Wall clock time and date at job start Tue Mar 31 2020 23:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99963 * 2 1 4 4 C 1.50703 * 109.46749 * 180.02562 * 3 2 1 5 5 N 1.29428 * 124.80666 * 90.02454 * 4 3 2 6 6 C 1.30940 * 117.36095 * 179.97438 * 5 4 3 7 7 C 1.35658 * 114.19469 * 0.02562 * 6 5 4 8 8 C 1.46691 * 126.13238 * 179.97438 * 7 6 5 9 9 O 1.21686 * 119.99487 * 353.20739 * 8 7 6 10 10 N 1.34766 * 119.99998 * 173.20037 * 8 7 6 11 11 C 1.47430 * 125.65203 * 3.62876 * 10 8 7 12 12 C 1.54912 * 104.83201 * 204.14871 * 11 10 8 13 13 C 1.55153 * 101.58062 * 322.98593 * 12 11 10 14 14 C 1.47026 * 125.64821 * 183.64445 * 10 8 7 15 15 H 1.09001 * 110.00532 * 59.43567 * 14 10 8 16 16 C 1.52995 * 109.88372 * 298.34134 * 14 10 8 17 17 N 1.46497 * 109.47021 * 175.84727 * 16 14 10 18 18 C 1.46501 * 120.00183 * 271.90925 * 17 16 14 19 19 C 1.36938 * 120.00086 * 91.90837 * 17 16 14 20 20 H 1.08000 * 120.00056 * 1.97458 * 19 17 16 21 21 C 1.38810 * 120.00151 * 181.96927 * 19 17 16 22 22 N 1.31620 * 120.00337 * 349.26433 * 21 19 17 23 23 Si 1.86800 * 120.00129 * 169.26430 * 21 19 17 24 24 H 1.48503 * 109.47175 * 270.00593 * 23 21 19 25 25 H 1.48501 * 109.47185 * 29.99721 * 23 21 19 26 26 H 1.48491 * 109.47416 * 150.00144 * 23 21 19 27 27 S 1.70955 * 124.79886 * 270.33628 * 4 3 2 28 28 H 1.09003 * 109.46905 * 300.00603 * 1 2 3 29 29 H 1.09009 * 109.46697 * 60.00040 * 1 2 3 30 30 H 1.08995 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47192 * 59.99578 * 3 2 1 32 32 H 1.09005 * 109.47097 * 299.99529 * 3 2 1 33 33 H 1.08004 * 122.90207 * 179.97438 * 6 5 4 34 34 H 1.08995 * 110.36870 * 85.30503 * 11 10 8 35 35 H 1.09004 * 110.36310 * 322.98286 * 11 10 8 36 36 H 1.09003 * 111.00047 * 204.91178 * 12 11 10 37 37 H 1.08996 * 111.00400 * 81.06052 * 12 11 10 38 38 H 1.09004 * 110.72169 * 277.14226 * 13 12 11 39 39 H 1.08997 * 110.87487 * 153.93757 * 13 12 11 40 40 H 1.08998 * 109.47107 * 55.84681 * 16 14 10 41 41 H 1.08997 * 109.47282 * 295.84595 * 16 14 10 42 42 H 1.09002 * 109.47321 * 239.12941 * 18 17 16 43 43 H 1.08999 * 109.46836 * 359.12581 * 18 17 16 44 44 H 1.08997 * 109.47121 * 119.12792 * 18 17 16 45 45 H 0.96998 * 120.00206 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2487 1.1287 -1.0637 6 6 5.5431 1.0265 -0.8945 7 6 5.9333 0.9947 0.4043 8 6 7.3129 0.8851 0.8906 9 8 8.2211 0.6885 0.1049 10 7 7.5745 1.0021 2.2074 11 6 6.5681 1.1651 3.2723 12 6 7.3271 1.8552 4.4331 13 6 8.7205 1.1792 4.3396 14 6 8.9110 0.9887 2.8200 15 1 9.5140 1.8025 2.4172 16 6 9.5959 -0.3515 2.5454 17 7 10.9621 -0.3189 3.0733 18 6 12.0583 0.1791 2.2386 19 6 11.2146 -0.7539 4.3469 20 1 10.4121 -1.1507 4.9511 21 6 12.5019 -0.6850 4.8615 22 7 13.5138 -0.4041 4.0680 23 14 12.7984 -0.9908 6.6803 24 1 12.7005 0.2929 7.4205 25 1 11.7777 -1.9382 7.1958 26 1 14.1524 -1.5700 6.8707 27 16 4.4851 1.1008 1.4027 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8464 -0.8901 33 1 6.2398 0.9714 -1.7180 34 1 6.1914 0.1930 3.5903 35 1 5.7489 1.7957 2.9268 36 1 6.8529 1.6422 5.3912 37 1 7.4022 2.9298 4.2665 38 1 8.7174 0.2169 4.8514 39 1 9.4953 1.8286 4.7469 40 1 9.6259 -0.5308 1.4707 41 1 9.0375 -1.1513 3.0317 42 1 12.8078 -0.6032 2.1185 43 1 11.6699 0.4633 1.2606 44 1 12.5126 1.0475 2.7156 45 1 14.4133 -0.3556 4.4277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281967571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:23 Heat of formation + Delta-G solvation = -9.593050 kcal Electronic energy + Delta-G solvation = -27326.277555 eV Core-core repulsion = 23471.704655 eV Total energy + Delta-G solvation = -3854.572900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53134 -40.72941 -38.88153 -38.53409 -37.21906 -33.72131 -33.00132 -32.25305 -30.73109 -29.39892 -28.02306 -27.15988 -26.84937 -25.38419 -24.31941 -22.95698 -22.69766 -21.12957 -19.98911 -19.44916 -18.88775 -17.83482 -17.71292 -17.53154 -17.04086 -16.56237 -16.52015 -16.10594 -15.79390 -15.55274 -15.44797 -15.06931 -14.96560 -14.59675 -14.34331 -14.06196 -13.74183 -13.66346 -13.51991 -13.24609 -12.88345 -12.81998 -12.75182 -12.63645 -12.36777 -12.31334 -12.21844 -12.03012 -11.90170 -11.59708 -11.52442 -11.22594 -10.81630 -10.64630 -10.64018 -10.58954 -10.20077 -9.79184 -8.91796 -7.70939 -5.16336 -0.95978 0.02993 0.44201 1.23471 1.49927 1.51475 1.60009 1.74975 1.99770 2.54620 2.65533 3.23274 3.35252 3.40433 3.54092 3.78729 3.80083 3.87624 4.02449 4.12208 4.21555 4.25260 4.36418 4.39662 4.43239 4.53568 4.54885 4.61522 4.77163 4.85332 4.88295 4.91807 4.92337 5.05026 5.08246 5.12274 5.38645 5.41247 5.50997 5.62576 5.80250 6.06761 6.29098 6.33214 6.50295 6.90380 7.17018 7.87701 8.31208 9.28095 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.002578 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.880026 B =10859.871781 C =11501.316071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.134 3.866 4 C 0.019 3.981 5 N -0.486 5.486 6 C 0.112 3.888 7 C -0.308 4.308 8 C 0.599 3.401 9 O -0.567 6.567 10 N -0.606 5.606 11 C 0.084 3.916 12 C -0.116 4.116 13 C -0.105 4.105 14 C 0.126 3.874 15 H 0.045 0.955 16 C 0.152 3.848 17 N -0.619 5.619 18 C 0.188 3.812 19 C -0.240 4.240 20 H 0.088 0.912 21 C -0.067 4.067 22 N -0.950 5.950 23 Si 0.973 3.027 24 H -0.284 1.284 25 H -0.265 1.265 26 H -0.303 1.303 27 S 0.285 5.715 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.184 0.816 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.049 0.951 42 H 0.027 0.973 43 H 0.004 0.996 44 H 0.009 0.991 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.127 7.079 -1.189 30.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.055 3.945 4 C -0.254 4.254 5 N -0.202 5.202 6 C -0.047 4.047 7 C -0.433 4.433 8 C 0.387 3.613 9 O -0.448 6.448 10 N -0.338 5.338 11 C -0.039 4.039 12 C -0.153 4.153 13 C -0.143 4.143 14 C 0.021 3.979 15 H 0.063 0.937 16 C 0.025 3.975 17 N -0.343 5.343 18 C 0.043 3.957 19 C -0.369 4.369 20 H 0.106 0.894 21 C -0.260 4.260 22 N -0.600 5.600 23 Si 0.802 3.198 24 H -0.211 1.211 25 H -0.190 1.190 26 H -0.230 1.230 27 S 0.544 5.456 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.201 0.799 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.022 0.978 44 H 0.027 0.973 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -29.966 6.818 -1.041 30.749 hybrid contribution 1.652 -0.094 -0.540 1.740 sum -28.314 6.724 -1.581 29.145 Atomic orbital electron populations 1.23022 0.77960 1.04258 1.01769 1.87923 1.22523 1.26888 1.95830 1.21066 0.82504 0.86228 1.04686 1.27946 1.02420 1.01335 0.93703 1.66274 1.04542 1.16519 1.32914 1.22188 0.91144 0.95682 0.95701 1.25708 0.98210 1.20250 0.99102 1.16716 0.86528 0.76856 0.81187 1.90838 1.46921 1.51346 1.55706 1.48580 1.09419 1.70636 1.05187 1.22883 0.90955 1.02393 0.87690 1.22824 0.93725 1.00143 0.98657 1.22456 0.97927 1.01971 0.91993 1.22303 0.81921 0.98932 0.94753 0.93705 1.21045 0.85062 0.94860 0.96544 1.44181 1.02265 1.74214 1.13620 1.20677 0.88920 0.97078 0.89018 1.19643 0.93994 1.33821 0.89450 0.89439 1.25689 0.95659 1.02502 1.02103 1.70447 0.98568 1.56959 1.34036 0.85151 0.76660 0.77740 0.80264 1.21056 1.18953 1.23027 1.83660 0.92446 1.62356 1.07161 0.91641 0.92688 0.88616 0.87289 0.89168 0.79911 0.88730 0.88874 0.86233 0.89735 0.90647 0.91253 0.94991 0.93289 0.95466 0.97760 0.97254 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -6.45 10.69 -148.98 -1.59 -8.04 16 3 C 0.13 1.66 6.51 71.24 0.46 2.12 16 4 C 0.02 0.37 7.02 88.46 0.62 0.99 16 5 N -0.49 -12.06 10.51 -190.30 -2.00 -14.06 16 6 C 0.11 3.00 11.10 84.23 0.93 3.93 16 7 C -0.31 -8.22 6.38 23.88 0.15 -8.06 16 8 C 0.60 20.28 7.63 86.45 0.66 20.94 16 9 O -0.57 -24.25 15.72 -4.30 -0.07 -24.32 16 10 N -0.61 -18.45 3.06 -792.70 -2.43 -20.88 16 11 C 0.08 1.66 5.64 86.86 0.49 2.15 16 12 C -0.12 -2.19 7.09 31.99 0.23 -1.96 16 13 C -0.11 -3.20 5.62 31.78 0.18 -3.02 16 14 C 0.13 4.65 3.14 45.34 0.14 4.79 16 15 H 0.04 1.89 8.14 -2.39 -0.02 1.88 16 16 C 0.15 6.77 5.11 86.38 0.44 7.21 16 17 N -0.62 -32.38 2.85 -726.96 -2.07 -34.46 16 18 C 0.19 10.35 9.00 127.77 1.15 11.50 16 19 C -0.24 -12.86 8.73 84.03 0.73 -12.12 16 20 H 0.09 4.37 7.18 -2.91 -0.02 4.35 16 21 C -0.07 -3.74 5.41 84.86 0.46 -3.28 16 22 N -0.95 -57.24 9.54 21.65 0.21 -57.04 16 23 Si 0.97 44.55 29.57 68.60 2.03 46.58 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 27 S 0.29 4.84 18.75 -56.49 -1.06 3.78 16 28 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.18 4.88 8.06 -2.91 -0.02 4.86 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.41 4.98 -16.67 -0.08 1.33 16 36 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 2.42 6.79 -2.38 -0.02 2.40 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.03 1.55 6.43 -2.39 -0.02 1.53 16 41 H 0.05 2.09 7.92 -2.39 -0.02 2.08 16 42 H 0.03 1.63 6.78 -2.39 -0.02 1.61 16 43 H 0.00 0.20 7.81 -2.39 -0.02 0.18 16 44 H 0.01 0.53 7.32 -2.39 -0.02 0.51 16 45 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -76.11 374.39 1.84 -74.27 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.93 Total: 7.56 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 7.90 Total: 26.62 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -6.30 Total: -126.44 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.66 Total: -32.36 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.06 Total: 3.78 kcal Total: -76.11 1.84 -74.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281967571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.674 kcal (2) G-P(sol) polarization free energy of solvation -76.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds