Wall clock time and date at job start Tue Mar 31 2020 22:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36454 * 126.29561 * 2 1 4 4 O 1.35280 * 125.03813 * 0.02562 * 3 2 1 5 5 C 1.42902 * 117.00099 * 184.56418 * 4 3 2 6 6 H 1.09006 * 109.46778 * 329.18563 * 5 4 3 7 7 C 1.50695 * 109.47075 * 209.18958 * 5 4 3 8 8 H 1.08005 * 120.00130 * 357.20512 * 7 5 4 9 9 C 1.37879 * 120.00373 * 177.21036 * 7 5 4 10 10 N 1.31512 * 119.99640 * 351.43284 * 9 7 5 11 11 Si 1.86798 * 120.00082 * 171.16172 * 9 7 5 12 12 H 1.48498 * 109.47250 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46867 * 119.99819 * 11 9 7 14 14 H 1.48502 * 109.46729 * 239.99633 * 11 9 7 15 15 C 1.53000 * 109.47154 * 89.18893 * 5 4 3 16 16 N 1.46896 * 109.47388 * 51.63631 * 15 5 4 17 17 C 1.46905 * 109.46816 * 54.47082 * 16 15 5 18 18 C 1.46896 * 109.47206 * 174.46792 * 16 15 5 19 19 C 1.46898 * 109.47362 * 294.47381 * 16 15 5 20 20 N 1.30765 * 109.92600 * 180.26602 * 3 2 1 21 21 C 1.35785 * 109.48163 * 359.56885 * 20 3 2 22 22 C 1.39764 * 133.75061 * 180.09300 * 21 20 3 23 23 C 1.38348 * 118.15963 * 180.35893 * 22 21 20 24 24 Cl 1.73602 * 120.24617 * 179.97438 * 23 22 21 25 25 C 1.38648 * 119.51336 * 0.02562 * 23 22 21 26 26 N 1.31755 * 121.32198 * 359.97438 * 25 23 22 27 27 C 1.32271 * 121.60393 * 0.02562 * 26 25 23 28 28 H 1.09003 * 109.47270 * 89.97490 * 1 2 3 29 29 H 1.08992 * 109.47275 * 209.97471 * 1 2 3 30 30 H 1.09004 * 109.47104 * 329.97666 * 1 2 3 31 31 H 0.97005 * 119.99941 * 1.64492 * 10 9 7 32 32 H 1.08998 * 109.47228 * 171.63812 * 15 5 4 33 33 H 1.09002 * 109.46778 * 291.63655 * 15 5 4 34 34 H 1.08998 * 109.47476 * 42.95478 * 17 16 15 35 35 H 1.08998 * 109.46971 * 162.96159 * 17 16 15 36 36 H 1.09004 * 109.46742 * 282.95641 * 17 16 15 37 37 H 1.08996 * 109.47469 * 60.00415 * 18 16 15 38 38 H 1.08998 * 109.47237 * 180.02562 * 18 16 15 39 39 H 1.08999 * 109.47351 * 299.99756 * 18 16 15 40 40 H 1.08997 * 109.47649 * 78.35718 * 19 16 15 41 41 H 1.09001 * 109.47038 * 198.36367 * 19 16 15 42 42 H 1.09001 * 109.46830 * 318.35692 * 19 16 15 43 43 H 1.08002 * 120.92496 * 0.34248 * 22 21 20 44 44 H 1.07999 * 119.34317 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2727 1.0998 0.0000 4 8 1.8398 2.3814 0.0005 5 6 2.8345 3.4023 -0.1009 6 1 3.7574 3.0579 0.3658 7 6 2.3512 4.6460 0.5995 8 1 1.3633 4.6709 1.0355 9 6 3.1699 5.7522 0.6838 10 7 4.4268 5.6702 0.3056 11 14 2.4918 7.3692 1.3278 12 1 1.0586 7.2006 1.6779 13 1 3.2521 7.7785 2.5360 14 1 2.6257 8.4140 0.2811 15 6 3.0949 3.7160 -1.5756 16 7 1.8189 3.9863 -2.2514 17 6 1.1004 5.0483 -1.5344 18 6 2.0776 4.4162 -3.6321 19 6 1.0028 2.7650 -2.2635 20 7 3.5274 0.7312 -0.0057 21 6 3.6011 -0.6246 -0.0001 22 6 4.6617 -1.5348 -0.0006 23 6 4.3628 -2.8856 -0.0010 24 17 5.6381 -4.0635 -0.0024 25 6 3.0371 -3.2918 -0.0015 26 7 2.0525 -2.4163 -0.0010 27 6 2.2831 -1.1139 -0.0006 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 4.7716 4.8382 -0.0548 32 1 3.7394 4.5917 -1.6525 33 1 3.5827 2.8633 -2.0478 34 1 1.7993 5.8384 -1.2598 35 1 0.3223 5.4588 -2.1779 36 1 0.6465 4.6354 -0.6335 37 1 2.6107 3.6283 -4.1642 38 1 1.1308 4.6172 -4.1334 39 1 2.6830 5.3225 -3.6231 40 1 0.5413 2.6266 -1.2858 41 1 0.2259 2.8547 -3.0228 42 1 1.6358 1.9073 -2.4911 43 1 5.6863 -1.1933 -0.0009 44 1 2.8069 -4.3470 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231086209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:26 Heat of formation + Delta-G solvation = 171.283374 kcal Electronic energy + Delta-G solvation = -28866.717403 eV Core-core repulsion = 24966.174015 eV Total energy + Delta-G solvation = -3900.543388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.133 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -43.78744 -42.96471 -40.28314 -38.85943 -37.54381 -35.99300 -35.72249 -32.86485 -31.59174 -30.40709 -29.86022 -29.62757 -28.25740 -27.63875 -25.37505 -24.68030 -24.16742 -23.27434 -21.89568 -20.06375 -19.64806 -19.12945 -18.38221 -18.18757 -17.86035 -17.69864 -17.35540 -16.88356 -16.09289 -15.89663 -15.67976 -15.23088 -14.91770 -14.85158 -14.69831 -14.64131 -14.21223 -14.11065 -13.79506 -13.64903 -13.51526 -13.47277 -13.28287 -13.07971 -13.02011 -12.88800 -12.66919 -12.51702 -12.44162 -12.11334 -11.96565 -11.90462 -11.56029 -11.03797 -10.68558 -10.52309 -9.85744 -9.40081 -8.84579 -6.65102 -0.46786 -0.18318 0.38140 0.87899 0.91573 1.43769 1.53292 1.66121 1.73195 2.10096 2.42741 2.44441 2.76897 2.81832 2.88088 2.97861 3.03172 3.14416 3.45519 3.60615 3.69157 3.77650 3.81779 4.02612 4.09060 4.17553 4.24863 4.27061 4.28797 4.37651 4.47079 4.54881 4.57425 4.63602 4.65245 4.67562 4.68999 4.76995 4.88640 4.97867 5.18088 5.25456 5.32397 5.86310 6.11033 6.27529 6.44109 6.50759 6.99518 8.50991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.468 5.468 3 C 0.482 3.518 4 O -0.271 6.271 5 C 0.203 3.797 6 H 0.046 0.954 7 C -0.610 4.610 8 H 0.084 0.916 9 C 0.017 3.983 10 N -0.911 5.911 11 Si 1.087 2.913 12 H -0.256 1.256 13 H -0.311 1.311 14 H -0.270 1.270 15 C -0.010 4.010 16 N -0.242 5.242 17 C -0.032 4.032 18 C -0.047 4.047 19 C -0.049 4.049 20 N -0.550 5.550 21 C 0.020 3.980 22 C -0.029 4.029 23 C -0.090 4.090 24 Cl -0.038 7.038 25 C 0.146 3.854 26 N -0.468 5.468 27 C 0.232 3.768 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.273 0.727 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.148 0.852 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.157 0.843 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 -3.598 -13.469 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.170 5.170 3 C 0.180 3.820 4 O -0.175 6.175 5 C 0.147 3.853 6 H 0.063 0.937 7 C -0.647 4.647 8 H 0.102 0.898 9 C -0.188 4.188 10 N -0.546 5.546 11 Si 0.911 3.089 12 H -0.180 1.180 13 H -0.239 1.239 14 H -0.195 1.195 15 C -0.134 4.134 16 N 0.100 4.900 17 C -0.172 4.172 18 C -0.187 4.187 19 C -0.190 4.190 20 N -0.288 5.288 21 C -0.100 4.100 22 C -0.057 4.057 23 C -0.122 4.122 24 Cl -0.009 7.009 25 C -0.021 4.021 26 N -0.181 5.181 27 C -0.003 4.003 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.167 0.833 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.169 0.831 42 H 0.109 0.891 43 H 0.175 0.825 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.348 -1.628 -13.133 17.433 hybrid contribution 0.904 -1.828 0.453 2.089 sum -10.444 -3.455 -12.680 16.787 Atomic orbital electron populations 1.22451 0.72296 1.06219 1.05881 1.44419 1.08589 1.01353 1.62651 1.20642 0.83741 0.83743 0.93911 1.86130 1.36499 1.07524 1.87333 1.20498 0.89186 0.83617 0.92006 0.93670 1.21989 1.05328 0.95897 1.41504 0.89774 1.26388 0.93108 1.04531 0.94781 1.70973 1.14212 1.30918 1.38501 0.83257 0.76229 0.72838 0.76571 1.17959 1.23922 1.19545 1.24257 0.85959 1.06672 0.96490 1.45573 1.13617 1.15622 1.15146 1.24583 1.00004 0.91529 1.01091 1.24314 1.09354 1.06010 0.79027 1.24514 0.98809 0.85810 1.09824 1.70757 1.16209 1.11272 1.30555 1.19441 0.93352 0.90769 1.06459 1.20692 0.99521 0.89567 0.95958 1.21643 0.91628 0.90592 1.08320 1.98412 1.49565 1.56037 1.96873 1.22987 0.84932 0.99938 0.94279 1.66534 1.36669 0.98998 1.15885 1.18787 0.88550 0.88035 1.04902 0.87606 0.88969 0.87456 0.91565 0.85698 0.86985 0.88283 0.84981 0.86074 0.86201 0.83348 0.87004 0.86055 0.83133 0.89124 0.82524 0.78090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.62 11.13 127.77 1.42 0.80 16 2 N -0.47 0.06 3.22 -660.80 -2.13 -2.07 16 3 C 0.48 1.19 7.49 179.73 1.35 2.54 16 4 O -0.27 0.20 5.72 -85.65 -0.49 -0.29 16 5 C 0.20 0.73 1.83 29.85 0.05 0.78 16 6 H 0.05 0.60 6.70 -2.38 -0.02 0.59 16 7 C -0.61 -5.21 5.28 25.60 0.14 -5.07 16 8 H 0.08 0.71 6.97 -2.91 -0.02 0.69 16 9 C 0.02 0.24 4.04 84.66 0.34 0.58 16 10 N -0.91 -18.02 12.90 21.45 0.28 -17.74 16 11 Si 1.09 12.71 29.38 68.60 2.02 14.73 16 12 H -0.26 -1.99 7.11 99.48 0.71 -1.28 16 13 H -0.31 -5.72 7.11 99.48 0.71 -5.02 16 14 H -0.27 -2.86 7.11 99.48 0.71 -2.15 16 15 C -0.01 0.07 3.84 86.30 0.33 0.40 16 16 N -0.24 4.26 0.05 ******* -0.07 4.19 16 17 C -0.03 0.46 6.78 127.69 0.87 1.33 16 18 C -0.05 1.14 7.88 127.69 1.01 2.15 16 19 C -0.05 0.99 7.00 127.69 0.89 1.88 16 20 N -0.55 -4.30 10.10 -306.33 -3.09 -7.39 16 21 C 0.02 0.14 7.24 39.48 0.29 0.43 16 22 C -0.03 -0.13 10.02 22.67 0.23 0.10 16 23 C -0.09 -0.16 6.34 22.39 0.14 -0.02 16 24 Cl -0.04 -0.03 28.98 -2.72 -0.08 -0.10 16 25 C 0.15 0.09 10.96 84.80 0.93 1.01 16 26 N -0.47 -1.74 10.38 -192.46 -2.00 -3.74 16 27 C 0.23 1.09 8.01 133.73 1.07 2.16 16 28 H 0.11 -1.53 8.14 -2.39 -0.02 -1.55 16 29 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.11 -1.20 8.12 -2.38 -0.02 -1.22 16 31 H 0.27 5.02 6.02 -92.70 -0.56 4.47 16 32 H 0.13 -0.25 5.99 -2.39 -0.01 -0.27 16 33 H 0.11 -0.91 7.87 -2.39 -0.02 -0.93 16 34 H 0.10 -0.74 5.37 -2.39 -0.01 -0.75 16 35 H 0.13 -3.07 7.85 -2.39 -0.02 -3.09 16 36 H 0.12 -1.29 4.91 -2.38 -0.01 -1.31 16 37 H 0.12 -3.09 8.14 -2.39 -0.02 -3.11 16 38 H 0.15 -4.55 7.89 -2.39 -0.02 -4.57 16 39 H 0.11 -2.49 8.11 -2.39 -0.02 -2.51 16 40 H 0.12 -2.04 5.06 -2.39 -0.01 -2.05 16 41 H 0.15 -4.30 7.82 -2.39 -0.02 -4.32 16 42 H 0.09 -1.61 7.18 -2.39 -0.02 -1.63 16 43 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 44 H 0.20 -1.10 8.06 -2.91 -0.02 -1.12 16 Total: 0.00 -39.51 356.28 4.73 -34.78 By element: Atomic # 1 Polarization: -32.66 SS G_CDS: 1.24 Total: -31.42 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 9.05 Total: 9.07 kcal Atomic # 7 Polarization: -19.75 SS G_CDS: -7.01 Total: -26.76 kcal Atomic # 8 Polarization: 0.20 SS G_CDS: -0.49 Total: -0.29 kcal Atomic # 14 Polarization: 12.71 SS G_CDS: 2.02 Total: 14.73 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.10 kcal Total: -39.51 4.73 -34.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231086209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.065 kcal (2) G-P(sol) polarization free energy of solvation -39.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds