Wall clock time and date at job start Tue Mar 31 2020 23:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47237 * 155.65819 * 3 2 1 5 5 C 1.34776 * 120.00011 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00144 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99718 * 180.02562 * 5 4 3 8 8 N 1.46901 * 109.46750 * 179.97438 * 7 5 4 9 9 C 1.48183 * 111.07843 * 70.71092 * 8 7 5 10 10 C 1.53929 * 86.22638 * 137.45871 * 9 8 7 11 11 C 1.47963 * 110.99766 * 170.00050 * 8 7 5 12 12 H 1.09000 * 113.76009 * 336.84480 * 11 8 7 13 13 C 1.52998 * 113.76031 * 108.09744 * 11 8 7 14 14 N 1.46505 * 109.47470 * 303.02187 * 13 11 8 15 15 C 1.46500 * 119.99756 * 270.00188 * 14 13 11 16 16 C 1.34771 * 120.00116 * 89.99486 * 14 13 11 17 17 O 1.21288 * 119.99896 * 0.02562 * 16 14 13 18 18 C 1.50703 * 120.00048 * 180.02562 * 16 14 13 19 19 S 1.81000 * 109.46826 * 180.02562 * 18 16 14 20 20 C 1.76205 * 99.99509 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00431 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99884 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99752 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 180.27840 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71945 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72142 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72250 * 24 22 20 28 28 H 4.40641 * 5.51424 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.47423 * 35.65587 * 3 2 1 30 30 H 1.08996 * 109.47232 * 275.65904 * 3 2 1 31 31 H 0.96992 * 119.99847 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.47052 * 59.99890 * 7 5 4 33 33 H 1.08996 * 109.47171 * 299.99930 * 7 5 4 34 34 H 1.08998 * 113.65487 * 23.13361 * 9 8 7 35 35 H 1.08998 * 113.82615 * 251.80905 * 9 8 7 36 36 H 1.09003 * 113.73414 * 222.01137 * 10 9 8 37 37 H 1.08997 * 113.73496 * 90.72772 * 10 9 8 38 38 H 1.09000 * 109.47145 * 183.02022 * 13 11 8 39 39 H 1.09007 * 109.47138 * 63.02086 * 13 11 8 40 40 H 1.08996 * 109.46996 * 269.99683 * 15 14 13 41 41 H 1.09003 * 109.47400 * 29.99677 * 15 14 13 42 42 H 1.09003 * 109.46993 * 149.99446 * 15 14 13 43 43 H 1.09000 * 109.46926 * 60.00592 * 18 16 14 44 44 H 1.09001 * 109.47144 * 300.00330 * 18 16 14 45 45 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.2594 -0.5693 5 6 4.4587 1.4841 -0.6713 6 8 5.2472 0.6446 -0.2914 7 6 4.9604 2.7791 -1.2564 8 7 6.4295 2.7796 -1.2565 9 6 6.9627 1.8262 -2.2577 10 6 7.9818 2.9245 -2.6109 11 6 6.9592 3.9208 -2.0353 12 1 6.2600 4.3094 -2.7757 13 6 7.5858 5.0180 -1.1726 14 7 6.5992 5.4998 -0.2026 15 6 5.7165 6.6166 -0.5489 16 6 6.5035 4.9156 1.0081 17 8 7.2345 3.9912 1.2949 18 6 5.4883 5.4109 2.0057 19 16 5.6062 4.4317 3.5233 20 6 4.3457 5.2025 4.4834 21 1 3.7793 6.0244 4.0711 22 6 4.0807 4.7534 5.7698 23 7 4.7708 3.7513 6.2722 24 14 2.7392 5.5654 6.7847 25 1 3.3206 6.6846 7.5687 26 1 1.6838 6.0897 5.8813 27 1 2.1468 4.5675 7.7113 28 1 -1.0502 -0.0003 0.0003 29 1 3.0097 -0.8342 -0.5990 30 1 3.0093 -0.1005 1.0226 31 1 2.5032 1.9306 -0.8735 32 1 4.5972 3.6136 -0.6567 33 1 4.5966 2.8809 -2.2788 34 1 6.2633 1.6008 -3.0628 35 1 7.4119 0.9343 -1.8209 36 1 8.1505 3.0385 -3.6817 37 1 8.9069 2.8652 -2.0377 38 1 7.9029 5.8440 -1.8091 39 1 8.4492 4.6151 -0.6430 40 1 6.1888 7.5558 -0.2607 41 1 5.5346 6.6163 -1.6236 42 1 4.7695 6.5087 -0.0200 43 1 4.4875 5.3112 1.5854 44 1 5.6840 6.4587 2.2336 45 1 4.5854 3.4372 7.1711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:45 Heat of formation + Delta-G solvation = 37.857976 kcal Electronic energy + Delta-G solvation = -27641.365200 eV Core-core repulsion = 23788.849931 eV Total energy + Delta-G solvation = -3852.515270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61015 -39.25645 -38.47683 -35.43396 -35.00309 -32.71893 -32.37571 -31.38597 -30.08861 -27.98128 -27.45249 -26.18480 -25.41571 -24.56035 -23.27918 -20.53294 -19.70859 -19.09321 -18.78198 -17.57923 -16.91510 -16.67311 -16.26710 -16.13696 -15.67556 -15.41755 -15.29192 -14.76406 -14.51809 -14.28842 -13.89881 -13.83449 -13.47046 -13.21038 -13.09486 -12.76720 -12.70205 -12.48428 -12.32823 -12.03061 -11.92079 -11.50705 -11.46705 -11.04295 -11.01302 -10.96981 -10.96721 -10.72282 -10.71042 -10.59354 -9.74603 -9.68378 -9.09281 -9.07938 -9.01714 -8.75852 -8.24400 -8.11570 -6.41381 -6.16002 -3.85298 2.25494 2.60661 2.77189 3.03558 3.24035 3.27704 3.31668 3.32536 3.38087 3.67719 3.97114 4.11571 4.25406 4.44408 4.63473 4.79186 4.94660 5.03809 5.08431 5.15676 5.18329 5.19436 5.29386 5.31455 5.40757 5.45639 5.47993 5.56304 5.62670 5.68784 5.70563 5.72392 5.84782 5.95837 6.01459 6.14566 6.19395 6.31550 6.36202 6.82213 6.97806 7.33593 7.47929 7.63575 7.73194 8.30441 8.39804 8.83839 9.28767 10.91197 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007700 B = 0.004420 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.546285 B = 6332.931722 C = 8927.206774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.203 4.203 3 C 0.231 3.769 4 N -0.734 5.734 5 C 0.519 3.481 6 O -0.508 6.508 7 C 0.009 3.991 8 N -0.427 5.427 9 C 0.009 3.991 10 C -0.136 4.136 11 C 0.012 3.988 12 H 0.075 0.925 13 C 0.139 3.861 14 N -0.627 5.627 15 C 0.081 3.919 16 C 0.529 3.471 17 O -0.484 6.484 18 C -0.149 4.149 19 S -0.056 6.056 20 C -0.536 4.536 21 H 0.070 0.930 22 C 0.074 3.926 23 N -0.866 5.866 24 Si 0.916 3.084 25 H -0.277 1.277 26 H -0.273 1.273 27 H -0.282 1.282 28 H 0.221 0.779 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.400 0.600 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 0.898 -22.818 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.203 4.203 3 C 0.108 3.892 4 N -0.389 5.389 5 C 0.305 3.695 6 O -0.381 6.381 7 C -0.123 4.123 8 N -0.149 5.149 9 C -0.120 4.120 10 C -0.174 4.174 11 C -0.099 4.099 12 H 0.092 0.908 13 C 0.015 3.985 14 N -0.364 5.364 15 C -0.062 4.062 16 C 0.316 3.684 17 O -0.355 6.355 18 C -0.300 4.300 19 S 0.171 5.829 20 C -0.684 4.684 21 H 0.088 0.912 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.742 3.258 25 H -0.203 1.203 26 H -0.198 1.198 27 H -0.208 1.208 28 H 0.238 0.762 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.234 0.766 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.265 -1.314 -21.221 21.299 hybrid contribution -2.966 2.188 -0.599 3.734 sum -4.231 0.874 -21.820 22.244 Atomic orbital electron populations 1.24985 0.95910 0.98075 1.00613 1.22975 0.94299 1.02194 1.00837 1.18061 0.82969 0.87240 1.00900 1.45920 1.07336 1.19899 1.65702 1.20406 0.81556 0.88761 0.78815 1.90740 1.54746 1.46115 1.46537 1.22514 0.92884 0.96772 1.00140 1.68698 1.05051 1.02838 1.38347 1.23839 0.96694 0.97823 0.93623 1.23353 0.98542 0.94977 1.00551 1.24001 0.97399 0.93759 0.94747 0.90752 1.21279 0.92163 0.94745 0.90313 1.47781 1.38337 1.35278 1.15009 1.21715 0.94580 0.89314 1.00625 1.20159 0.84616 0.82374 0.81298 1.90746 1.42331 1.26209 1.76211 1.23553 0.99765 1.04986 1.01671 1.85517 1.49287 1.43840 1.04245 1.22872 1.22149 1.21313 1.02054 0.91183 1.24970 0.96766 0.94995 0.96778 1.70031 1.39199 1.24576 1.16355 0.86220 0.80984 0.78965 0.79628 1.20291 1.19790 1.20788 0.76211 0.89295 0.88540 0.76596 0.88026 0.92124 0.92199 0.88668 0.91113 0.88623 0.90673 0.89149 0.92928 0.91888 0.91081 0.90109 0.89776 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 19.25 29.55 0.57 -1.15 16 2 C -0.20 -2.33 13.46 -37.12 -0.50 -2.83 16 3 C 0.23 2.88 6.15 -6.83 -0.04 2.84 16 4 N -0.73 -9.16 5.54 -63.16 -0.35 -9.51 16 5 C 0.52 7.92 7.64 -10.99 -0.08 7.84 16 6 O -0.51 -9.88 15.56 5.56 0.09 -9.79 16 7 C 0.01 0.11 5.31 -4.98 -0.03 0.09 16 8 N -0.43 -6.07 4.66 -231.16 -1.08 -7.15 16 9 C 0.01 0.11 6.78 -2.65 -0.02 0.09 16 10 C -0.14 -1.31 7.84 -25.79 -0.20 -1.51 16 11 C 0.01 0.12 3.58 -66.65 -0.24 -0.11 16 12 H 0.07 0.64 7.79 -51.93 -0.40 0.23 16 13 C 0.14 1.61 5.59 -4.04 -0.02 1.59 16 14 N -0.63 -8.60 2.83 -181.56 -0.51 -9.12 16 15 C 0.08 0.80 10.24 59.85 0.61 1.42 16 16 C 0.53 10.17 6.99 -10.99 -0.08 10.09 16 17 O -0.48 -11.38 14.88 5.55 0.08 -11.30 16 18 C -0.15 -3.10 4.71 36.01 0.17 -2.93 16 19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 20 C -0.54 -15.50 9.50 30.94 0.29 -15.20 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 23 N -0.87 -26.68 13.22 55.49 0.73 -25.95 16 24 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H 0.22 1.31 7.80 -54.08 -0.42 0.88 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.40 3.96 8.45 -40.82 -0.34 3.61 16 32 H 0.10 1.39 7.90 -51.93 -0.41 0.98 16 33 H 0.06 0.58 7.69 -51.93 -0.40 0.18 16 34 H 0.06 0.61 7.78 -51.93 -0.40 0.21 16 35 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.10 1.00 7.92 -51.93 -0.41 0.59 16 38 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 39 H 0.09 1.28 7.15 -51.93 -0.37 0.91 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 42 H 0.07 0.73 6.44 -51.93 -0.33 0.40 16 43 H 0.08 1.55 7.40 -51.92 -0.38 1.17 16 44 H 0.08 1.64 8.11 -51.91 -0.42 1.22 16 45 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -38.92 398.05 -8.74 -47.66 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.80 Total: 4.00 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 0.34 Total: 2.26 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -1.21 Total: -51.73 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.17 Total: -21.09 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.92 -8.74 -47.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.514 kcal (2) G-P(sol) polarization free energy of solvation -38.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds