Wall clock time and date at job start Tue Mar 31 2020 22:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46955 * 110.99789 * 2 1 4 4 C 1.53059 * 109.36247 * 183.18718 * 3 2 1 5 5 N 1.46951 * 109.36415 * 301.59774 * 4 3 2 6 6 C 1.46899 * 110.99888 * 183.18761 * 5 4 3 7 7 C 1.50703 * 109.47218 * 163.41049 * 6 5 4 8 8 C 1.38122 * 120.03498 * 265.32923 * 7 6 5 9 9 C 1.38269 * 120.07214 * 180.02562 * 8 7 6 10 10 C 1.38308 * 120.14801 * 359.97438 * 9 8 7 11 11 C 1.38086 * 120.07609 * 359.74866 * 10 9 8 12 12 C 1.38888 * 120.03345 * 85.30797 * 7 6 5 13 13 N 1.39666 * 120.07828 * 0.02562 * 12 7 6 14 14 S 1.65604 * 119.99975 * 209.88168 * 13 12 7 15 15 O 1.42099 * 106.40233 * 172.27463 * 14 13 12 16 16 O 1.42094 * 106.40568 * 305.19398 * 14 13 12 17 17 C 1.76197 * 107.21567 * 58.73707 * 14 13 12 18 18 H 1.07997 * 120.00192 * 4.66928 * 17 14 13 19 19 C 1.37882 * 119.99988 * 184.67064 * 17 14 13 20 20 N 1.31514 * 119.99971 * 179.97438 * 19 17 14 21 21 Si 1.86793 * 120.00096 * 0.02562 * 19 17 14 22 22 H 1.48496 * 109.47278 * 89.99690 * 21 19 17 23 23 H 1.48500 * 109.47169 * 210.00261 * 21 19 17 24 24 H 1.48504 * 109.47161 * 329.99928 * 21 19 17 25 25 C 1.46955 * 110.88075 * 59.32306 * 5 4 3 26 26 C 1.46954 * 110.99988 * 123.79399 * 2 1 3 27 27 H 1.08992 * 109.47168 * 59.99898 * 1 2 3 28 28 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47199 * 300.00385 * 1 2 3 30 30 H 1.08996 * 109.49599 * 63.22419 * 3 2 1 31 31 H 1.08996 * 109.51105 * 303.16279 * 3 2 1 32 32 H 1.09001 * 109.48522 * 181.62708 * 4 3 2 33 33 H 1.09001 * 109.50007 * 61.57743 * 4 3 2 34 34 H 1.09000 * 109.47082 * 43.41094 * 6 5 4 35 35 H 1.08999 * 109.47306 * 283.41514 * 6 5 4 36 36 H 1.08001 * 119.96889 * 359.97438 * 8 7 6 37 37 H 1.07997 * 119.92466 * 179.97438 * 9 8 7 38 38 H 1.08000 * 119.96104 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.04012 * 180.27427 * 11 10 9 40 40 H 0.97004 * 120.00455 * 29.61071 * 13 12 7 41 41 H 0.97003 * 120.00296 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.49508 * 60.64539 * 25 5 4 43 43 H 1.09000 * 109.49082 * 180.71193 * 25 5 4 44 44 H 1.08999 * 109.49618 * 296.77886 * 26 2 1 45 45 H 1.09007 * 109.48525 * 56.82658 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5190 0.5659 1.0598 7 6 6.0214 0.1456 2.4170 8 6 6.3437 1.1008 3.3612 9 6 6.8052 0.7160 4.6065 10 6 6.9452 -0.6258 4.9113 11 6 6.6194 -1.5860 3.9739 12 6 6.1604 -1.2027 2.7198 13 7 5.8355 -2.1712 1.7674 14 16 5.2828 -3.6555 2.2509 15 8 4.8741 -4.3351 1.0718 16 8 6.2550 -4.1728 3.1488 17 6 3.8232 -3.3845 3.2001 18 1 3.4203 -2.3873 3.2984 19 6 3.1955 -4.4456 3.8175 20 7 2.1064 -4.2433 4.5264 21 14 3.8927 -6.1703 3.6482 22 1 4.8586 -6.4238 4.7472 23 1 2.7881 -7.1601 3.7216 24 1 4.5857 -6.2979 2.3410 25 6 3.5235 -0.8060 1.0598 26 6 1.9956 -0.7631 1.1401 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6938 1.8774 0.9173 31 1 1.6013 1.9132 -0.8600 32 1 3.9177 2.3449 -0.0513 33 1 3.8256 0.8481 -1.0106 34 1 5.8824 1.5681 0.8323 35 1 5.8824 -0.1321 0.3056 36 1 6.2359 2.1494 3.1263 37 1 7.0568 1.4649 5.3428 38 1 7.3063 -0.9230 5.8848 39 1 6.7247 -2.6337 4.2141 40 1 5.9299 -1.9731 0.8225 41 1 1.6645 -4.9898 4.9604 42 1 3.8253 -1.3115 0.1425 43 1 3.9178 -1.3469 1.9201 44 1 1.6938 -0.2819 2.0705 45 1 1.6010 -1.7788 1.1113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192971993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:31 Heat of formation + Delta-G solvation = -47.375803 kcal Electronic energy + Delta-G solvation = -29540.174437 eV Core-core repulsion = 25683.963153 eV Total energy + Delta-G solvation = -3856.211284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.67 seconds Orbital eigenvalues (eV) -41.10827 -39.73382 -37.90031 -36.70127 -36.57833 -35.88846 -35.21477 -32.64007 -31.84681 -30.19784 -29.15382 -28.57600 -26.23058 -24.67263 -24.09728 -23.53361 -21.95543 -21.13390 -20.75445 -19.63547 -18.82993 -18.66005 -17.32682 -17.18722 -16.82366 -16.30336 -16.10645 -15.99261 -15.79895 -15.64369 -15.51888 -15.27328 -15.14046 -14.94102 -14.65760 -14.04524 -13.83950 -13.69726 -13.52981 -13.32685 -13.17070 -13.03859 -12.97470 -12.83913 -12.69411 -12.42899 -12.38989 -12.21011 -12.16086 -11.90819 -11.73876 -11.51905 -11.42085 -11.36344 -11.05137 -9.68139 -9.42158 -9.24987 -9.00563 -8.95715 -7.52854 -0.15063 0.50950 0.61083 1.01685 1.09677 1.15452 1.84477 2.28153 2.40804 2.76301 2.98567 3.09633 3.21955 3.82623 3.92545 3.96584 3.99819 4.10571 4.12887 4.20683 4.28994 4.34871 4.43627 4.45982 4.57993 4.61087 4.64735 4.68952 4.78038 4.87514 4.88079 4.92658 4.96532 5.08623 5.09702 5.13770 5.28529 5.36677 5.45699 5.70332 5.75473 5.93403 5.94743 5.98253 6.05622 6.17455 6.20656 6.30044 6.52131 8.19827 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009794 B = 0.006424 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.142618 B = 4357.851384 C = 6089.218367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.554 5.554 3 C 0.056 3.944 4 C 0.054 3.946 5 N -0.536 5.536 6 C 0.099 3.901 7 C -0.115 4.115 8 C -0.075 4.075 9 C -0.141 4.141 10 C -0.097 4.097 11 C -0.201 4.201 12 C 0.163 3.837 13 N -1.048 6.048 14 S 2.681 3.319 15 O -1.021 7.021 16 O -1.018 7.018 17 C -1.015 5.015 18 H 0.118 0.882 19 C 0.121 3.879 20 N -0.839 5.839 21 Si 0.824 3.176 22 H -0.238 1.238 23 H -0.221 1.221 24 H -0.247 1.247 25 C 0.044 3.956 26 C 0.066 3.934 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.035 0.965 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.120 0.880 35 H 0.039 0.961 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.422 0.578 41 H 0.291 0.709 42 H 0.029 0.971 43 H 0.083 0.917 44 H 0.025 0.975 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 15.084 -5.687 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.280 5.280 3 C -0.072 4.072 4 C -0.073 4.073 5 N -0.261 5.261 6 C -0.028 4.028 7 C -0.120 4.120 8 C -0.094 4.094 9 C -0.160 4.160 10 C -0.116 4.116 11 C -0.222 4.222 12 C 0.066 3.934 13 N -0.797 5.797 14 S 2.783 3.217 15 O -1.011 7.011 16 O -1.008 7.008 17 C -1.149 5.149 18 H 0.135 0.865 19 C -0.097 4.097 20 N -0.469 5.469 21 Si 0.643 3.357 22 H -0.161 1.161 23 H -0.143 1.143 24 H -0.170 1.170 25 C -0.084 4.084 26 C -0.063 4.063 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.058 0.942 34 H 0.138 0.862 35 H 0.057 0.943 36 H 0.175 0.825 37 H 0.173 0.827 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.260 0.740 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.101 0.899 44 H 0.044 0.956 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.829 14.087 -5.696 15.670 hybrid contribution -0.618 -1.102 0.143 1.272 sum 3.211 12.985 -5.553 14.483 Atomic orbital electron populations 1.22385 0.86328 1.02130 1.01399 1.62220 1.08883 1.14809 1.42040 1.22272 0.94883 0.88452 1.01566 1.22330 0.94399 0.99383 0.91216 1.62185 1.07270 1.13058 1.43539 1.21000 0.86773 1.02849 0.92195 1.19725 1.03090 0.90558 0.98629 1.21173 0.96298 0.99752 0.92169 1.21447 1.01246 0.95627 0.97705 1.21229 0.98330 0.93184 0.98831 1.21929 1.03140 1.02705 0.94453 1.17502 0.97791 0.88995 0.89118 1.53177 1.79415 1.31842 1.15235 1.01187 0.75628 0.71033 0.73825 1.93454 1.84300 1.72109 1.51276 1.93322 1.63436 1.78172 1.65859 1.30516 1.30742 1.04619 1.49036 0.86460 1.24926 0.93233 1.00912 0.90662 1.69987 1.16001 1.34871 1.26026 0.87504 0.82381 0.83255 0.82572 1.16102 1.14316 1.17015 1.22529 0.94478 0.90432 1.00983 1.21947 0.95008 0.97775 0.91527 0.89035 0.92208 0.95715 0.94665 0.87870 0.87160 0.94194 0.86226 0.94285 0.82499 0.82699 0.84216 0.84990 0.74027 0.89783 0.95290 0.89949 0.95638 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.60 127.69 1.23 1.86 16 2 N -0.55 -16.41 4.97 -921.94 -4.58 -20.99 16 3 C 0.06 1.30 5.62 86.31 0.49 1.78 16 4 C 0.05 1.20 5.58 86.31 0.48 1.68 16 5 N -0.54 -15.31 4.65 -900.27 -4.19 -19.50 16 6 C 0.10 2.47 4.95 85.56 0.42 2.89 16 7 C -0.12 -3.44 5.19 -19.74 -0.10 -3.54 16 8 C -0.08 -1.84 9.68 22.25 0.22 -1.62 16 9 C -0.14 -3.51 10.04 22.29 0.22 -3.28 16 10 C -0.10 -3.02 10.04 22.25 0.22 -2.79 16 11 C -0.20 -7.91 9.23 22.40 0.21 -7.70 16 12 C 0.16 6.10 5.29 38.22 0.20 6.30 16 13 N -1.05 -41.94 3.45 -51.37 -0.18 -42.12 16 14 S 2.68 135.22 3.72 -56.49 -0.21 135.01 16 15 O -1.02 -55.21 16.53 -128.00 -2.12 -57.33 16 16 O -1.02 -54.00 13.46 -128.00 -1.72 -55.72 16 17 C -1.02 -55.91 9.27 67.74 0.63 -55.28 16 18 H 0.12 6.67 6.45 -2.91 -0.02 6.65 16 19 C 0.12 6.80 5.47 84.66 0.46 7.26 16 20 N -0.84 -47.23 13.96 21.45 0.30 -46.93 16 21 Si 0.82 41.24 26.34 68.60 1.81 43.05 16 22 H -0.24 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.22 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.25 -12.86 5.86 99.48 0.58 -12.28 16 25 C 0.04 1.63 4.29 86.31 0.37 2.00 16 26 C 0.07 2.46 5.62 86.31 0.49 2.95 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 29 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.11 1.72 8.02 -2.39 -0.02 1.70 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 2.08 7.81 -2.39 -0.02 2.06 16 35 H 0.04 0.98 6.54 -2.39 -0.02 0.96 16 36 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.13 5.99 5.10 -2.91 -0.01 5.97 16 40 H 0.42 14.58 6.77 -96.74 -0.65 13.92 16 41 H 0.29 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.03 1.09 7.94 -2.39 -0.02 1.07 16 43 H 0.08 3.48 2.06 -2.39 0.00 3.48 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 2.48 8.13 -2.38 -0.02 2.46 16 Total: -1.00 -69.36 355.32 -5.12 -74.48 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: 0.24 Total: 37.55 kcal Atomic # 6 Polarization: -53.04 SS G_CDS: 5.53 Total: -47.50 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -8.64 Total: -129.54 kcal Atomic # 8 Polarization: -109.21 SS G_CDS: -3.84 Total: -113.05 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.81 Total: 43.05 kcal Atomic # 16 Polarization: 135.22 SS G_CDS: -0.21 Total: 135.01 kcal Total: -69.36 -5.12 -74.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192971993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.102 kcal (2) G-P(sol) polarization free energy of solvation -69.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.67 seconds