Wall clock time and date at job start Tue Mar 31 2020 22:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 109.47535 * 2 1 4 4 C 1.46950 * 111.00335 * 189.99954 * 3 2 1 5 5 C 1.53060 * 109.36688 * 183.18767 * 4 3 2 6 6 N 1.46952 * 109.36275 * 301.59933 * 5 4 3 7 7 C 1.39996 * 111.00021 * 183.18573 * 6 5 4 8 8 C 1.38861 * 120.00111 * 179.97438 * 7 6 5 9 9 C 1.38096 * 120.00094 * 179.97438 * 8 7 6 10 10 C 1.38858 * 119.99796 * 0.02562 * 9 8 7 11 11 N 1.40003 * 120.00216 * 179.97438 * 10 9 8 12 12 S 1.65590 * 120.00187 * 133.82153 * 11 10 9 13 13 O 1.42103 * 106.40378 * 51.98537 * 12 11 10 14 14 O 1.42100 * 106.40378 * 184.90196 * 12 11 10 15 15 C 1.76199 * 107.22100 * 298.44557 * 12 11 10 16 16 H 1.08002 * 119.99681 * 359.02531 * 15 12 11 17 17 C 1.37877 * 120.00093 * 179.02940 * 15 12 11 18 18 N 1.31514 * 120.00258 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99837 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47074 * 59.99464 * 19 17 15 21 21 H 1.48504 * 109.47027 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47044 * 299.99616 * 19 17 15 23 23 C 1.38862 * 120.00380 * 0.25247 * 10 9 8 24 24 C 1.38097 * 119.99724 * 359.51065 * 23 10 9 25 25 C 1.46960 * 110.88118 * 59.31950 * 6 5 4 26 26 C 1.46965 * 111.00056 * 313.80268 * 3 2 1 27 27 H 1.08997 * 109.47090 * 59.99791 * 1 2 3 28 28 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46881 * 299.99988 * 1 2 3 30 30 H 1.08999 * 109.46945 * 239.99507 * 2 1 3 31 31 H 1.09007 * 109.46906 * 120.00257 * 2 1 3 32 32 H 1.08997 * 109.49034 * 63.22399 * 4 3 2 33 33 H 1.09002 * 109.49021 * 303.15288 * 4 3 2 34 34 H 1.08998 * 109.48494 * 181.63127 * 5 4 3 35 35 H 1.08999 * 109.48453 * 61.56521 * 5 4 3 36 36 H 1.07998 * 119.99928 * 0.02562 * 8 7 6 37 37 H 1.07994 * 120.00072 * 180.02562 * 9 8 7 38 38 H 0.97001 * 119.99655 * 314.10122 * 11 10 9 39 39 H 0.96999 * 120.00075 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.00403 * 179.72878 * 23 10 9 41 41 H 1.07998 * 120.00338 * 180.25505 * 24 23 10 42 42 H 1.08992 * 109.49077 * 60.64662 * 25 6 5 43 43 H 1.09002 * 109.49088 * 180.71368 * 25 6 5 44 44 H 1.09001 * 109.48204 * 296.77869 * 26 3 2 45 45 H 1.08993 * 109.48692 * 56.83868 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4691 1.4310 -0.2382 5 6 3.9518 2.8809 -0.1517 6 7 3.2321 3.6940 -1.1419 7 6 3.6988 5.0139 -1.1419 8 6 3.1458 5.9458 -2.0103 9 6 3.6058 7.2479 -2.0099 10 6 4.6216 7.6251 -1.1415 11 7 5.0883 8.9451 -1.1415 12 16 5.3076 9.7457 0.2913 13 8 6.1134 8.9024 1.1030 14 8 5.6700 11.0780 -0.0448 15 6 3.7354 9.8419 1.0811 16 1 2.8625 9.4276 0.5985 17 6 3.6196 10.4461 2.3150 18 7 4.6826 10.9501 2.9028 19 14 1.9526 10.5486 3.1519 20 1 1.4241 9.1784 3.3721 21 1 2.0964 11.2393 4.4586 22 1 1.0122 11.3093 2.2903 23 6 5.1785 6.6919 -0.2772 24 6 4.7152 5.3909 -0.2741 25 6 1.7827 3.6479 -0.9037 26 6 1.3000 2.1981 -0.9902 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.6875 1.0337 -1.2294 33 1 3.9807 0.8319 0.5151 34 1 5.0216 2.9208 -0.3567 35 1 3.7579 3.2696 0.8480 36 1 2.3555 5.6525 -2.6853 37 1 3.1755 7.9728 -2.6849 38 1 5.2794 9.3919 -1.9810 39 1 4.6010 11.3755 3.7707 40 1 5.9715 6.9842 0.3951 41 1 5.1454 4.6660 0.4010 42 1 1.5642 4.0453 0.0874 43 1 1.2710 4.2470 -1.6570 44 1 1.4938 1.8093 -1.9899 45 1 0.2303 2.1580 -0.7852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:24 Heat of formation + Delta-G solvation = -41.603692 kcal Electronic energy + Delta-G solvation = -27603.276611 eV Core-core repulsion = 23747.315624 eV Total energy + Delta-G solvation = -3855.960986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.33236 -38.60535 -36.34255 -35.28161 -34.07257 -33.58610 -33.06151 -31.73669 -31.00212 -30.22180 -27.86238 -26.15707 -25.63442 -24.26692 -22.56669 -21.62821 -21.11333 -19.83861 -19.08207 -17.79789 -17.37653 -16.82424 -16.26569 -15.61689 -15.47007 -15.27799 -15.09969 -14.96956 -14.76586 -14.15113 -13.94072 -13.81785 -13.58014 -13.46215 -13.19108 -12.71104 -12.41834 -12.22454 -12.17652 -12.05612 -11.95726 -11.53168 -11.44641 -11.30493 -11.20934 -11.11869 -11.00379 -10.74960 -10.63721 -10.55219 -10.41111 -10.16830 -9.93504 -9.25726 -9.09141 -8.77288 -8.58564 -8.56542 -7.28090 -6.72401 -5.34741 1.64731 1.77378 2.24730 3.08510 3.12386 3.18535 3.59087 3.71203 4.04267 4.16315 4.58713 4.60555 4.64172 4.67787 4.81074 4.88711 5.05243 5.12586 5.14932 5.20946 5.23764 5.29084 5.33211 5.46379 5.56032 5.63761 5.64738 5.71381 5.72238 5.79724 5.80691 5.84128 5.85820 5.93620 6.17190 6.40363 6.46185 6.56945 6.71777 6.76372 6.78580 7.03334 7.07591 7.15865 7.30459 7.48371 7.87652 7.95000 8.86487 10.21452 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003049 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.529698 B = 9182.347856 C =10133.731208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.058 3.942 5 C 0.051 3.949 6 N -0.489 5.489 7 C 0.080 3.920 8 C -0.123 4.123 9 C -0.120 4.120 10 C 0.157 3.843 11 N -1.076 6.076 12 S 2.708 3.292 13 O -0.997 6.997 14 O -1.001 7.001 15 C -1.013 5.013 16 H 0.103 0.897 17 C 0.135 3.865 18 N -0.845 5.845 19 Si 0.921 3.079 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.119 4.119 24 C -0.144 4.144 25 C 0.057 3.943 26 C 0.052 3.948 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.410 0.590 39 H 0.292 0.708 40 H 0.159 0.841 41 H 0.127 0.873 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 -19.349 -7.856 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.076 4.076 3 N -0.267 5.267 4 C -0.070 4.070 5 C -0.077 4.077 6 N -0.205 5.205 7 C -0.017 4.017 8 C -0.144 4.144 9 C -0.143 4.143 10 C 0.059 3.941 11 N -0.821 5.821 12 S 2.809 3.191 13 O -0.987 6.987 14 O -0.991 6.991 15 C -1.147 5.147 16 H 0.121 0.879 17 C -0.084 4.084 18 N -0.475 5.475 19 Si 0.744 3.256 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.141 4.141 24 C -0.165 4.165 25 C -0.069 4.069 26 C -0.076 4.076 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.243 0.757 39 H 0.102 0.898 40 H 0.176 0.824 41 H 0.145 0.855 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.112 -19.012 -7.231 21.239 hybrid contribution -1.383 0.172 -0.012 1.394 sum -7.495 -18.840 -7.243 21.531 Atomic orbital electron populations 1.21941 0.94991 1.01900 1.02634 1.22069 0.95803 0.88975 1.00765 1.62241 1.04145 1.10802 1.49527 1.22186 0.87965 0.96545 1.00347 1.22342 0.98671 0.92214 0.94449 1.59487 1.04681 1.08574 1.47802 1.18818 0.97921 0.88215 0.96730 1.20470 1.01800 0.92332 0.99803 1.21001 0.96121 0.96158 1.00998 1.17376 0.94169 0.84169 0.98340 1.54015 1.81146 1.20141 1.26801 1.00780 0.76423 0.71599 0.70292 1.93312 1.70653 1.68379 1.66323 1.93389 1.85521 1.36894 1.83296 1.30384 1.17238 1.51628 1.15447 0.87894 1.24720 0.98993 0.89670 0.94970 1.69879 1.29999 1.30844 1.16785 0.86193 0.81631 0.79420 0.78314 1.18795 1.20067 1.18808 1.21831 1.00627 0.91766 0.99837 1.21117 0.99873 0.96512 0.99035 1.22321 0.86667 0.96368 1.01540 1.22304 0.98788 0.92766 0.93766 0.92302 0.92198 0.91658 0.94937 0.90648 0.93954 0.90030 0.89393 0.92510 0.86067 0.85679 0.75668 0.89770 0.82398 0.85513 0.92871 0.89651 0.94036 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.18 37.16 0.34 -0.69 16 2 C 0.05 0.40 6.00 -3.83 -0.02 0.37 16 3 N -0.54 -5.23 4.86 -234.47 -1.14 -6.36 16 4 C 0.06 0.55 5.58 -3.77 -0.02 0.53 16 5 C 0.05 0.57 4.30 -3.76 -0.02 0.55 16 6 N -0.49 -6.12 4.76 -170.88 -0.81 -6.93 16 7 C 0.08 1.19 5.65 -83.67 -0.47 0.71 16 8 C -0.12 -1.77 9.19 -39.40 -0.36 -2.14 16 9 C -0.12 -1.92 9.96 -39.40 -0.39 -2.31 16 10 C 0.16 2.97 6.14 -83.66 -0.51 2.46 16 11 N -1.08 -21.69 5.78 32.46 0.19 -21.50 16 12 S 2.71 70.84 4.92 -107.50 -0.53 70.32 16 13 O -1.00 -27.95 15.16 -57.17 -0.87 -28.82 16 14 O -1.00 -28.89 18.02 -57.17 -1.03 -29.92 16 15 C -1.01 -27.81 9.61 30.60 0.29 -27.51 16 16 H 0.10 2.64 7.81 -52.49 -0.41 2.23 16 17 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 18 N -0.85 -24.64 13.19 55.43 0.73 -23.91 16 19 Si 0.92 20.67 29.54 -169.99 -5.02 15.65 16 20 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 22 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.12 -2.29 9.22 -39.40 -0.36 -2.65 16 24 C -0.14 -2.34 8.82 -39.40 -0.35 -2.69 16 25 C 0.06 0.64 5.38 -3.77 -0.02 0.62 16 26 C 0.05 0.49 4.93 -3.76 -0.02 0.47 16 27 H 0.06 0.38 6.26 -51.93 -0.33 0.05 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.93 7.17 -51.93 -0.37 0.56 16 35 H 0.06 0.70 7.58 -51.93 -0.39 0.31 16 36 H 0.12 1.45 7.18 -52.49 -0.38 1.07 16 37 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.41 6.93 8.96 -34.46 -0.31 6.62 16 39 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.16 3.36 5.72 -52.49 -0.30 3.06 16 41 H 0.13 1.80 5.81 -52.49 -0.30 1.49 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.88 6.82 -51.93 -0.35 0.52 16 44 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.71 5.99 -51.93 -0.31 0.40 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -34.13 367.70 -11.35 -45.47 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.39 Total: 9.10 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: -2.01 Total: -28.64 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -1.03 Total: -58.70 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -1.90 Total: -58.74 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 70.84 SS G_CDS: -0.53 Total: 70.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.13 -11.35 -45.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.871 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds