Wall clock time and date at job start Tue Mar 31 2020 22:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47162 * 2 1 4 4 C 1.47196 * 109.47470 * 120.00338 * 2 1 3 5 5 N 2.60804 * 109.47413 * 120.00381 * 2 1 3 6 6 C 1.50703 * 109.47006 * 240.00379 * 2 1 3 7 7 O 1.21277 * 120.00063 * 239.99599 * 6 2 1 8 8 N 1.34773 * 119.99847 * 60.00040 * 6 2 1 9 9 C 1.46504 * 120.00111 * 179.97438 * 8 6 2 10 10 H 1.09001 * 109.46891 * 325.00262 * 9 8 6 11 11 C 1.53006 * 109.46883 * 84.99828 * 9 8 6 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 9 14 14 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 15 15 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 16 16 C 1.34782 * 120.00074 * 155.00031 * 15 13 12 17 17 O 1.21279 * 119.99782 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00040 * 179.97438 * 16 15 13 19 19 S 1.80995 * 109.46890 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99752 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00112 * 0.02562 * 20 19 18 22 22 C 1.38806 * 119.99811 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99932 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99823 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47275 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46858 * 119.99981 * 24 22 20 27 27 H 1.48494 * 109.47563 * 240.00306 * 24 22 20 28 28 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 29 29 C 1.52997 * 109.47417 * 204.99914 * 9 8 6 30 30 H 1.09004 * 109.46647 * 299.99856 * 1 2 3 31 31 H 1.09002 * 109.47281 * 59.99351 * 1 2 3 32 32 H 1.08990 * 109.47466 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00265 * 0.02562 * 8 6 2 34 34 H 1.08998 * 109.46505 * 59.99948 * 11 9 8 35 35 H 1.08996 * 109.46884 * 300.00829 * 11 9 8 36 36 H 1.09002 * 109.47153 * 180.02562 * 12 11 9 37 37 H 1.09001 * 109.46832 * 60.00321 * 12 11 9 38 38 H 0.97002 * 120.00427 * 334.99530 * 15 13 12 39 39 H 1.09002 * 109.47083 * 299.99967 * 18 16 15 40 40 H 1.09003 * 109.46851 * 59.99654 * 18 16 15 41 41 H 0.97005 * 119.99713 * 179.97438 * 23 22 20 42 42 H 1.08992 * 109.47554 * 59.99639 * 28 13 12 43 43 H 1.09004 * 109.47108 * 179.97438 * 28 13 12 44 44 H 1.09002 * 109.47045 * 60.00127 * 29 9 8 45 45 H 1.09001 * 109.47375 * 300.00052 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2296 2.1293 6 6 2.0323 -0.7103 -1.2305 7 8 2.7296 -1.6964 -1.1194 8 7 1.7067 -0.2498 -2.4546 9 6 2.1954 -0.9400 -3.6509 10 1 3.1947 -1.3318 -3.4614 11 6 1.2518 -2.0942 -3.9950 12 6 1.7625 -2.8154 -5.2439 13 6 1.8143 -1.8323 -6.4152 14 1 0.8150 -1.4405 -6.6050 15 7 2.3027 -2.5231 -7.6112 16 6 1.9774 -2.0627 -8.8354 17 8 1.2799 -1.0768 -8.9469 18 6 2.4803 -2.7730 -10.0658 19 16 1.8766 -1.9203 -11.5437 20 6 2.5928 -2.9331 -12.7952 21 1 3.1957 -3.7859 -12.5203 22 6 2.3820 -2.6348 -14.1343 23 7 1.6476 -1.5951 -14.4693 24 14 3.1418 -3.7080 -15.4610 25 1 3.9169 -4.8046 -14.8271 26 1 2.0663 -4.2869 -16.3056 27 1 4.0458 -2.8862 -16.3052 28 6 2.7579 -0.6782 -6.0711 29 6 2.2466 0.0433 -4.8219 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0275 0.0005 33 1 1.1493 0.5391 -2.5435 34 1 0.2525 -1.7023 -4.1843 35 1 1.2153 -2.7946 -3.1607 36 1 1.0900 -3.6374 -5.4893 37 1 2.7617 -3.2073 -5.0540 38 1 2.8603 -3.3118 -7.5221 39 1 3.5703 -2.7727 -10.0654 40 1 2.1173 -3.8008 -10.0658 41 1 1.5006 -1.3865 -15.4052 42 1 3.7571 -1.0701 -5.8812 43 1 2.7951 0.0219 -6.9057 44 1 2.9189 0.8656 -4.5767 45 1 1.2473 0.4352 -5.0113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285166278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:53 Heat of formation + Delta-G solvation = -98.043491 kcal Electronic energy + Delta-G solvation = -25886.239848 eV Core-core repulsion = 22027.831448 eV Total energy + Delta-G solvation = -3858.408399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43603 -40.74993 -39.02163 -37.62970 -35.99910 -34.69297 -34.57156 -33.52940 -31.77391 -31.10062 -28.75403 -27.62099 -26.11001 -23.98685 -23.50113 -21.88313 -21.42838 -21.18089 -19.78941 -19.05223 -18.17857 -17.72654 -17.54412 -16.90485 -16.86835 -16.40800 -16.33933 -15.94061 -15.59979 -15.15845 -14.91832 -14.79420 -14.57493 -14.54052 -14.19265 -14.04722 -13.86366 -13.69787 -13.39680 -13.22542 -13.14742 -13.14083 -12.90864 -12.76335 -12.72961 -12.52722 -12.37309 -12.20352 -12.07903 -11.70202 -11.67283 -11.30405 -11.14888 -10.96560 -10.78219 -10.25710 -10.10043 -9.97748 -8.64406 -8.34117 -6.11268 1.28921 1.41768 1.43915 1.48745 1.51227 1.59701 1.66428 1.74198 2.24601 2.28657 2.39937 2.83196 3.00239 3.33745 3.61743 3.73395 3.78872 3.97889 3.98557 4.03610 4.19532 4.21877 4.25538 4.33487 4.44257 4.47596 4.53610 4.54229 4.75224 4.80779 4.86832 4.90421 5.03861 5.13211 5.19089 5.19732 5.31761 5.34814 5.36685 5.43276 5.53593 5.60695 6.20952 6.42723 6.56724 6.59497 7.07761 7.21728 7.30329 8.75261 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.045327 B = 0.001619 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.580906 B =17286.754625 C =17547.393423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.004 4.004 3 H 0.188 0.812 4 C 0.241 3.759 5 N -0.481 5.481 6 C 0.524 3.476 7 O -0.582 6.582 8 N -0.699 5.699 9 C 0.149 3.851 10 H 0.075 0.925 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.144 3.856 14 H 0.072 0.928 15 N -0.712 5.712 16 C 0.536 3.464 17 O -0.562 6.562 18 C -0.132 4.132 19 S -0.148 6.148 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.125 4.125 29 C -0.112 4.112 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.055 0.945 33 H 0.424 0.576 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.414 0.586 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 4.642 27.894 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 H 0.205 0.795 4 C -0.077 4.077 5 N -0.157 5.157 6 C 0.309 3.691 7 O -0.462 6.462 8 N -0.351 5.351 9 C 0.044 3.956 10 H 0.093 0.907 11 C -0.158 4.158 12 C -0.154 4.154 13 C 0.040 3.960 14 H 0.090 0.910 15 N -0.365 5.365 16 C 0.322 3.678 17 O -0.440 6.440 18 C -0.284 4.284 19 S 0.079 5.921 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.182 1.182 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.165 4.165 29 C -0.150 4.150 30 H 0.112 0.888 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.262 0.738 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.250 0.750 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.967 4.875 29.075 29.547 hybrid contribution 1.141 -1.586 -1.298 2.346 sum -0.825 3.289 27.777 27.983 Atomic orbital electron populations 1.21906 0.87227 1.04137 1.06803 1.19201 1.00306 1.01278 0.81976 0.79486 1.29001 0.92097 0.92588 0.94047 1.81228 1.09985 1.09961 1.14573 1.20434 0.79461 0.83946 0.85301 1.90800 1.39778 1.28323 1.87256 1.45763 1.53153 1.32282 1.03915 1.20942 0.98113 0.92612 0.83889 0.90690 1.21797 0.99977 0.97370 0.96692 1.21691 1.03097 0.97665 0.92903 1.21098 0.98132 0.93094 0.83656 0.90991 1.45885 1.53975 1.32474 1.04171 1.19978 0.79300 0.83704 0.84815 1.90678 1.38827 1.27523 1.86953 1.23402 1.05202 1.03840 0.95931 1.85505 1.69043 1.41139 0.96364 1.23250 1.37260 1.15765 0.93241 0.90066 1.26091 0.95354 0.96947 1.00614 1.70181 1.37961 1.27776 1.18764 0.84927 0.78039 0.77992 0.77128 1.18177 1.19936 1.19924 1.21835 0.99594 0.97253 0.97782 1.21675 1.03527 0.97725 0.92075 0.88828 0.86631 0.92580 0.73762 0.90077 0.91793 0.90571 0.90398 0.74953 0.87463 0.87474 0.91990 0.90867 0.93156 0.89499 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.20 9.04 71.98 0.65 0.85 16 2 C 0.00 -0.01 3.10 -13.35 -0.04 -0.05 16 3 H 0.19 -1.02 8.14 -2.39 -0.02 -1.04 16 4 C 0.24 3.60 13.88 89.44 1.24 4.85 16 5 N -0.48 -11.15 18.54 20.01 0.37 -10.78 16 6 C 0.52 5.31 7.10 87.66 0.62 5.94 16 7 O -0.58 -12.79 15.69 -3.02 -0.05 -12.83 16 8 N -0.70 -3.44 4.97 -442.52 -2.20 -5.64 16 9 C 0.15 1.48 2.45 44.99 0.11 1.59 16 10 H 0.07 1.08 7.58 -2.39 -0.02 1.06 16 11 C -0.12 -1.34 5.49 30.60 0.17 -1.18 16 12 C -0.11 -1.53 5.39 30.59 0.16 -1.37 16 13 C 0.14 2.73 2.45 44.99 0.11 2.84 16 14 H 0.07 1.67 7.58 -2.39 -0.02 1.65 16 15 N -0.71 -16.40 5.08 -442.53 -2.25 -18.65 16 16 C 0.54 18.66 7.81 87.66 0.68 19.35 16 17 O -0.56 -24.47 15.52 -3.03 -0.05 -24.52 16 18 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 19 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 20 C -0.55 -30.97 9.50 67.96 0.65 -30.32 16 21 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 22 C 0.01 0.83 5.49 84.86 0.47 1.30 16 23 N -0.91 -55.29 13.22 21.65 0.29 -55.01 16 24 Si 1.00 43.23 29.55 68.60 2.03 45.25 16 25 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 28 C -0.13 -2.13 5.50 30.61 0.17 -1.96 16 29 C -0.11 -1.11 5.39 30.61 0.17 -0.94 16 30 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.12 -0.84 7.56 -2.39 -0.02 -0.85 16 32 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.42 -1.16 8.02 -92.71 -0.74 -1.91 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.41 7.00 8.60 -92.71 -0.80 6.20 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 41 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -90.34 394.55 2.06 -88.28 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -0.52 Total: 6.86 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.60 Total: -3.77 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -3.79 Total: -90.07 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.09 Total: -37.35 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -90.34 2.06 -88.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285166278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.762 kcal (2) G-P(sol) polarization free energy of solvation -90.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds