Wall clock time and date at job start Tue Mar 31 2020 23:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47237 * 155.65819 * 3 2 1 5 5 C 1.34776 * 120.00011 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00144 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99718 * 180.02562 * 5 4 3 8 8 N 1.46901 * 109.46750 * 179.97438 * 7 5 4 9 9 C 1.48183 * 111.07843 * 70.71092 * 8 7 5 10 10 C 1.53929 * 86.22638 * 137.45871 * 9 8 7 11 11 C 1.47963 * 110.99766 * 170.00050 * 8 7 5 12 12 H 1.09000 * 113.76009 * 336.84480 * 11 8 7 13 13 C 1.52998 * 113.76031 * 108.09744 * 11 8 7 14 14 N 1.46505 * 109.47470 * 303.02187 * 13 11 8 15 15 C 1.46500 * 119.99756 * 270.00188 * 14 13 11 16 16 C 1.34771 * 120.00116 * 89.99486 * 14 13 11 17 17 O 1.21288 * 119.99896 * 0.02562 * 16 14 13 18 18 C 1.50703 * 120.00048 * 180.02562 * 16 14 13 19 19 S 1.81000 * 109.46826 * 180.02562 * 18 16 14 20 20 C 1.76205 * 99.99509 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00431 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99884 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99752 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 180.27840 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71945 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72142 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72250 * 24 22 20 28 28 H 4.40641 * 5.51424 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.47423 * 35.65587 * 3 2 1 30 30 H 1.08996 * 109.47232 * 275.65904 * 3 2 1 31 31 H 0.96992 * 119.99847 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.47052 * 59.99890 * 7 5 4 33 33 H 1.08996 * 109.47171 * 299.99930 * 7 5 4 34 34 H 1.08998 * 113.65487 * 23.13361 * 9 8 7 35 35 H 1.08998 * 113.82615 * 251.80905 * 9 8 7 36 36 H 1.09003 * 113.73414 * 222.01137 * 10 9 8 37 37 H 1.08997 * 113.73496 * 90.72772 * 10 9 8 38 38 H 1.09000 * 109.47145 * 183.02022 * 13 11 8 39 39 H 1.09007 * 109.47138 * 63.02086 * 13 11 8 40 40 H 1.08996 * 109.46996 * 269.99683 * 15 14 13 41 41 H 1.09003 * 109.47400 * 29.99677 * 15 14 13 42 42 H 1.09003 * 109.46993 * 149.99446 * 15 14 13 43 43 H 1.09000 * 109.46926 * 60.00592 * 18 16 14 44 44 H 1.09001 * 109.47144 * 300.00330 * 18 16 14 45 45 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.2594 -0.5693 5 6 4.4587 1.4841 -0.6713 6 8 5.2472 0.6446 -0.2914 7 6 4.9604 2.7791 -1.2564 8 7 6.4295 2.7796 -1.2565 9 6 6.9627 1.8262 -2.2577 10 6 7.9818 2.9245 -2.6109 11 6 6.9592 3.9208 -2.0353 12 1 6.2600 4.3094 -2.7757 13 6 7.5858 5.0180 -1.1726 14 7 6.5992 5.4998 -0.2026 15 6 5.7165 6.6166 -0.5489 16 6 6.5035 4.9156 1.0081 17 8 7.2345 3.9912 1.2949 18 6 5.4883 5.4109 2.0057 19 16 5.6062 4.4317 3.5233 20 6 4.3457 5.2025 4.4834 21 1 3.7793 6.0244 4.0711 22 6 4.0807 4.7534 5.7698 23 7 4.7708 3.7513 6.2722 24 14 2.7392 5.5654 6.7847 25 1 3.3206 6.6846 7.5687 26 1 1.6838 6.0897 5.8813 27 1 2.1468 4.5675 7.7113 28 1 -1.0502 -0.0003 0.0003 29 1 3.0097 -0.8342 -0.5990 30 1 3.0093 -0.1005 1.0226 31 1 2.5032 1.9306 -0.8735 32 1 4.5972 3.6136 -0.6567 33 1 4.5966 2.8809 -2.2788 34 1 6.2633 1.6008 -3.0628 35 1 7.4119 0.9343 -1.8209 36 1 8.1505 3.0385 -3.6817 37 1 8.9069 2.8652 -2.0377 38 1 7.9029 5.8440 -1.8091 39 1 8.4492 4.6151 -0.6430 40 1 6.1888 7.5558 -0.2607 41 1 5.5346 6.6163 -1.6236 42 1 4.7695 6.5087 -0.0200 43 1 4.4875 5.3112 1.5854 44 1 5.6840 6.4587 2.2336 45 1 4.5854 3.4372 7.1711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:44 Heat of formation + Delta-G solvation = 7.427408 kcal Electronic energy + Delta-G solvation = -27642.684769 eV Core-core repulsion = 23788.849931 eV Total energy + Delta-G solvation = -3853.834838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62853 -40.52287 -39.66516 -36.52983 -36.25910 -34.58235 -33.69129 -32.39595 -31.36626 -29.17942 -28.42904 -27.67483 -27.12307 -25.51726 -24.29479 -21.66321 -20.75209 -20.34670 -19.69250 -19.44556 -17.96652 -17.89771 -17.42262 -17.23061 -16.94912 -16.87187 -16.56092 -16.26774 -15.86022 -15.68169 -15.26411 -14.92671 -14.57577 -14.41702 -14.28485 -14.16391 -14.03765 -13.60974 -13.38577 -13.16668 -13.09056 -12.98366 -12.90433 -12.68345 -12.52523 -12.26533 -11.90125 -11.86152 -11.70285 -11.58974 -11.50423 -11.14248 -10.86341 -10.62379 -10.20520 -10.19245 -9.73373 -9.28600 -8.64777 -8.33752 -6.11551 1.27508 1.35774 1.40766 1.47371 1.57528 1.58546 1.78781 1.84896 2.21451 2.29498 2.43702 2.99877 3.04091 3.30471 3.32974 3.59308 3.74538 3.86748 3.89993 4.16549 4.22877 4.24111 4.30361 4.36893 4.39806 4.41837 4.47893 4.49776 4.53771 4.60285 4.78149 4.85588 4.94883 5.00239 5.00905 5.03948 5.26314 5.29907 5.40383 5.47431 5.80778 6.10612 6.19377 6.46537 6.50094 6.52786 7.06743 7.19737 7.43869 8.75462 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007700 B = 0.004420 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.546285 B = 6332.931722 C = 8927.206774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.251 4.251 3 C 0.233 3.767 4 N -0.721 5.721 5 C 0.509 3.491 6 O -0.563 6.563 7 C 0.016 3.984 8 N -0.477 5.477 9 C 0.008 3.992 10 C -0.120 4.120 11 C 0.020 3.980 12 H 0.113 0.887 13 C 0.134 3.866 14 N -0.611 5.611 15 C 0.072 3.928 16 C 0.529 3.471 17 O -0.540 6.540 18 C -0.121 4.121 19 S -0.156 6.156 20 C -0.543 4.543 21 H 0.081 0.919 22 C 0.012 3.988 23 N -0.913 5.913 24 Si 0.998 3.002 25 H -0.267 1.267 26 H -0.256 1.256 27 H -0.279 1.279 28 H 0.259 0.741 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.414 0.586 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.845 3.962 -25.806 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.252 4.252 3 C 0.110 3.890 4 N -0.375 5.375 5 C 0.297 3.703 6 O -0.440 6.440 7 C -0.115 4.115 8 N -0.201 5.201 9 C -0.121 4.121 10 C -0.158 4.158 11 C -0.089 4.089 12 H 0.130 0.870 13 C 0.012 3.988 14 N -0.345 5.345 15 C -0.070 4.070 16 C 0.315 3.685 17 O -0.416 6.416 18 C -0.272 4.272 19 S 0.071 5.929 20 C -0.691 4.691 21 H 0.099 0.901 22 C -0.192 4.192 23 N -0.550 5.550 24 Si 0.819 3.181 25 H -0.192 1.192 26 H -0.179 1.179 27 H -0.204 1.204 28 H 0.275 0.725 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.251 0.749 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.988 1.817 -24.281 24.673 hybrid contribution -2.153 1.259 0.218 2.503 sum -6.140 3.076 -24.063 25.024 Atomic orbital electron populations 1.25885 0.96591 0.95516 0.97886 1.22924 0.94358 1.04592 1.03295 1.17863 0.84372 0.87536 0.99239 1.45864 1.06963 1.20160 1.64550 1.21090 0.81831 0.89293 0.78131 1.90714 1.56197 1.48090 1.49023 1.22504 0.92663 0.94427 1.01927 1.68671 1.05878 1.05004 1.40551 1.23791 0.97843 0.96913 0.93512 1.23240 0.97017 0.93227 1.02364 1.24082 0.97829 0.92523 0.94500 0.86959 1.21535 0.90590 0.96711 0.90009 1.47699 1.38556 1.35106 1.13171 1.22054 0.93530 0.88012 1.03372 1.19895 0.83721 0.82095 0.82755 1.90737 1.44330 1.28853 1.77658 1.23362 1.01601 1.03940 0.98293 1.85774 1.50344 1.47221 1.09513 1.23187 1.22001 1.21428 1.02503 0.90057 1.26145 0.99442 0.95457 0.98150 1.70217 1.41370 1.26520 1.16893 0.84972 0.77562 0.77867 0.77690 1.19185 1.17939 1.20421 0.72463 0.88988 0.91670 0.74930 0.88802 0.87878 0.90049 0.92403 0.87430 0.90449 0.86061 0.92606 0.91590 0.87659 0.91494 0.88316 0.88247 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 19.25 74.32 1.43 -1.00 16 2 C -0.25 -5.74 13.46 31.12 0.42 -5.32 16 3 C 0.23 6.23 6.15 84.57 0.52 6.75 16 4 N -0.72 -18.49 5.54 -472.12 -2.61 -21.10 16 5 C 0.51 16.15 7.64 87.66 0.67 16.82 16 6 O -0.56 -23.66 15.56 -3.03 -0.05 -23.71 16 7 C 0.02 0.40 5.31 85.56 0.45 0.85 16 8 N -0.48 -13.42 4.66 -885.25 -4.13 -17.55 16 9 C 0.01 0.19 6.78 86.36 0.59 0.78 16 10 C -0.12 -2.09 7.84 31.23 0.25 -1.84 16 11 C 0.02 0.37 3.58 45.02 0.16 0.53 16 12 H 0.11 1.24 7.79 -2.39 -0.02 1.22 16 13 C 0.13 2.78 5.59 86.38 0.48 3.27 16 14 N -0.61 -15.36 2.83 -846.73 -2.40 -17.76 16 15 C 0.07 1.11 10.24 127.77 1.31 2.42 16 16 C 0.53 20.44 6.99 87.66 0.61 21.05 16 17 O -0.54 -26.73 14.88 -3.06 -0.05 -26.78 16 18 C -0.12 -5.02 4.71 71.24 0.34 -4.69 16 19 S -0.16 -9.09 20.57 -56.49 -1.16 -10.25 16 20 C -0.54 -31.90 9.50 67.96 0.65 -31.26 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.73 5.49 84.86 0.47 1.20 16 23 N -0.91 -58.18 13.22 21.65 0.29 -57.90 16 24 Si 1.00 44.49 29.55 68.60 2.03 46.52 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 H 0.26 2.03 7.80 -4.41 -0.03 2.00 16 29 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.41 7.93 8.45 -92.71 -0.78 7.15 16 32 H 0.09 2.43 7.90 -2.39 -0.02 2.41 16 33 H 0.10 1.59 7.69 -2.39 -0.02 1.57 16 34 H 0.08 1.52 7.78 -2.39 -0.02 1.50 16 35 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.63 7.92 -2.39 -0.02 1.61 16 38 H 0.12 1.43 8.07 -2.39 -0.02 1.41 16 39 H 0.06 1.58 7.15 -2.38 -0.02 1.56 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.81 8.07 -2.39 -0.02 0.79 16 42 H 0.07 1.12 6.44 -2.39 -0.02 1.10 16 43 H 0.10 3.71 7.40 -2.39 -0.02 3.70 16 44 H 0.10 3.79 8.11 -2.39 -0.02 3.77 16 45 H 0.27 15.96 8.31 -92.70 -0.77 15.19 16 Total: -1.00 -93.94 398.05 0.47 -93.47 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.21 Total: 25.50 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 8.34 Total: 9.55 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -8.85 Total: -114.30 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -0.09 Total: -50.49 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.16 Total: -10.25 kcal Total: -93.94 0.47 -93.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.896 kcal (2) G-P(sol) polarization free energy of solvation -93.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds