Wall clock time and date at job start Tue Mar 31 2020 23:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99927 * 2 1 4 4 C 1.50700 * 109.46806 * 179.97438 * 3 2 1 5 5 N 1.29438 * 124.80008 * 90.28983 * 4 3 2 6 6 C 1.30944 * 117.35817 * 180.17798 * 5 4 3 7 7 C 1.35666 * 114.19500 * 359.55114 * 6 5 4 8 8 C 1.46676 * 126.12986 * 180.23564 * 7 6 5 9 9 O 1.21687 * 120.00188 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99823 * 180.02562 * 8 7 6 11 11 C 1.47026 * 125.65005 * 359.69105 * 10 8 7 12 12 C 1.54327 * 107.26534 * 178.84843 * 11 10 8 13 13 C 1.55153 * 103.02178 * 338.14000 * 12 11 10 14 14 H 1.08999 * 111.00468 * 277.22883 * 13 12 11 15 15 C 1.52998 * 111.03543 * 153.39743 * 13 12 11 16 16 N 1.46502 * 109.47301 * 181.33274 * 15 13 12 17 17 C 1.46497 * 120.00226 * 89.99735 * 16 15 13 18 18 C 1.36940 * 120.00021 * 269.99829 * 16 15 13 19 19 H 1.07992 * 120.00061 * 142.17902 * 18 16 15 20 20 C 1.38809 * 119.99847 * 322.18545 * 18 16 15 21 21 N 1.31618 * 120.00306 * 157.21617 * 20 18 16 22 22 Si 1.86801 * 120.00004 * 337.21461 * 20 18 16 23 23 H 1.48498 * 109.46944 * 95.82742 * 22 20 18 24 24 H 1.48507 * 109.47085 * 215.82370 * 22 20 18 25 25 H 1.48492 * 109.47112 * 335.82746 * 22 20 18 26 26 C 1.47421 * 125.64709 * 179.97438 * 10 8 7 27 27 S 1.70952 * 124.80613 * 270.00197 * 4 3 2 28 28 H 1.09005 * 109.47195 * 59.99535 * 1 2 3 29 29 H 1.08994 * 109.47043 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47162 * 299.99990 * 1 2 3 31 31 H 1.08999 * 109.46621 * 60.00198 * 3 2 1 32 32 H 1.08999 * 109.47023 * 300.00200 * 3 2 1 33 33 H 1.08000 * 122.90062 * 179.82700 * 6 5 4 34 34 H 1.08997 * 109.88100 * 298.39856 * 11 10 8 35 35 H 1.09005 * 109.87820 * 59.55509 * 11 10 8 36 36 H 1.09008 * 110.84933 * 219.67169 * 12 11 10 37 37 H 1.08996 * 110.66816 * 96.52523 * 12 11 10 38 38 H 1.09005 * 109.47287 * 301.33108 * 15 13 12 39 39 H 1.09004 * 109.47347 * 61.33016 * 15 13 12 40 40 H 1.08997 * 109.47392 * 93.36376 * 17 16 15 41 41 H 1.09000 * 109.46919 * 213.36483 * 17 16 15 42 42 H 1.09007 * 109.47338 * 333.36264 * 17 16 15 43 43 H 0.97000 * 120.00299 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.37014 * 322.92637 * 26 10 8 45 45 H 1.08994 * 110.37041 * 85.14519 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2498 1.1333 -1.0619 6 6 5.5437 1.0263 -0.8918 7 6 5.9330 0.9954 0.4074 8 6 7.3122 0.8866 0.8946 9 8 8.2333 0.8135 0.1028 10 7 7.5593 0.8664 2.2195 11 6 6.5462 0.9521 3.2815 12 6 7.2887 0.8606 4.6313 13 6 8.6238 0.1684 4.2497 14 1 8.5028 -0.9138 4.2009 15 6 9.7385 0.5490 5.2260 16 7 10.9881 -0.0966 4.8164 17 6 11.8978 0.5872 3.8938 18 6 11.3060 -1.3393 5.2958 19 1 11.7897 -2.0589 4.6520 20 6 11.0062 -1.6741 6.6091 21 7 10.8821 -2.9382 6.9541 22 14 10.7789 -0.3306 7.8869 23 1 9.3334 -0.0208 8.0276 24 1 11.3153 -0.7930 9.1922 25 1 11.5071 0.8899 7.4567 26 6 8.8907 0.7608 2.8436 27 16 4.4847 1.1096 1.4047 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.2411 0.9720 -1.7147 34 1 6.0154 1.9015 3.2117 35 1 5.8429 0.1243 3.1904 36 1 6.7285 0.2528 5.3419 37 1 7.4724 1.8552 5.0375 38 1 9.8706 1.6310 5.2228 39 1 9.4709 0.2187 6.2298 40 1 12.6445 1.1405 4.4632 41 1 12.3947 -0.1485 3.2615 42 1 11.3308 1.2785 3.2702 43 1 10.6730 -3.1721 7.8720 44 1 9.5289 0.0926 2.2654 45 1 9.3502 1.7457 2.9264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267708545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:49 Heat of formation + Delta-G solvation = -19.416619 kcal Electronic energy + Delta-G solvation = -27063.866337 eV Core-core repulsion = 23208.867454 eV Total energy + Delta-G solvation = -3854.998882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49912 -40.72669 -39.07453 -38.68237 -37.25239 -34.02717 -33.23679 -32.43684 -30.37672 -29.73498 -28.41846 -27.38886 -26.90809 -25.22527 -24.37006 -22.91386 -22.49387 -21.49100 -20.01261 -19.64721 -18.74849 -17.99696 -17.67389 -17.53952 -17.22138 -16.92690 -16.56649 -16.17052 -16.02844 -15.58352 -15.37028 -15.18620 -14.98519 -14.77243 -14.56833 -14.08338 -13.95594 -13.87309 -13.69889 -13.49030 -13.27692 -13.00706 -12.74815 -12.61527 -12.49285 -12.38673 -12.38329 -11.95188 -11.90091 -11.61121 -11.45316 -11.35084 -10.86070 -10.71827 -10.62955 -10.59984 -10.25508 -9.75263 -8.75556 -8.18179 -5.57440 -0.99521 0.01137 0.42419 1.18833 1.31883 1.46171 1.57330 1.71054 1.95168 2.44086 2.63192 3.02286 3.20319 3.31640 3.45026 3.56128 3.77240 3.82407 3.93930 4.09282 4.14828 4.23254 4.31453 4.35739 4.47957 4.53182 4.54365 4.60086 4.64611 4.72583 4.79558 4.84204 4.87603 4.90630 4.91292 5.01312 5.11115 5.16575 5.17600 5.41904 5.95717 6.05059 6.17470 6.22954 6.46296 6.80600 7.00373 7.63879 8.05163 9.02093 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002632 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.969434 B =10635.309631 C =11463.725183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.134 3.866 4 C 0.024 3.976 5 N -0.486 5.486 6 C 0.114 3.886 7 C -0.311 4.311 8 C 0.602 3.398 9 O -0.570 6.570 10 N -0.612 5.612 11 C 0.085 3.915 12 C -0.116 4.116 13 C -0.112 4.112 14 H 0.056 0.944 15 C 0.145 3.855 16 N -0.625 5.625 17 C 0.121 3.879 18 C -0.263 4.263 19 H 0.031 0.969 20 C -0.022 4.022 21 N -0.950 5.950 22 Si 0.947 3.053 23 H -0.257 1.257 24 H -0.312 1.312 25 H -0.260 1.260 26 C 0.128 3.872 27 S 0.280 5.720 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.187 0.813 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.017 0.983 41 H 0.028 0.972 42 H 0.062 0.938 43 H 0.264 0.736 44 H 0.051 0.949 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.275 15.180 -8.767 29.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.054 3.946 4 C -0.249 4.249 5 N -0.202 5.202 6 C -0.046 4.046 7 C -0.435 4.435 8 C 0.391 3.609 9 O -0.452 6.452 10 N -0.344 5.344 11 C -0.038 4.038 12 C -0.154 4.154 13 C -0.134 4.134 14 H 0.074 0.926 15 C 0.020 3.980 16 N -0.349 5.349 17 C -0.023 4.023 18 C -0.393 4.393 19 H 0.048 0.952 20 C -0.218 4.218 21 N -0.594 5.594 22 Si 0.775 3.225 23 H -0.183 1.183 24 H -0.241 1.241 25 H -0.184 1.184 26 C 0.006 3.994 27 S 0.538 5.462 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.204 0.796 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.263 14.937 -8.555 29.749 hybrid contribution 1.053 -0.326 -0.394 1.170 sum -23.210 14.611 -8.949 28.850 Atomic orbital electron populations 1.23018 0.77944 1.04243 1.01793 1.87925 1.22542 1.26913 1.95835 1.21080 0.82469 0.86244 1.04758 1.27843 1.02383 1.01419 0.93265 1.66276 1.04605 1.16544 1.32773 1.22229 0.91123 0.95521 0.95684 1.25694 0.98246 1.20528 0.99068 1.16626 0.86660 0.76558 0.81067 1.90820 1.46012 1.52985 1.55389 1.48510 1.10249 1.71066 1.04556 1.22446 0.91000 1.03385 0.86976 1.22707 0.94253 1.03177 0.95291 1.22844 0.96557 0.99716 0.94244 0.92559 1.21251 0.84566 0.96549 0.95621 1.44167 1.18598 1.17673 1.54459 1.21217 0.93145 0.95531 0.92421 1.18605 1.37882 0.89092 0.93714 0.95164 1.26135 0.98892 0.97662 0.99097 1.70026 1.51597 1.18808 1.18984 0.85793 0.78689 0.80447 0.77560 1.18334 1.24090 1.18388 1.22214 0.83321 1.00754 0.93070 1.83770 0.92892 1.62013 1.07517 0.92562 0.88685 0.91701 0.87367 0.88935 0.79585 0.87912 0.90069 0.88283 0.87715 0.90553 0.93743 0.96471 0.95355 0.91954 0.92753 0.93080 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.53 10.69 -148.98 -1.59 -8.12 16 3 C 0.13 1.63 6.51 71.24 0.46 2.09 16 4 C 0.02 0.45 7.01 88.46 0.62 1.07 16 5 N -0.49 -11.57 10.51 -190.29 -2.00 -13.57 16 6 C 0.11 2.88 11.09 84.23 0.93 3.81 16 7 C -0.31 -7.87 6.40 23.88 0.15 -7.72 16 8 C 0.60 18.97 7.82 86.45 0.68 19.64 16 9 O -0.57 -22.34 17.12 -4.31 -0.07 -22.42 16 10 N -0.61 -17.36 3.33 -816.52 -2.72 -20.08 16 11 C 0.08 1.71 5.19 86.73 0.45 2.16 16 12 C -0.12 -2.51 6.42 31.78 0.20 -2.31 16 13 C -0.11 -3.66 3.29 -9.41 -0.03 -3.69 16 14 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 15 C 0.15 5.44 4.02 86.38 0.35 5.78 16 16 N -0.62 -28.49 2.39 -726.93 -1.74 -30.23 16 17 C 0.12 4.72 10.35 127.77 1.32 6.04 16 18 C -0.26 -14.86 9.92 84.03 0.83 -14.02 16 19 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 20 C -0.02 -1.23 5.29 84.86 0.45 -0.78 16 21 N -0.95 -58.70 13.97 21.65 0.30 -58.40 16 22 Si 0.95 43.84 25.07 68.60 1.72 45.56 16 23 H -0.26 -10.66 6.68 99.48 0.66 -10.00 16 24 H -0.31 -14.90 7.11 99.48 0.71 -14.20 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 26 C 0.13 4.09 4.92 86.85 0.43 4.51 16 27 S 0.28 4.70 18.65 -56.49 -1.05 3.64 16 28 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.19 4.57 8.06 -2.91 -0.02 4.54 16 34 H 0.10 1.46 7.05 -2.39 -0.02 1.45 16 35 H 0.08 1.52 6.85 -2.38 -0.02 1.50 16 36 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.10 1.78 8.04 -2.39 -0.02 1.76 16 38 H 0.08 2.36 8.03 -2.38 -0.02 2.34 16 39 H 0.04 1.81 3.35 -2.38 -0.01 1.81 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.03 1.14 8.07 -2.39 -0.02 1.12 16 42 H 0.06 2.03 6.15 -2.38 -0.01 2.02 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 44 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 45 H 0.08 2.38 7.21 -2.39 -0.02 2.36 16 Total: -1.00 -77.67 374.22 1.90 -75.76 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.96 Total: 9.80 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 8.10 Total: 18.05 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -6.15 Total: -122.28 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.67 Total: -30.53 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.72 Total: 45.56 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -1.05 Total: 3.64 kcal Total: -77.67 1.90 -75.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267708545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.346 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds