Wall clock time and date at job start Tue Mar 31 2020 22:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47162 * 2 1 4 4 C 1.47196 * 109.47470 * 120.00338 * 2 1 3 5 5 N 2.60804 * 109.47413 * 120.00381 * 2 1 3 6 6 C 1.50703 * 109.47006 * 240.00379 * 2 1 3 7 7 O 1.21277 * 120.00063 * 239.99599 * 6 2 1 8 8 N 1.34773 * 119.99847 * 60.00040 * 6 2 1 9 9 C 1.46504 * 120.00111 * 179.97438 * 8 6 2 10 10 H 1.09001 * 109.46891 * 325.00262 * 9 8 6 11 11 C 1.53006 * 109.46883 * 84.99828 * 9 8 6 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 9 14 14 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 15 15 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 16 16 C 1.34782 * 120.00074 * 155.00031 * 15 13 12 17 17 O 1.21279 * 119.99782 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00040 * 179.97438 * 16 15 13 19 19 S 1.80995 * 109.46890 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99752 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00112 * 0.02562 * 20 19 18 22 22 C 1.38806 * 119.99811 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99932 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99823 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47275 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46858 * 119.99981 * 24 22 20 27 27 H 1.48494 * 109.47563 * 240.00306 * 24 22 20 28 28 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 29 29 C 1.52997 * 109.47417 * 204.99914 * 9 8 6 30 30 H 1.09004 * 109.46647 * 299.99856 * 1 2 3 31 31 H 1.09002 * 109.47281 * 59.99351 * 1 2 3 32 32 H 1.08990 * 109.47466 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00265 * 0.02562 * 8 6 2 34 34 H 1.08998 * 109.46505 * 59.99948 * 11 9 8 35 35 H 1.08996 * 109.46884 * 300.00829 * 11 9 8 36 36 H 1.09002 * 109.47153 * 180.02562 * 12 11 9 37 37 H 1.09001 * 109.46832 * 60.00321 * 12 11 9 38 38 H 0.97002 * 120.00427 * 334.99530 * 15 13 12 39 39 H 1.09002 * 109.47083 * 299.99967 * 18 16 15 40 40 H 1.09003 * 109.46851 * 59.99654 * 18 16 15 41 41 H 0.97005 * 119.99713 * 179.97438 * 23 22 20 42 42 H 1.08992 * 109.47554 * 59.99639 * 28 13 12 43 43 H 1.09004 * 109.47108 * 179.97438 * 28 13 12 44 44 H 1.09002 * 109.47045 * 60.00127 * 29 9 8 45 45 H 1.09001 * 109.47375 * 300.00052 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2296 2.1293 6 6 2.0323 -0.7103 -1.2305 7 8 2.7296 -1.6964 -1.1194 8 7 1.7067 -0.2498 -2.4546 9 6 2.1954 -0.9400 -3.6509 10 1 3.1947 -1.3318 -3.4614 11 6 1.2518 -2.0942 -3.9950 12 6 1.7625 -2.8154 -5.2439 13 6 1.8143 -1.8323 -6.4152 14 1 0.8150 -1.4405 -6.6050 15 7 2.3027 -2.5231 -7.6112 16 6 1.9774 -2.0627 -8.8354 17 8 1.2799 -1.0768 -8.9469 18 6 2.4803 -2.7730 -10.0658 19 16 1.8766 -1.9203 -11.5437 20 6 2.5928 -2.9331 -12.7952 21 1 3.1957 -3.7859 -12.5203 22 6 2.3820 -2.6348 -14.1343 23 7 1.6476 -1.5951 -14.4693 24 14 3.1418 -3.7080 -15.4610 25 1 3.9169 -4.8046 -14.8271 26 1 2.0663 -4.2869 -16.3056 27 1 4.0458 -2.8862 -16.3052 28 6 2.7579 -0.6782 -6.0711 29 6 2.2466 0.0433 -4.8219 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0275 0.0005 33 1 1.1493 0.5391 -2.5435 34 1 0.2525 -1.7023 -4.1843 35 1 1.2153 -2.7946 -3.1607 36 1 1.0900 -3.6374 -5.4893 37 1 2.7617 -3.2073 -5.0540 38 1 2.8603 -3.3118 -7.5221 39 1 3.5703 -2.7727 -10.0654 40 1 2.1173 -3.8008 -10.0658 41 1 1.5006 -1.3865 -15.4052 42 1 3.7571 -1.0701 -5.8812 43 1 2.7951 0.0219 -6.9057 44 1 2.9189 0.8656 -4.5767 45 1 1.2473 0.4352 -5.0113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285166278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:53 Heat of formation + Delta-G solvation = -68.988009 kcal Electronic energy + Delta-G solvation = -25884.979907 eV Core-core repulsion = 22027.831448 eV Total energy + Delta-G solvation = -3857.148459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85830 -39.67932 -38.12636 -36.95184 -35.19872 -34.09072 -32.76965 -32.44171 -31.14959 -29.85036 -27.78083 -25.87649 -25.48191 -23.29758 -22.82949 -21.22631 -20.53483 -20.19437 -18.57686 -17.88896 -17.71733 -16.63356 -16.31348 -16.22301 -15.91376 -15.19564 -14.83646 -14.81591 -14.60537 -14.23363 -14.18578 -14.00420 -13.64217 -13.47989 -13.26071 -13.14840 -12.98688 -12.88043 -12.63105 -12.53709 -12.43420 -12.12198 -12.00422 -11.89772 -11.51883 -11.48096 -11.08510 -11.03438 -10.95933 -10.77414 -10.61654 -10.35690 -9.81530 -9.56375 -9.39570 -9.09125 -8.89584 -8.24991 -6.51430 -6.23446 -3.93746 1.94987 1.98155 2.31980 2.77203 3.02639 3.07315 3.20531 3.24465 3.27558 3.32198 3.69568 4.02819 4.17245 4.19109 4.29836 4.34489 4.40371 4.67310 4.78548 4.84748 4.88252 4.97407 5.08069 5.09365 5.12142 5.13551 5.19851 5.33957 5.39504 5.43255 5.60333 5.70980 5.71975 5.77809 5.83203 5.88138 5.97920 6.07742 6.12851 6.14945 6.65225 6.84877 7.08265 7.58657 7.59509 7.70663 8.34058 8.60149 9.22337 10.84039 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.045327 B = 0.001619 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.580906 B =17286.754625 C =17547.393423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.012 4.012 3 H 0.142 0.858 4 C 0.219 3.781 5 N -0.410 5.410 6 C 0.523 3.477 7 O -0.525 6.525 8 N -0.718 5.718 9 C 0.143 3.857 10 H 0.092 0.908 11 C -0.124 4.124 12 C -0.124 4.124 13 C 0.146 3.854 14 H 0.089 0.911 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.128 4.128 29 C -0.122 4.122 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.404 0.596 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 4.675 27.131 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 H 0.159 0.841 4 C -0.100 4.100 5 N -0.085 5.085 6 C 0.306 3.694 7 O -0.401 6.401 8 N -0.369 5.369 9 C 0.039 3.961 10 H 0.110 0.890 11 C -0.163 4.163 12 C -0.162 4.162 13 C 0.040 3.960 14 H 0.107 0.893 15 N -0.389 5.389 16 C 0.320 3.680 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.167 4.167 29 C -0.161 4.161 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.239 0.761 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.150 4.900 28.273 28.775 hybrid contribution 1.209 -1.603 -1.146 2.312 sum -0.941 3.297 27.127 27.343 Atomic orbital electron populations 1.21817 0.89423 1.04484 1.04587 1.18856 0.98889 1.00251 0.85643 0.84102 1.28079 0.93904 0.94022 0.94015 1.81221 1.07564 1.07707 1.12035 1.19991 0.80473 0.84703 0.84233 1.90808 1.37073 1.25700 1.86472 1.45981 1.53711 1.32111 1.05131 1.21151 0.98944 0.92686 0.83283 0.89012 1.21848 0.99347 0.97414 0.97726 1.21759 1.02473 0.98271 0.93720 1.20920 0.98812 0.92164 0.84055 0.89318 1.46081 1.55164 1.32467 1.05201 1.20307 0.79543 0.84303 0.83887 1.90689 1.36597 1.25622 1.86307 1.23544 1.04406 1.03928 0.98640 1.85367 1.67578 1.38512 0.91963 1.22917 1.37216 1.15610 0.92608 0.90880 1.24989 0.95047 0.95572 0.97957 1.70026 1.36419 1.25785 1.18067 0.86119 0.78878 0.79844 0.80672 1.19621 1.20567 1.20563 1.21899 0.99327 0.98119 0.97335 1.21770 1.02752 0.97828 0.93706 0.90145 0.89711 0.90915 0.76124 0.91149 0.90984 0.90748 0.91121 0.76843 0.89248 0.89261 0.92241 0.91490 0.90283 0.90865 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.14 9.04 37.16 0.34 0.20 16 2 C -0.01 -0.04 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 -0.05 8.14 -51.93 -0.42 -0.47 16 4 C 0.22 1.73 13.88 -20.76 -0.29 1.44 16 5 N -0.41 -4.65 18.54 42.16 0.78 -3.87 16 6 C 0.52 3.21 7.10 -10.99 -0.08 3.13 16 7 O -0.53 -5.92 15.69 5.56 0.09 -5.83 16 8 N -0.72 -2.85 4.97 -53.80 -0.27 -3.12 16 9 C 0.14 0.87 2.45 -67.93 -0.17 0.70 16 10 H 0.09 0.73 7.58 -51.93 -0.39 0.34 16 11 C -0.12 -0.82 5.49 -26.73 -0.15 -0.97 16 12 C -0.12 -0.94 5.39 -26.73 -0.14 -1.08 16 13 C 0.15 1.47 2.45 -67.93 -0.17 1.30 16 14 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 15 N -0.74 -8.96 5.08 -53.81 -0.27 -9.23 16 16 C 0.53 9.37 7.81 -10.98 -0.09 9.28 16 17 O -0.52 -11.05 15.52 5.56 0.09 -10.97 16 18 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 24 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C -0.13 -1.16 5.50 -26.71 -0.15 -1.31 16 29 C -0.12 -0.75 5.39 -26.71 -0.14 -0.89 16 30 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.08 -0.10 7.56 -51.93 -0.39 -0.49 16 32 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.40 0.31 8.02 -40.82 -0.33 -0.01 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.40 3.81 8.60 -40.82 -0.35 3.46 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -38.81 394.55 -7.94 -46.75 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.90 Total: -2.78 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.90 Total: -4.12 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.97 Total: -41.35 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.17 Total: -16.80 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.81 -7.94 -46.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285166278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.237 kcal (2) G-P(sol) polarization free energy of solvation -38.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds