Wall clock time and date at job start Tue Mar 31 2020 22:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36454 * 126.29561 * 2 1 4 4 O 1.35280 * 125.03813 * 0.02562 * 3 2 1 5 5 C 1.42902 * 117.00099 * 184.56418 * 4 3 2 6 6 H 1.09006 * 109.46778 * 329.18563 * 5 4 3 7 7 C 1.50695 * 109.47075 * 209.18958 * 5 4 3 8 8 H 1.08005 * 120.00130 * 357.20512 * 7 5 4 9 9 C 1.37879 * 120.00373 * 177.21036 * 7 5 4 10 10 N 1.31512 * 119.99640 * 351.43284 * 9 7 5 11 11 Si 1.86798 * 120.00082 * 171.16172 * 9 7 5 12 12 H 1.48498 * 109.47250 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46867 * 119.99819 * 11 9 7 14 14 H 1.48502 * 109.46729 * 239.99633 * 11 9 7 15 15 C 1.53000 * 109.47154 * 89.18893 * 5 4 3 16 16 N 1.46896 * 109.47388 * 51.63631 * 15 5 4 17 17 C 1.46905 * 109.46816 * 54.47082 * 16 15 5 18 18 C 1.46896 * 109.47206 * 174.46792 * 16 15 5 19 19 C 1.46898 * 109.47362 * 294.47381 * 16 15 5 20 20 N 1.30765 * 109.92600 * 180.26602 * 3 2 1 21 21 C 1.35785 * 109.48163 * 359.56885 * 20 3 2 22 22 C 1.39764 * 133.75061 * 180.09300 * 21 20 3 23 23 C 1.38348 * 118.15963 * 180.35893 * 22 21 20 24 24 Cl 1.73602 * 120.24617 * 179.97438 * 23 22 21 25 25 C 1.38648 * 119.51336 * 0.02562 * 23 22 21 26 26 N 1.31755 * 121.32198 * 359.97438 * 25 23 22 27 27 C 1.32271 * 121.60393 * 0.02562 * 26 25 23 28 28 H 1.09003 * 109.47270 * 89.97490 * 1 2 3 29 29 H 1.08992 * 109.47275 * 209.97471 * 1 2 3 30 30 H 1.09004 * 109.47104 * 329.97666 * 1 2 3 31 31 H 0.97005 * 119.99941 * 1.64492 * 10 9 7 32 32 H 1.08998 * 109.47228 * 171.63812 * 15 5 4 33 33 H 1.09002 * 109.46778 * 291.63655 * 15 5 4 34 34 H 1.08998 * 109.47476 * 42.95478 * 17 16 15 35 35 H 1.08998 * 109.46971 * 162.96159 * 17 16 15 36 36 H 1.09004 * 109.46742 * 282.95641 * 17 16 15 37 37 H 1.08996 * 109.47469 * 60.00415 * 18 16 15 38 38 H 1.08998 * 109.47237 * 180.02562 * 18 16 15 39 39 H 1.08999 * 109.47351 * 299.99756 * 18 16 15 40 40 H 1.08997 * 109.47649 * 78.35718 * 19 16 15 41 41 H 1.09001 * 109.47038 * 198.36367 * 19 16 15 42 42 H 1.09001 * 109.46830 * 318.35692 * 19 16 15 43 43 H 1.08002 * 120.92496 * 0.34248 * 22 21 20 44 44 H 1.07999 * 119.34317 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2727 1.0998 0.0000 4 8 1.8398 2.3814 0.0005 5 6 2.8345 3.4023 -0.1009 6 1 3.7574 3.0579 0.3658 7 6 2.3512 4.6460 0.5995 8 1 1.3633 4.6709 1.0355 9 6 3.1699 5.7522 0.6838 10 7 4.4268 5.6702 0.3056 11 14 2.4918 7.3692 1.3278 12 1 1.0586 7.2006 1.6779 13 1 3.2521 7.7785 2.5360 14 1 2.6257 8.4140 0.2811 15 6 3.0949 3.7160 -1.5756 16 7 1.8189 3.9863 -2.2514 17 6 1.1004 5.0483 -1.5344 18 6 2.0776 4.4162 -3.6321 19 6 1.0028 2.7650 -2.2635 20 7 3.5274 0.7312 -0.0057 21 6 3.6011 -0.6246 -0.0001 22 6 4.6617 -1.5348 -0.0006 23 6 4.3628 -2.8856 -0.0010 24 17 5.6381 -4.0635 -0.0024 25 6 3.0371 -3.2918 -0.0015 26 7 2.0525 -2.4163 -0.0010 27 6 2.2831 -1.1139 -0.0006 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 4.7716 4.8382 -0.0548 32 1 3.7394 4.5917 -1.6525 33 1 3.5827 2.8633 -2.0478 34 1 1.7993 5.8384 -1.2598 35 1 0.3223 5.4588 -2.1779 36 1 0.6465 4.6354 -0.6335 37 1 2.6107 3.6283 -4.1642 38 1 1.1308 4.6172 -4.1334 39 1 2.6830 5.3225 -3.6231 40 1 0.5413 2.6266 -1.2858 41 1 0.2259 2.8547 -3.0228 42 1 1.6358 1.9073 -2.4911 43 1 5.6863 -1.1933 -0.0009 44 1 2.8069 -4.3470 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231086209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:28 Heat of formation + Delta-G solvation = 173.925878 kcal Electronic energy + Delta-G solvation = -28866.602815 eV Core-core repulsion = 24966.174015 eV Total energy + Delta-G solvation = -3900.428801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.133 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.88699 -43.29414 -40.30571 -38.87318 -37.50251 -35.82674 -35.63510 -32.83073 -31.59771 -30.50559 -30.34502 -30.26530 -28.43269 -27.77295 -25.23869 -24.82756 -24.26739 -23.39056 -21.88861 -19.97813 -19.63639 -19.05776 -18.62656 -18.59834 -18.29199 -17.81936 -17.48156 -16.97137 -16.07697 -15.97082 -15.42404 -15.24830 -15.12578 -15.03831 -14.87471 -14.65961 -14.58362 -14.24205 -14.16756 -14.10670 -13.91880 -13.85208 -13.61792 -13.50196 -13.21043 -13.03905 -12.61625 -12.38437 -12.24762 -12.05161 -11.84736 -11.60256 -11.56572 -10.74564 -10.46152 -10.21798 -9.81505 -9.33307 -8.38773 -6.25678 -0.40323 -0.11813 0.26821 0.43397 0.94184 1.49652 1.98026 2.02759 2.15116 2.18085 2.29210 2.31432 2.39608 2.52496 2.82774 2.85755 3.07356 3.10904 3.20948 3.23283 3.38923 3.46063 3.53424 3.62711 3.66541 3.67785 3.68451 3.68973 3.83474 3.89121 3.98858 4.08712 4.14932 4.17732 4.27571 4.48777 4.67435 4.69137 4.82515 4.90248 5.04316 5.26966 5.54682 6.04520 6.35119 6.54227 6.56443 6.69387 7.37386 8.93785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.476 5.476 3 C 0.481 3.519 4 O -0.288 6.288 5 C 0.200 3.800 6 H 0.091 0.909 7 C -0.636 4.636 8 H 0.085 0.915 9 C 0.039 3.961 10 N -0.864 5.864 11 Si 1.064 2.936 12 H -0.277 1.277 13 H -0.271 1.271 14 H -0.275 1.275 15 C -0.032 4.032 16 N -0.251 5.251 17 C -0.029 4.029 18 C -0.044 4.044 19 C -0.046 4.046 20 N -0.520 5.520 21 C 0.043 3.957 22 C -0.021 4.021 23 C -0.092 4.092 24 Cl -0.042 7.042 25 C 0.143 3.857 26 N -0.458 5.458 27 C 0.243 3.757 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.276 0.724 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.154 0.846 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 -2.783 -11.430 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.178 5.178 3 C 0.178 3.822 4 O -0.192 6.192 5 C 0.145 3.855 6 H 0.108 0.892 7 C -0.672 4.672 8 H 0.103 0.897 9 C -0.171 4.171 10 N -0.495 5.495 11 Si 0.887 3.113 12 H -0.202 1.202 13 H -0.196 1.196 14 H -0.200 1.200 15 C -0.154 4.154 16 N 0.091 4.909 17 C -0.169 4.169 18 C -0.185 4.185 19 C -0.188 4.188 20 N -0.257 5.257 21 C -0.077 4.077 22 C -0.049 4.049 23 C -0.124 4.124 24 Cl -0.013 7.013 25 C -0.024 4.024 26 N -0.171 5.171 27 C 0.008 3.992 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.159 0.841 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.158 0.842 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.172 0.828 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.755 -0.818 -11.077 14.143 hybrid contribution 0.177 -2.002 -0.216 2.021 sum -8.578 -2.820 -11.292 14.458 Atomic orbital electron populations 1.22132 0.74578 1.05808 1.03772 1.44278 1.07487 1.02439 1.63604 1.20707 0.83887 0.83351 0.94250 1.86086 1.37747 1.08144 1.87184 1.20843 0.91076 0.84333 0.89264 0.89156 1.21921 1.06210 0.95805 1.43293 0.89713 1.26136 0.93247 1.03218 0.94519 1.70950 1.12818 1.30721 1.35051 0.83519 0.75937 0.73250 0.78559 1.20188 1.19603 1.20011 1.24906 0.83824 1.07170 0.99486 1.45742 1.15809 1.15241 1.14103 1.24759 0.99813 0.92145 1.00189 1.24089 1.07305 1.05951 0.81202 1.24429 0.98319 0.86741 1.09284 1.70806 1.14682 1.10831 1.29407 1.19198 0.92461 0.90635 1.05409 1.20547 0.99405 0.89117 0.95803 1.21633 0.91299 0.90914 1.08537 1.98412 1.49643 1.56332 1.96904 1.22535 0.85289 0.98993 0.95545 1.66451 1.36269 0.99076 1.15265 1.18594 0.88348 0.87536 1.04707 0.90536 0.88556 0.88720 0.91187 0.84052 0.87917 0.85322 0.89530 0.84192 0.87244 0.86774 0.86346 0.84541 0.87453 0.88393 0.82784 0.80574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.30 11.13 59.85 0.67 0.37 16 2 N -0.48 0.04 3.22 -125.18 -0.40 -0.36 16 3 C 0.48 0.38 7.49 -88.85 -0.67 -0.29 16 4 O -0.29 0.21 5.72 -17.53 -0.10 0.10 16 5 C 0.20 0.18 1.83 -27.89 -0.05 0.13 16 6 H 0.09 0.44 6.70 -51.93 -0.35 0.10 16 7 C -0.64 -2.19 5.28 -34.44 -0.18 -2.37 16 8 H 0.08 0.32 6.97 -52.48 -0.37 -0.04 16 9 C 0.04 0.23 4.04 -17.82 -0.07 0.16 16 10 N -0.86 -7.16 12.90 55.43 0.72 -6.45 16 11 Si 1.06 5.41 29.38 -169.99 -4.99 0.42 16 12 H -0.28 -1.12 7.11 56.52 0.40 -0.72 16 13 H -0.27 -2.06 7.11 56.52 0.40 -1.66 16 14 H -0.27 -1.33 7.11 56.52 0.40 -0.93 16 15 C -0.03 0.12 3.84 -3.83 -0.01 0.11 16 16 N -0.25 2.07 0.05 -395.63 -0.02 2.05 16 17 C -0.03 0.20 6.78 60.07 0.41 0.60 16 18 C -0.04 0.49 7.88 60.06 0.47 0.96 16 19 C -0.05 0.42 7.00 60.06 0.42 0.84 16 20 N -0.52 -1.54 10.10 -12.20 -0.12 -1.66 16 21 C 0.04 0.12 7.24 -84.66 -0.61 -0.49 16 22 C -0.02 -0.03 10.02 -38.97 -0.39 -0.42 16 23 C -0.09 -0.06 6.34 -39.39 -0.25 -0.31 16 24 Cl -0.04 -0.01 28.98 -51.86 -1.50 -1.51 16 25 C 0.14 0.06 10.96 -17.43 -0.19 -0.13 16 26 N -0.46 -0.87 10.38 -12.18 -0.13 -1.00 16 27 C 0.24 0.51 8.01 -155.35 -1.24 -0.73 16 28 H 0.08 -0.46 8.14 -51.93 -0.42 -0.89 16 29 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 30 H 0.09 -0.47 8.12 -51.93 -0.42 -0.89 16 31 H 0.28 2.03 6.02 -40.82 -0.25 1.78 16 32 H 0.14 -0.29 5.99 -51.93 -0.31 -0.60 16 33 H 0.10 -0.47 7.87 -51.93 -0.41 -0.88 16 34 H 0.13 -0.51 5.37 -51.93 -0.28 -0.79 16 35 H 0.09 -0.87 7.85 -51.93 -0.41 -1.27 16 36 H 0.14 -0.71 4.91 -51.93 -0.25 -0.96 16 37 H 0.11 -1.29 8.14 -51.93 -0.42 -1.72 16 38 H 0.11 -1.51 7.89 -51.93 -0.41 -1.92 16 39 H 0.12 -1.26 8.11 -51.93 -0.42 -1.68 16 40 H 0.14 -1.04 5.06 -51.93 -0.26 -1.31 16 41 H 0.11 -1.30 7.82 -51.93 -0.41 -1.70 16 42 H 0.10 -0.80 7.18 -51.93 -0.37 -1.17 16 43 H 0.15 0.06 8.06 -52.49 -0.42 -0.36 16 44 H 0.18 -0.39 8.06 -52.49 -0.42 -0.81 16 LS Contribution 356.28 15.07 5.37 5.37 Total: 0.00 -15.07 356.28 -8.72 -23.79 By element: Atomic # 1 Polarization: -13.33 SS G_CDS: -5.82 Total: -19.15 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.71 Total: -1.59 kcal Atomic # 7 Polarization: -7.46 SS G_CDS: 0.04 Total: -7.42 kcal Atomic # 8 Polarization: 0.21 SS G_CDS: -0.10 Total: 0.10 kcal Atomic # 14 Polarization: 5.41 SS G_CDS: -4.99 Total: 0.42 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.50 Total: -1.51 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -15.07 -8.72 -23.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231086209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.713 kcal (2) G-P(sol) polarization free energy of solvation -15.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds