32 32 H 1.07999 * 120.42145 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.46816 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47075 * 202.68540 * 12 11 9 35 35 H 1.09000 * 109.47821 * 322.69466 * 12 11 9 36 36 H 0.97006 * 119.99383 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.46683 * 209.99614 * 21 11 9 38 38 H 1.08993 * 109.47213 * 329.99874 * 21 11 9 39 39 H 1.08007 * 120.78738 * 0.02562 * 23 22 21 40 40 H 1.07998 * 120.42370 * 180.21921 * 24 23 22 41 41 H 1.07998 * 119.61931 * 179.74672 * 25 24 23 42 42 H 1.08001 * 119.61809 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.56504 * 179.73329 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0497 0.0000 4 6 2.2447 -1.2777 0.0006 5 6 1.5640 -2.5016 0.0017 6 6 2.2928 -3.6790 0.0027 7 7 3.6074 -3.6630 0.0033 8 6 4.2972 -2.5298 -0.0035 9 6 5.7783 -2.5734 -0.0095 10 8 6.4158 -1.5467 -0.1366 11 7 6.4183 -3.7517 0.1258 12 6 5.6507 -4.9963 0.2138 13 6 5.2870 -5.4613 -1.1728 14 1 5.5964 -4.8869 -2.0335 15 6 4.5593 -6.6201 -1.3427 16 7 4.2416 -7.0256 -2.5527 17 14 4.0248 -7.6140 0.1460 18 1 2.6945 -7.1405 0.6055 19 1 3.9389 -9.0500 -0.2226 20 1 5.0161 -7.4416 1.2382 21 6 7.8817 -3.7878 0.1850 22 6 8.3296 -3.6671 1.6188 23 6 8.5777 -2.4210 2.1744 24 6 8.9834 -2.3578 3.4984 25 6 9.1365 -3.5313 4.2127 26 7 8.8963 -4.6994 3.6502 27 6 8.5033 -4.7971 2.3950 28 6 3.6445 -1.3001 0.0007 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 0.4843 -2.5268 0.0017 33 1 1.7730 -4.6257 0.0031 34 1 6.2521 -5.7600 0.7070 35 1 4.7411 -4.8225 0.7889 36 1 3.7299 -7.8410 -2.6722 37 1 8.2388 -4.7308 -0.2291 38 1 8.2893 -2.9592 -0.3939 39 1 8.4539 -1.5208 1.5905 40 1 9.1820 -1.4041 3.9646 41 1 9.4563 -3.4910 5.2434 42 1 8.3166 -5.7715 1.9684 43 1 4.2084 -0.3790 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184828672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:42 Heat of formation + Delta-G solvation = 9.336282 kcal Electronic energy + Delta-G solvation = -29063.565033 eV Core-core repulsion = 25074.369018 eV Total energy + Delta-G solvation = -3989.196014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98682 -41.21377 -40.43190 -39.51662 -37.09994 -34.78334 -34.20753 -33.51540 -32.73632 -32.36811 -30.68650 -29.86498 -27.84001 -25.93202 -24.87327 -24.61434 -24.09535 -23.21062 -21.95071 -20.11864 -19.01258 -18.46659 -18.19781 -17.95984 -17.34094 -17.11386 -16.85276 -16.70580 -16.40114 -16.16233 -15.91682 -15.72873 -15.60760 -15.20201 -14.94553 -14.67576 -14.59507 -14.24775 -14.17234 -13.92863 -13.68580 -13.35744 -13.22608 -13.03010 -12.86086 -12.72949 -12.61248 -12.37772 -12.01760 -11.65350 -11.31994 -11.10456 -11.02340 -10.81460 -10.61303 -10.50540 -10.29314 -10.12598 -9.86776 -9.47096 -8.14806 -6.14131 -0.58928 -0.27739 0.07298 0.28555 1.25347 1.43657 1.48302 1.56480 1.78975 2.09698 2.45760 2.80152 2.85335 2.92979 3.18822 3.23360 3.49630 3.60611 3.80342 3.82010 3.86127 3.91077 3.99887 4.04917 4.06857 4.30661 4.42574 4.51679 4.62219 4.65119 4.67317 4.70749 4.72719 4.76881 4.83268 4.89740 5.15304 5.19660 5.23590 5.32202 5.50630 5.59900 5.73227 5.74606 6.24104 6.37373 6.50102 6.77498 6.84305 6.96547 7.14276 7.46029 9.02379 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008041 B = 0.005045 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3481.240669 B = 5548.462750 C = 8018.163131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.403 3.597 3 O -0.495 6.495 4 C -0.151 4.151 5 C -0.071 4.071 6 C 0.068 3.932 7 N -0.406 5.406 8 C 0.049 3.951 9 C 0.562 3.438 10 O -0.578 6.578 11 N -0.570 5.570 12 C 0.211 3.789 13 C -0.489 4.489 14 H 0.017 0.983 15 C 0.031 3.969 16 N -0.950 5.950 17 Si 0.930 3.070 18 H -0.248 1.248 19 H -0.295 1.295 20 H -0.254 1.254 21 C 0.156 3.844 22 C -0.157 4.157 23 C -0.066 4.066 24 C -0.169 4.169 25 C 0.093 3.907 26 N -0.508 5.508 27 C 0.102 3.898 28 C -0.076 4.076 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.203 0.797 33 H 0.180 0.820 34 H 0.027 0.973 35 H 0.081 0.919 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.165 0.835 41 H 0.188 0.812 42 H 0.156 0.844 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 8.586 12.105 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.283 3.717 3 O -0.372 6.372 4 C -0.160 4.160 5 C -0.091 4.091 6 C -0.091 4.091 7 N -0.119 5.119 8 C -0.088 4.088 9 C 0.350 3.650 10 O -0.460 6.460 11 N -0.297 5.297 12 C 0.090 3.910 13 C -0.528 4.528 14 H 0.036 0.964 15 C -0.167 4.167 16 N -0.592 5.592 17 Si 0.754 3.246 18 H -0.172 1.172 19 H -0.221 1.221 20 H -0.178 1.178 21 C 0.033 3.967 22 C -0.160 4.160 23 C -0.093 4.093 24 C -0.188 4.188 25 C -0.064 4.064 26 N -0.216 5.216 27 C -0.055 4.055 28 C -0.097 4.097 29 H 0.145 0.855 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.220 0.780 33 H 0.197 0.803 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.150 0.850 40 H 0.183 0.817 41 H 0.205 0.795 42 H 0.173 0.827 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.683 7.980 12.440 15.504 hybrid contribution -0.328 0.654 -0.882 1.146 sum -5.012 8.634 11.559 15.273 Atomic orbital electron populations 1.22312 0.88256 1.06660 1.07341 1.23240 0.93992 0.85430 0.69080 1.90549 1.73576 1.35185 1.37880 1.21199 0.93036 0.97444 1.04319 1.23128 1.03961 0.90051 0.91929 1.23545 0.89198 1.00315 0.96071 1.68235 1.10329 1.27878 1.05410 1.20975 0.94228 0.89922 1.03680 1.18195 0.86859 0.83395 0.76509 1.90646 1.67695 1.34113 1.53561 1.47928 1.06416 1.07414 1.67926 1.20281 0.92910 0.80714 0.97078 1.21104 1.33151 1.07313 0.91244 0.96442 1.25428 0.95285 0.97999 0.97952 1.70063 1.41021 1.24526 1.23550 0.85999 0.80939 0.77301 0.80397 1.17174 1.22139 1.17821 1.20310 0.79821 1.04199 0.92378 1.21200 1.01789 0.95081 0.97910 1.21772 0.94129 0.97361 0.96038 1.22465 1.00586 1.01515 0.94227 1.23356 0.94675 0.87123 1.01273 1.67741 1.12409 1.29729 1.11749 1.22784 0.94398 0.98627 0.89643 1.22270 0.95364 0.98146 0.93943 0.85468 0.89049 0.85962 0.77983 0.80306 0.95487 0.90173 0.92726 0.88524 0.89776 0.84988 0.81699 0.79532 0.82669 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 9.01 71.24 0.64 -1.23 16 2 C 0.40 8.96 7.25 28.14 0.20 9.16 16 3 O -0.50 -15.35 17.18 -2.82 -0.05 -15.39 16 4 C -0.15 -3.93 5.90 -19.96 -0.12 -4.05 16 5 C -0.07 -1.46 9.56 22.77 0.22 -1.24 16 6 C 0.07 1.98 11.17 84.80 0.95 2.93 16 7 N -0.41 -15.79 4.93 -185.11 -0.91 -16.71 16 8 C 0.05 1.94 6.62 41.89 0.28 2.22 16 9 C 0.56 24.48 7.58 86.88 0.66 25.14 16 10 O -0.58 -26.10 15.70 -3.79 -0.06 -26.16 16 11 N -0.57 -24.03 2.46 -833.57 -2.05 -26.09 16 12 C 0.21 9.44 3.84 85.64 0.33 9.77 16 13 C -0.49 -26.03 8.49 25.60 0.22 -25.81 16 14 H 0.02 1.09 8.06 -2.91 -0.02 1.06 16 15 C 0.03 1.63 5.47 84.66 0.46 2.10 16 16 N -0.95 -55.63 13.96 21.45 0.30 -55.33 16 17 Si 0.93 39.87 27.47 68.60 1.88 41.75 16 18 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 19 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 21 C 0.16 5.66 5.55 85.63 0.48 6.14 16 22 C -0.16 -5.05 5.48 -19.77 -0.11 -5.16 16 23 C -0.07 -1.94 9.86 22.47 0.22 -1.71 16 24 C -0.17 -3.88 10.11 22.36 0.23 -3.65 16 25 C 0.09 2.18 11.18 84.69 0.95 3.13 16 26 N -0.51 -15.11 10.36 -195.84 -2.03 -17.14 16 27 C 0.10 3.21 10.86 84.67 0.92 4.13 16 28 C -0.08 -2.66 9.20 22.93 0.21 -2.44 16 29 H 0.13 0.55 8.12 -2.39 -0.02 0.53 16 30 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 31 H 0.12 0.69 8.13 -2.39 -0.02 0.67 16 32 H 0.20 1.70 7.22 -2.91 -0.02 1.68 16 33 H 0.18 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.03 1.18 7.07 -2.39 -0.02 1.16 16 35 H 0.08 3.54 4.69 -2.91 -0.01 3.53 16 36 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 37 H 0.10 3.38 8.02 -2.39 -0.02 3.36 16 38 H 0.08 3.08 7.33 -2.39 -0.02 3.06 16 39 H 0.13 3.98 7.85 -2.91 -0.02 3.96 16 40 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.19 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.16 4.73 8.06 -2.91 -0.02 4.70 16 43 H 0.13 5.01 7.34 -2.91 -0.02 4.99 16 Total: -1.00 -77.79 372.43 4.80 -72.99 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.99 Total: 22.66 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 6.73 Total: 19.42 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.69 Total: -115.26 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.11 Total: -41.55 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.88 Total: 41.75 kcal Total: -77.79 4.80 -72.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184828672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.324 kcal (2) G-P(sol) polarization free energy of solvation -77.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds