Wall clock time and date at job start Tue Mar 31 2020 22:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 109.47535 * 2 1 4 4 C 1.46950 * 111.00335 * 189.99954 * 3 2 1 5 5 C 1.53060 * 109.36688 * 183.18767 * 4 3 2 6 6 N 1.46952 * 109.36275 * 301.59933 * 5 4 3 7 7 C 1.39996 * 111.00021 * 183.18573 * 6 5 4 8 8 C 1.38861 * 120.00111 * 179.97438 * 7 6 5 9 9 C 1.38096 * 120.00094 * 179.97438 * 8 7 6 10 10 C 1.38858 * 119.99796 * 0.02562 * 9 8 7 11 11 N 1.40003 * 120.00216 * 179.97438 * 10 9 8 12 12 S 1.65590 * 120.00187 * 133.82153 * 11 10 9 13 13 O 1.42103 * 106.40378 * 51.98537 * 12 11 10 14 14 O 1.42100 * 106.40378 * 184.90196 * 12 11 10 15 15 C 1.76199 * 107.22100 * 298.44557 * 12 11 10 16 16 H 1.08002 * 119.99681 * 359.02531 * 15 12 11 17 17 C 1.37877 * 120.00093 * 179.02940 * 15 12 11 18 18 N 1.31514 * 120.00258 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99837 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47074 * 59.99464 * 19 17 15 21 21 H 1.48504 * 109.47027 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47044 * 299.99616 * 19 17 15 23 23 C 1.38862 * 120.00380 * 0.25247 * 10 9 8 24 24 C 1.38097 * 119.99724 * 359.51065 * 23 10 9 25 25 C 1.46960 * 110.88118 * 59.31950 * 6 5 4 26 26 C 1.46965 * 111.00056 * 313.80268 * 3 2 1 27 27 H 1.08997 * 109.47090 * 59.99791 * 1 2 3 28 28 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46881 * 299.99988 * 1 2 3 30 30 H 1.08999 * 109.46945 * 239.99507 * 2 1 3 31 31 H 1.09007 * 109.46906 * 120.00257 * 2 1 3 32 32 H 1.08997 * 109.49034 * 63.22399 * 4 3 2 33 33 H 1.09002 * 109.49021 * 303.15288 * 4 3 2 34 34 H 1.08998 * 109.48494 * 181.63127 * 5 4 3 35 35 H 1.08999 * 109.48453 * 61.56521 * 5 4 3 36 36 H 1.07998 * 119.99928 * 0.02562 * 8 7 6 37 37 H 1.07994 * 120.00072 * 180.02562 * 9 8 7 38 38 H 0.97001 * 119.99655 * 314.10122 * 11 10 9 39 39 H 0.96999 * 120.00075 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.00403 * 179.72878 * 23 10 9 41 41 H 1.07998 * 120.00338 * 180.25505 * 24 23 10 42 42 H 1.08992 * 109.49077 * 60.64662 * 25 6 5 43 43 H 1.09002 * 109.49088 * 180.71368 * 25 6 5 44 44 H 1.09001 * 109.48204 * 296.77869 * 26 3 2 45 45 H 1.08993 * 109.48692 * 56.83868 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4691 1.4310 -0.2382 5 6 3.9518 2.8809 -0.1517 6 7 3.2321 3.6940 -1.1419 7 6 3.6988 5.0139 -1.1419 8 6 3.1458 5.9458 -2.0103 9 6 3.6058 7.2479 -2.0099 10 6 4.6216 7.6251 -1.1415 11 7 5.0883 8.9451 -1.1415 12 16 5.3076 9.7457 0.2913 13 8 6.1134 8.9024 1.1030 14 8 5.6700 11.0780 -0.0448 15 6 3.7354 9.8419 1.0811 16 1 2.8625 9.4276 0.5985 17 6 3.6196 10.4461 2.3150 18 7 4.6826 10.9501 2.9028 19 14 1.9526 10.5486 3.1519 20 1 1.4241 9.1784 3.3721 21 1 2.0964 11.2393 4.4586 22 1 1.0122 11.3093 2.2903 23 6 5.1785 6.6919 -0.2772 24 6 4.7152 5.3909 -0.2741 25 6 1.7827 3.6479 -0.9037 26 6 1.3000 2.1981 -0.9902 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.6875 1.0337 -1.2294 33 1 3.9807 0.8319 0.5151 34 1 5.0216 2.9208 -0.3567 35 1 3.7579 3.2696 0.8480 36 1 2.3555 5.6525 -2.6853 37 1 3.1755 7.9728 -2.6849 38 1 5.2794 9.3919 -1.9810 39 1 4.6010 11.3755 3.7707 40 1 5.9715 6.9842 0.3951 41 1 5.1454 4.6660 0.4010 42 1 1.5642 4.0453 0.0874 43 1 1.2710 4.2470 -1.6570 44 1 1.4938 1.8093 -1.9899 45 1 0.2303 2.1580 -0.7852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:23 Heat of formation + Delta-G solvation = -68.485644 kcal Electronic energy + Delta-G solvation = -27604.442299 eV Core-core repulsion = 23747.315624 eV Total energy + Delta-G solvation = -3857.126675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37755 -39.67477 -37.59809 -37.22534 -36.22746 -35.26271 -34.77369 -32.67572 -31.89679 -31.29695 -28.94454 -28.28358 -26.61552 -25.20404 -23.50046 -22.80810 -22.08515 -21.08708 -20.72128 -19.50841 -18.78333 -18.28808 -18.04440 -17.00862 -16.59531 -16.40764 -16.06208 -15.97151 -15.91861 -15.70903 -15.61455 -14.99580 -14.94274 -14.47685 -14.28241 -14.02905 -13.89628 -13.49249 -13.38397 -13.25191 -13.02296 -12.90004 -12.80850 -12.59391 -12.53121 -12.44276 -12.34262 -12.27586 -12.09877 -11.93912 -11.75890 -11.55705 -11.40450 -11.25552 -10.97395 -10.21160 -9.86891 -9.27817 -8.81350 -8.52302 -7.50603 0.08863 0.47544 0.53992 1.32121 1.34399 1.47248 2.18415 2.55842 2.61972 2.81061 2.92619 2.96863 3.59694 3.80178 3.93761 4.01402 4.03756 4.15303 4.25426 4.26862 4.32369 4.41813 4.44582 4.48286 4.51355 4.56067 4.62227 4.69830 4.76088 4.82369 4.86785 4.90998 5.02119 5.07245 5.15537 5.18634 5.22451 5.29826 5.33465 5.38573 5.63386 5.76558 5.87550 5.99031 6.10320 6.12430 6.24876 6.44379 6.75599 8.18429 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003049 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.529698 B = 9182.347856 C =10133.731208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 N -0.557 5.557 4 C 0.063 3.937 5 C 0.047 3.953 6 N -0.486 5.486 7 C 0.090 3.910 8 C -0.116 4.116 9 C -0.112 4.112 10 C 0.123 3.877 11 N -1.062 6.062 12 S 2.715 3.285 13 O -1.027 7.027 14 O -1.038 7.038 15 C -1.032 5.032 16 H 0.116 0.884 17 C 0.074 3.926 18 N -0.892 5.892 19 Si 0.987 3.013 20 H -0.253 1.253 21 H -0.262 1.262 22 H -0.249 1.249 23 C -0.145 4.145 24 C -0.151 4.151 25 C 0.055 3.945 26 C 0.057 3.943 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.424 0.576 39 H 0.300 0.700 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.036 0.964 43 H 0.099 0.901 44 H 0.045 0.955 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 -21.467 -8.935 25.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.076 4.076 3 N -0.283 5.283 4 C -0.065 4.065 5 C -0.080 4.080 6 N -0.202 5.202 7 C -0.008 4.008 8 C -0.137 4.137 9 C -0.134 4.134 10 C 0.027 3.973 11 N -0.812 5.812 12 S 2.818 3.182 13 O -1.017 7.017 14 O -1.028 7.028 15 C -1.166 5.166 16 H 0.134 0.866 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.805 3.195 20 H -0.177 1.177 21 H -0.185 1.185 22 H -0.172 1.172 23 C -0.167 4.167 24 C -0.172 4.172 25 C -0.071 4.071 26 C -0.071 4.071 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.260 0.740 39 H 0.110 0.890 40 H 0.145 0.855 41 H 0.157 0.843 42 H 0.054 0.946 43 H 0.117 0.883 44 H 0.063 0.937 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.116 -21.145 -8.330 24.486 hybrid contribution -0.431 0.651 0.242 0.817 sum -9.547 -20.494 -8.087 24.011 Atomic orbital electron populations 1.21915 0.94141 1.02718 1.02350 1.22118 0.96494 0.87847 1.01127 1.62256 1.04132 1.12067 1.49803 1.22138 0.88268 0.95170 1.00901 1.22411 0.98967 0.93221 0.93391 1.59544 1.05677 1.07050 1.47922 1.19033 0.96777 0.89395 0.95578 1.20838 1.01872 0.91399 0.99585 1.21253 0.94645 0.97410 1.00092 1.17605 0.96251 0.83104 1.00385 1.53259 1.81567 1.20766 1.25577 1.00219 0.76205 0.70841 0.70979 1.93279 1.71528 1.68736 1.68134 1.93326 1.86105 1.39180 1.84205 1.30715 1.18041 1.51696 1.16150 0.86573 1.25951 1.03433 0.88856 0.95707 1.69969 1.32590 1.32031 1.17708 0.85206 0.76253 0.80189 0.77841 1.17721 1.18546 1.17223 1.21709 1.01032 0.93490 1.00419 1.21240 1.00585 0.95577 0.99804 1.22428 0.85587 0.98025 1.01032 1.22280 0.99468 0.91410 0.93907 0.91988 0.90912 0.92451 0.94470 0.90357 0.93759 0.88793 0.89083 0.93844 0.82638 0.83151 0.73963 0.89010 0.85528 0.84314 0.94555 0.88250 0.93699 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.18 71.98 0.66 -0.96 16 2 C 0.05 0.66 6.00 86.30 0.52 1.17 16 3 N -0.56 -9.42 4.86 -895.72 -4.35 -13.78 16 4 C 0.06 1.07 5.58 86.31 0.48 1.55 16 5 C 0.05 1.00 4.30 86.31 0.37 1.37 16 6 N -0.49 -11.06 4.76 -694.56 -3.31 -14.37 16 7 C 0.09 2.50 5.65 38.14 0.22 2.71 16 8 C -0.12 -3.00 9.19 22.39 0.21 -2.80 16 9 C -0.11 -3.33 9.96 22.38 0.22 -3.11 16 10 C 0.12 4.66 6.14 38.13 0.23 4.90 16 11 N -1.06 -43.64 5.78 -51.23 -0.30 -43.94 16 12 S 2.72 147.28 4.92 -56.49 -0.28 147.00 16 13 O -1.03 -60.68 15.16 -128.00 -1.94 -62.62 16 14 O -1.04 -62.21 18.02 -128.00 -2.31 -64.51 16 15 C -1.03 -57.39 9.61 67.73 0.65 -56.74 16 16 H 0.12 5.92 7.81 -2.91 -0.02 5.90 16 17 C 0.07 4.12 5.46 84.65 0.46 4.59 16 18 N -0.89 -53.25 13.19 21.45 0.28 -52.96 16 19 Si 0.99 41.63 29.54 68.60 2.03 43.66 16 20 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 23 C -0.14 -5.74 9.22 22.39 0.21 -5.53 16 24 C -0.15 -4.89 8.82 22.39 0.20 -4.70 16 25 C 0.05 1.08 5.38 86.31 0.46 1.55 16 26 C 0.06 0.91 4.93 86.31 0.43 1.33 16 27 H 0.06 0.61 6.26 -2.39 -0.01 0.60 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.04 0.45 8.08 -2.39 -0.02 0.43 16 31 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.83 7.17 -2.39 -0.02 1.81 16 35 H 0.04 1.04 7.58 -2.39 -0.02 1.02 16 36 H 0.16 2.97 7.18 -2.91 -0.02 2.95 16 37 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.42 14.50 8.96 -96.75 -0.87 13.64 16 39 H 0.30 16.09 8.31 -92.71 -0.77 15.32 16 40 H 0.13 5.79 5.72 -2.91 -0.02 5.77 16 41 H 0.14 3.99 5.81 -2.91 -0.02 3.98 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.10 1.67 6.82 -2.39 -0.02 1.65 16 44 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.10 1.34 5.99 -2.39 -0.01 1.32 16 Total: -1.00 -75.88 367.70 -4.71 -80.58 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.15 Total: 35.60 kcal Atomic # 6 Polarization: -59.98 SS G_CDS: 5.32 Total: -54.66 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -7.67 Total: -125.05 kcal Atomic # 8 Polarization: -122.88 SS G_CDS: -4.25 Total: -127.13 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 147.28 SS G_CDS: -0.28 Total: 147.00 kcal Total: -75.88 -4.71 -80.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.098 kcal (2) G-P(sol) polarization free energy of solvation -75.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds