Wall clock time and date at job start Tue Mar 31 2020 22:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46955 * 110.99789 * 2 1 4 4 C 1.53059 * 109.36247 * 183.18718 * 3 2 1 5 5 N 1.46951 * 109.36415 * 301.59774 * 4 3 2 6 6 C 1.46899 * 110.99888 * 183.18761 * 5 4 3 7 7 C 1.50703 * 109.47218 * 163.41049 * 6 5 4 8 8 C 1.38122 * 120.03498 * 265.32923 * 7 6 5 9 9 C 1.38269 * 120.07214 * 180.02562 * 8 7 6 10 10 C 1.38308 * 120.14801 * 359.97438 * 9 8 7 11 11 C 1.38086 * 120.07609 * 359.74866 * 10 9 8 12 12 C 1.38888 * 120.03345 * 85.30797 * 7 6 5 13 13 N 1.39666 * 120.07828 * 0.02562 * 12 7 6 14 14 S 1.65604 * 119.99975 * 209.88168 * 13 12 7 15 15 O 1.42099 * 106.40233 * 172.27463 * 14 13 12 16 16 O 1.42094 * 106.40568 * 305.19398 * 14 13 12 17 17 C 1.76197 * 107.21567 * 58.73707 * 14 13 12 18 18 H 1.07997 * 120.00192 * 4.66928 * 17 14 13 19 19 C 1.37882 * 119.99988 * 184.67064 * 17 14 13 20 20 N 1.31514 * 119.99971 * 179.97438 * 19 17 14 21 21 Si 1.86793 * 120.00096 * 0.02562 * 19 17 14 22 22 H 1.48496 * 109.47278 * 89.99690 * 21 19 17 23 23 H 1.48500 * 109.47169 * 210.00261 * 21 19 17 24 24 H 1.48504 * 109.47161 * 329.99928 * 21 19 17 25 25 C 1.46955 * 110.88075 * 59.32306 * 5 4 3 26 26 C 1.46954 * 110.99988 * 123.79399 * 2 1 3 27 27 H 1.08992 * 109.47168 * 59.99898 * 1 2 3 28 28 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47199 * 300.00385 * 1 2 3 30 30 H 1.08996 * 109.49599 * 63.22419 * 3 2 1 31 31 H 1.08996 * 109.51105 * 303.16279 * 3 2 1 32 32 H 1.09001 * 109.48522 * 181.62708 * 4 3 2 33 33 H 1.09001 * 109.50007 * 61.57743 * 4 3 2 34 34 H 1.09000 * 109.47082 * 43.41094 * 6 5 4 35 35 H 1.08999 * 109.47306 * 283.41514 * 6 5 4 36 36 H 1.08001 * 119.96889 * 359.97438 * 8 7 6 37 37 H 1.07997 * 119.92466 * 179.97438 * 9 8 7 38 38 H 1.08000 * 119.96104 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.04012 * 180.27427 * 11 10 9 40 40 H 0.97004 * 120.00455 * 29.61071 * 13 12 7 41 41 H 0.97003 * 120.00296 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.49508 * 60.64539 * 25 5 4 43 43 H 1.09000 * 109.49082 * 180.71193 * 25 5 4 44 44 H 1.08999 * 109.49618 * 296.77886 * 26 2 1 45 45 H 1.09007 * 109.48525 * 56.82658 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5190 0.5659 1.0598 7 6 6.0214 0.1456 2.4170 8 6 6.3437 1.1008 3.3612 9 6 6.8052 0.7160 4.6065 10 6 6.9452 -0.6258 4.9113 11 6 6.6194 -1.5860 3.9739 12 6 6.1604 -1.2027 2.7198 13 7 5.8355 -2.1712 1.7674 14 16 5.2828 -3.6555 2.2509 15 8 4.8741 -4.3351 1.0718 16 8 6.2550 -4.1728 3.1488 17 6 3.8232 -3.3845 3.2001 18 1 3.4203 -2.3873 3.2984 19 6 3.1955 -4.4456 3.8175 20 7 2.1064 -4.2433 4.5264 21 14 3.8927 -6.1703 3.6482 22 1 4.8586 -6.4238 4.7472 23 1 2.7881 -7.1601 3.7216 24 1 4.5857 -6.2979 2.3410 25 6 3.5235 -0.8060 1.0598 26 6 1.9956 -0.7631 1.1401 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6938 1.8774 0.9173 31 1 1.6013 1.9132 -0.8600 32 1 3.9177 2.3449 -0.0513 33 1 3.8256 0.8481 -1.0106 34 1 5.8824 1.5681 0.8323 35 1 5.8824 -0.1321 0.3056 36 1 6.2359 2.1494 3.1263 37 1 7.0568 1.4649 5.3428 38 1 7.3063 -0.9230 5.8848 39 1 6.7247 -2.6337 4.2141 40 1 5.9299 -1.9731 0.8225 41 1 1.6645 -4.9898 4.9604 42 1 3.8253 -1.3115 0.1425 43 1 3.9178 -1.3469 1.9201 44 1 1.6938 -0.2819 2.0705 45 1 1.6010 -1.7788 1.1113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192971993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:34 Heat of formation + Delta-G solvation = -23.026444 kcal Electronic energy + Delta-G solvation = -29539.118569 eV Core-core repulsion = 25683.963153 eV Total energy + Delta-G solvation = -3855.155416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -39.85808 -38.51606 -35.93227 -35.37694 -34.68559 -34.47096 -33.13723 -31.45075 -30.61153 -28.91505 -27.92851 -26.53896 -25.09074 -23.44807 -22.93385 -22.18893 -20.70901 -19.53266 -19.26137 -17.81037 -17.27087 -16.87131 -16.07859 -15.59622 -15.28776 -14.90866 -14.80193 -14.67164 -14.42528 -14.23274 -14.02551 -13.95309 -13.62429 -13.23667 -12.99816 -12.68855 -12.51088 -12.26431 -12.22073 -11.87343 -11.75739 -11.50177 -11.38431 -11.28219 -11.13210 -11.04783 -10.81448 -10.68784 -10.63830 -10.55256 -10.21919 -10.11937 -9.84568 -9.30203 -9.10711 -8.44090 -8.23332 -8.04342 -7.65631 -6.87515 -5.44285 1.62391 1.78189 1.95294 3.01466 3.10486 3.18286 3.86469 3.95991 4.03665 4.14144 4.39817 4.51075 4.94231 5.03727 5.05695 5.15094 5.22695 5.34425 5.44774 5.45099 5.49599 5.55012 5.59318 5.63547 5.68342 5.77568 5.85264 5.91649 5.93967 5.96393 5.99668 6.15712 6.23284 6.34161 6.38075 6.51641 6.59067 6.72286 6.93068 7.04041 7.11327 7.17004 7.28736 7.32794 7.36858 7.39429 7.61952 8.14178 8.61105 10.23405 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009794 B = 0.006424 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.142618 B = 4357.851384 C = 6089.218367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.058 3.942 4 C 0.056 3.944 5 N -0.531 5.531 6 C 0.102 3.898 7 C -0.115 4.115 8 C -0.081 4.081 9 C -0.153 4.153 10 C -0.088 4.088 11 C -0.165 4.165 12 C 0.192 3.808 13 N -1.061 6.061 14 S 2.660 3.340 15 O -0.997 6.997 16 O -1.002 7.002 17 C -1.007 5.007 18 H 0.132 0.868 19 C 0.158 3.842 20 N -0.812 5.812 21 Si 0.808 3.192 22 H -0.244 1.244 23 H -0.256 1.256 24 H -0.233 1.233 25 C 0.041 3.959 26 C 0.060 3.940 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.164 0.836 40 H 0.412 0.588 41 H 0.282 0.718 42 H 0.039 0.961 43 H 0.108 0.892 44 H 0.043 0.957 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 11.898 -5.001 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.070 4.070 4 C -0.073 4.073 5 N -0.256 5.256 6 C -0.026 4.026 7 C -0.120 4.120 8 C -0.100 4.100 9 C -0.172 4.172 10 C -0.107 4.107 11 C -0.186 4.186 12 C 0.094 3.906 13 N -0.805 5.805 14 S 2.764 3.236 15 O -0.987 6.987 16 O -0.992 6.992 17 C -1.142 5.142 18 H 0.150 0.850 19 C -0.062 4.062 20 N -0.441 5.441 21 Si 0.629 3.371 22 H -0.168 1.168 23 H -0.180 1.180 24 H -0.156 1.156 25 C -0.087 4.087 26 C -0.068 4.068 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.181 0.819 40 H 0.247 0.753 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.126 0.874 44 H 0.062 0.938 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.225 10.901 -5.015 12.425 hybrid contribution -0.451 -0.289 -0.084 0.543 sum 2.774 10.612 -5.100 12.096 Atomic orbital electron populations 1.22317 0.87531 1.02259 1.00080 1.62200 1.07634 1.13371 1.43963 1.22120 0.94501 0.89895 1.00532 1.22167 0.94611 0.98144 0.92336 1.62213 1.06377 1.15051 1.41982 1.20834 0.87676 1.00698 0.93366 1.19415 1.03773 0.91665 0.97098 1.20682 0.98135 0.98304 0.92861 1.20995 1.03333 0.95972 0.96895 1.20942 0.98570 0.92521 0.98683 1.21980 1.00458 1.03343 0.92840 1.17263 0.95939 0.88016 0.89388 1.53805 1.79494 1.32834 1.14346 1.02030 0.76523 0.70289 0.74788 1.93499 1.83905 1.70444 1.50827 1.93331 1.63614 1.76971 1.65292 1.30223 1.29621 1.05245 1.49113 0.85049 1.24333 0.92813 0.98578 0.90519 1.69972 1.15316 1.33598 1.25168 0.87759 0.81486 0.84683 0.83172 1.16758 1.17997 1.15603 1.22744 0.94605 0.88615 1.02688 1.22177 0.94647 0.98963 0.91026 0.91828 0.91196 0.95743 0.94168 0.90823 0.90630 0.94214 0.90101 0.94349 0.86328 0.86528 0.85935 0.81858 0.75322 0.90758 0.94268 0.87424 0.93848 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.60 60.06 0.58 0.92 16 2 N -0.55 -8.28 4.97 -242.75 -1.21 -9.49 16 3 C 0.06 0.75 5.62 -3.76 -0.02 0.73 16 4 C 0.06 0.71 5.58 -3.77 -0.02 0.69 16 5 N -0.53 -8.12 4.65 -235.91 -1.10 -9.22 16 6 C 0.10 1.42 4.95 -4.98 -0.02 1.39 16 7 C -0.11 -1.83 5.19 -104.42 -0.54 -2.37 16 8 C -0.08 -1.14 9.68 -39.61 -0.38 -1.53 16 9 C -0.15 -2.16 10.04 -39.54 -0.40 -2.55 16 10 C -0.09 -1.42 10.04 -39.61 -0.40 -1.81 16 11 C -0.17 -3.18 9.23 -39.38 -0.36 -3.54 16 12 C 0.19 3.57 5.29 -83.79 -0.44 3.13 16 13 N -1.06 -20.60 3.45 32.41 0.11 -20.49 16 14 S 2.66 64.48 3.72 -107.50 -0.40 64.08 16 15 O -1.00 -25.99 16.53 -57.18 -0.95 -26.94 16 16 O -1.00 -25.52 13.46 -57.18 -0.77 -26.29 16 17 C -1.01 -26.47 9.27 30.60 0.28 -26.19 16 18 H 0.13 3.51 6.45 -52.49 -0.34 3.17 16 19 C 0.16 4.31 5.47 -17.82 -0.10 4.21 16 20 N -0.81 -22.21 13.96 55.43 0.77 -21.44 16 21 Si 0.81 20.12 26.34 -169.99 -4.48 15.64 16 22 H -0.24 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.23 -5.97 5.86 56.52 0.33 -5.64 16 25 C 0.04 0.74 4.29 -3.77 -0.02 0.73 16 26 C 0.06 1.07 5.62 -3.77 -0.02 1.05 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.79 8.02 -51.93 -0.42 0.38 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.92 7.81 -51.93 -0.41 0.51 16 35 H 0.04 0.52 6.54 -51.93 -0.34 0.18 16 36 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.16 3.49 5.10 -52.49 -0.27 3.22 16 40 H 0.41 6.93 6.77 -34.47 -0.23 6.70 16 41 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.04 0.72 7.94 -51.93 -0.41 0.30 16 43 H 0.11 2.19 2.06 -51.93 -0.11 2.08 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 1.73 8.13 -51.92 -0.42 1.31 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -30.40 355.32 -10.90 -41.30 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -6.38 Total: 12.63 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -1.87 Total: -25.15 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -1.42 Total: -60.64 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -1.71 Total: -53.23 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.48 Total: 15.64 kcal Atomic # 16 Polarization: 64.48 SS G_CDS: -0.40 Total: 64.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.40 -10.90 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192971993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.276 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds