Wall clock time and date at job start Tue Mar 31 2020 22:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21268 * 119.99755 * 2 1 4 4 N 1.34770 * 119.99816 * 179.72563 * 2 1 3 5 5 C 1.38984 * 120.00025 * 174.91221 * 4 2 1 6 6 C 1.39275 * 119.52475 * 185.17006 * 5 4 2 7 7 C 1.36926 * 119.39014 * 179.97438 * 6 5 4 8 8 C 1.40337 * 118.47618 * 359.97438 * 7 6 5 9 9 C 1.47495 * 120.48999 * 180.02562 * 8 7 6 10 10 O 1.21620 * 120.00008 * 330.26366 * 9 8 7 11 11 N 1.34776 * 120.00247 * 150.26988 * 9 8 7 12 12 C 1.36906 * 119.99935 * 357.73807 * 11 9 8 13 13 H 1.08001 * 119.99603 * 316.15651 * 12 11 9 14 14 C 1.39021 * 120.00047 * 136.15049 * 12 11 9 15 15 N 1.31377 * 119.99971 * 167.12953 * 14 12 11 16 16 Si 1.86794 * 120.00022 * 347.13319 * 14 12 11 17 17 H 1.48501 * 109.47477 * 90.98212 * 16 14 12 18 18 H 1.48502 * 109.46992 * 210.98668 * 16 14 12 19 19 H 1.48503 * 109.47164 * 330.98379 * 16 14 12 20 20 C 1.46501 * 120.00358 * 177.74550 * 11 9 8 21 21 C 1.50703 * 109.47404 * 91.27235 * 20 11 9 22 22 C 1.38237 * 119.99836 * 273.90561 * 21 20 11 23 23 C 1.38236 * 119.99614 * 179.76558 * 22 21 20 24 24 C 1.38236 * 119.99905 * 0.48392 * 23 22 21 25 25 C 1.38229 * 120.00204 * 359.78665 * 24 23 22 26 26 C 1.38233 * 120.00075 * 359.96061 * 25 24 23 27 27 C 1.39635 * 119.02034 * 0.02562 * 8 7 6 28 28 N 1.31667 * 120.50431 * 359.73952 * 27 8 7 29 29 H 1.09000 * 109.47267 * 270.27500 * 1 2 3 30 30 H 1.09001 * 109.47019 * 30.27853 * 1 2 3 31 31 H 1.09004 * 109.47170 * 150.27624 * 1 2 3 32 32 H 0.97000 * 120.00377 * 354.90917 * 4 2 1 33 33 H 1.08002 * 120.30143 * 359.94552 * 6 5 4 34 34 H 1.07998 * 120.76480 * 180.02562 * 7 6 5 35 35 H 0.96994 * 120.00194 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.46937 * 211.27180 * 20 11 9 37 37 H 1.08994 * 109.46927 * 331.27156 * 20 11 9 38 38 H 1.07994 * 119.99827 * 359.97438 * 22 21 20 39 39 H 1.07996 * 119.99939 * 180.25028 * 23 22 21 40 40 H 1.08007 * 120.00046 * 179.77222 * 24 23 22 41 41 H 1.08003 * 120.00012 * 179.97438 * 25 24 23 42 42 H 1.08007 * 120.00220 * 180.02562 * 26 25 24 43 43 H 1.07996 * 119.75041 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 7 2.1809 -1.1672 0.0056 5 6 3.5666 -1.1701 -0.1011 6 6 4.2445 -2.3824 -0.2033 7 6 5.6097 -2.3821 -0.3089 8 6 6.2804 -1.1493 -0.3107 9 6 7.7501 -1.0971 -0.4228 10 8 8.4260 -2.0101 0.0119 11 7 8.3443 -0.0377 -1.0068 12 6 7.5820 0.9682 -1.5373 13 1 6.7108 0.7304 -2.1297 14 6 7.9293 2.2956 -1.3134 15 7 7.3632 3.2502 -2.0163 16 14 9.2009 2.7217 -0.0131 17 1 10.5503 2.7541 -0.6322 18 1 8.8897 4.0533 0.5658 19 1 9.1735 1.6964 1.0608 20 6 9.8058 0.0375 -1.0740 21 6 10.2822 -0.5848 -2.3612 22 6 10.5031 -1.9477 -2.4297 23 6 10.9354 -2.5192 -3.6118 24 6 11.1564 -1.7265 -4.7225 25 6 10.9409 -0.3629 -4.6524 26 6 10.5036 0.2079 -3.4718 27 6 5.5357 0.0271 -0.2048 28 7 4.2233 -0.0189 -0.1099 29 1 -0.3634 0.0049 1.0276 30 1 -0.3633 0.8875 -0.5182 31 1 -0.3634 -0.8925 -0.5096 32 1 1.6988 -2.0052 0.0841 33 1 3.6985 -3.3142 -0.1988 34 1 6.1578 -3.3091 -0.3897 35 1 7.6057 4.1763 -1.8604 36 1 10.1179 1.0812 -1.0378 37 1 10.2365 -0.5001 -0.2294 38 1 10.3347 -2.5664 -1.5607 39 1 11.1041 -3.5845 -3.6666 40 1 11.4978 -2.1725 -5.6451 41 1 11.1140 0.2565 -5.5201 42 1 10.3348 1.2733 -3.4171 43 1 6.0397 0.9823 -0.2054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189907904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:37 Heat of formation + Delta-G solvation = 4.894001 kcal Electronic energy + Delta-G solvation = -28982.536416 eV Core-core repulsion = 24993.147770 eV Total energy + Delta-G solvation = -3989.388646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.94960 -41.03351 -40.01391 -39.27981 -36.98429 -35.97720 -34.20458 -33.44298 -32.87462 -31.73967 -31.67633 -29.98667 -27.62202 -26.99658 -24.84522 -24.59206 -23.38328 -22.48136 -21.53057 -21.20593 -19.54304 -19.20516 -18.40745 -18.03637 -17.46587 -17.24574 -16.60953 -16.47582 -16.30208 -16.00517 -15.87753 -15.62204 -15.45631 -14.80847 -14.72620 -14.65750 -14.55092 -14.21014 -14.07987 -13.95626 -13.66363 -13.46866 -13.28902 -13.23272 -13.01064 -12.97942 -12.36916 -12.07441 -11.98268 -11.75740 -11.67171 -11.36811 -11.13905 -10.82577 -10.75402 -10.00533 -9.78175 -9.75545 -9.63997 -9.25720 -8.53260 -6.23233 -0.17090 0.40333 0.43049 0.54326 1.13655 1.26904 1.35382 1.59800 1.93319 2.04743 2.11397 2.49672 2.81117 3.05175 3.09182 3.48767 3.82872 3.88560 3.95074 4.02510 4.10784 4.15809 4.20431 4.22414 4.29590 4.32994 4.48957 4.55514 4.69368 4.72245 4.76299 4.78479 4.99787 5.11123 5.11868 5.18105 5.20498 5.36318 5.36655 5.60578 5.62202 5.78926 5.81764 6.00298 6.14408 6.16340 6.29140 6.86230 7.00194 7.27425 7.40386 7.64639 8.58877 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.003810 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.703891 B = 7346.679430 C = 8430.873579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.485 3.515 3 O -0.539 6.539 4 N -0.643 5.643 5 C 0.350 3.650 6 C -0.198 4.198 7 C -0.009 4.009 8 C -0.214 4.214 9 C 0.531 3.469 10 O -0.601 6.601 11 N -0.460 5.460 12 C -0.329 4.329 13 H 0.072 0.928 14 C 0.037 3.963 15 N -0.890 5.890 16 Si 0.919 3.081 17 H -0.251 1.251 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.132 3.868 21 C -0.106 4.106 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.115 4.115 27 C 0.169 3.831 28 N -0.524 5.524 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.441 0.559 33 H 0.191 0.809 34 H 0.157 0.843 35 H 0.281 0.719 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.105 0.895 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 -12.933 -0.284 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.274 3.726 3 O -0.412 6.412 4 N -0.293 5.293 5 C 0.117 3.883 6 C -0.220 4.220 7 C -0.036 4.036 8 C -0.220 4.220 9 C 0.322 3.678 10 O -0.488 6.488 11 N -0.179 5.179 12 C -0.457 4.457 13 H 0.090 0.910 14 C -0.168 4.168 15 N -0.525 5.525 16 Si 0.745 3.255 17 H -0.176 1.176 18 H -0.210 1.210 19 H -0.190 1.190 20 C 0.010 3.990 21 C -0.107 4.107 22 C -0.133 4.133 23 C -0.144 4.144 24 C -0.136 4.136 25 C -0.146 4.146 26 C -0.134 4.134 27 C 0.012 3.988 28 N -0.239 5.239 29 H 0.136 0.864 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.282 0.718 33 H 0.208 0.792 34 H 0.175 0.825 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.165 0.835 40 H 0.172 0.828 41 H 0.160 0.840 42 H 0.124 0.876 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.614 -11.568 -0.065 13.325 hybrid contribution 0.860 0.083 0.459 0.978 sum -5.755 -11.484 0.394 12.851 Atomic orbital electron populations 1.21923 0.85821 1.06823 1.06773 1.22314 0.92925 0.82678 0.74690 1.90894 1.71690 1.32843 1.45799 1.43634 1.02627 1.11921 1.71121 1.19232 0.86326 0.90199 0.92562 1.21436 0.94114 0.98242 1.08229 1.21368 0.94241 0.96925 0.91039 1.20823 0.94319 0.95981 1.10878 1.18350 0.87784 0.83123 0.78562 1.90578 1.65940 1.39097 1.53153 1.43605 1.04190 1.19578 1.50526 1.18666 1.10788 0.84852 1.31367 0.91033 1.25838 0.98466 0.95245 0.97283 1.69733 1.43119 1.01361 1.38322 0.86260 0.80317 0.78070 0.80903 1.17620 1.20990 1.18962 1.20719 0.82451 0.99849 0.95947 1.20162 0.99707 0.94906 0.95949 1.21234 0.98991 0.93845 0.99261 1.21425 0.99565 1.01016 0.92404 1.21484 0.99536 0.93283 0.99310 1.21391 0.99673 0.96240 0.97293 1.21151 0.99019 0.99633 0.93601 1.23700 0.87710 0.99401 0.87996 1.67858 1.09742 1.28541 1.17768 0.86437 0.88995 0.86218 0.71772 0.79203 0.82532 0.90851 0.91462 0.90222 0.86497 0.83499 0.82754 0.84035 0.87642 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.31 71.24 0.73 -1.20 16 2 C 0.48 13.03 7.89 87.66 0.69 13.72 16 3 O -0.54 -22.56 15.34 -2.99 -0.05 -22.61 16 4 N -0.64 -14.65 5.37 -308.49 -1.66 -16.31 16 5 C 0.35 11.55 7.42 133.06 0.99 12.54 16 6 C -0.20 -5.29 9.86 22.21 0.22 -5.07 16 7 C -0.01 -0.32 9.67 22.47 0.22 -0.10 16 8 C -0.21 -9.42 5.53 -19.99 -0.11 -9.53 16 9 C 0.53 25.60 7.42 86.68 0.64 26.24 16 10 O -0.60 -29.30 15.55 -4.09 -0.06 -29.37 16 11 N -0.46 -22.73 2.09 -643.25 -1.34 -24.08 16 12 C -0.33 -17.66 6.41 84.09 0.54 -17.12 16 13 H 0.07 4.30 6.96 -2.91 -0.02 4.28 16 14 C 0.04 2.01 5.16 84.95 0.44 2.44 16 15 N -0.89 -50.60 13.95 21.68 0.30 -50.29 16 16 Si 0.92 42.66 24.85 68.60 1.70 44.36 16 17 H -0.25 -10.76 6.64 99.48 0.66 -10.10 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 C 0.13 5.99 4.30 85.63 0.37 6.36 16 21 C -0.11 -4.39 5.46 -19.86 -0.11 -4.49 16 22 C -0.11 -4.24 9.69 22.27 0.22 -4.03 16 23 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 24 C -0.12 -3.21 10.05 22.27 0.22 -2.99 16 25 C -0.13 -4.01 10.05 22.27 0.22 -3.78 16 26 C -0.12 -4.50 9.68 22.27 0.22 -4.28 16 27 C 0.17 8.09 9.11 85.06 0.77 8.87 16 28 N -0.52 -23.49 7.85 -192.00 -1.51 -24.99 16 29 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.44 4.62 8.69 -92.71 -0.81 3.81 16 33 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.16 4.67 7.98 -2.91 -0.02 4.65 16 35 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.07 3.07 3.14 -2.39 -0.01 3.06 16 37 H 0.08 3.53 7.38 -2.39 -0.02 3.52 16 38 H 0.12 4.50 7.28 -2.91 -0.02 4.47 16 39 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 42 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 43 H 0.16 8.77 5.30 -2.91 -0.02 8.76 16 Total: -1.00 -81.00 363.67 4.11 -76.90 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.22 Total: 32.33 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.50 Total: 14.06 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -4.20 Total: -115.67 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.11 Total: -51.97 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.70 Total: 44.36 kcal Total: -81.00 4.11 -76.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189907904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.792 kcal (2) G-P(sol) polarization free energy of solvation -81.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds