Wall clock time and date at job start Tue Mar 31 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.47216 * 2 1 4 4 C 1.46499 * 120.00012 * 90.00076 * 3 2 1 5 5 C 1.53004 * 109.47198 * 270.00064 * 4 3 2 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21623 * 120.00244 * 359.72094 * 7 6 5 9 9 C 1.47263 * 119.99630 * 179.72408 * 7 6 5 10 10 C 1.46690 * 126.94246 * 0.02562 * 9 7 6 11 11 C 1.34493 * 106.32930 * 179.97438 * 10 9 7 12 12 N 1.36448 * 108.85812 * 0.02562 * 11 10 9 13 13 H 0.96992 * 124.84803 * 180.02562 * 12 11 10 14 14 C 1.34664 * 110.29566 * 359.74434 * 12 11 10 15 15 C 1.50696 * 125.79840 * 180.29276 * 14 12 11 16 16 C 1.34773 * 119.99855 * 270.00208 * 3 2 1 17 17 O 1.21287 * 119.99643 * 179.97438 * 16 3 2 18 18 C 1.50700 * 120.00245 * 359.97438 * 16 3 2 19 19 S 1.81000 * 109.47134 * 179.97438 * 18 16 3 20 20 C 1.76200 * 99.99948 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99825 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99706 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00103 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47120 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47302 * 120.00082 * 24 22 20 27 27 H 1.48501 * 109.47431 * 239.99966 * 24 22 20 28 28 H 1.08999 * 109.47207 * 300.00256 * 1 2 3 29 29 H 1.09000 * 109.47106 * 59.99699 * 1 2 3 30 30 H 1.09002 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47343 * 240.00279 * 2 1 3 32 32 H 1.08993 * 109.47392 * 120.00042 * 2 1 3 33 33 H 1.08995 * 109.47424 * 150.00425 * 4 3 2 34 34 H 1.09006 * 109.46868 * 29.99976 * 4 3 2 35 35 H 1.09009 * 109.46730 * 59.99787 * 5 4 3 36 36 H 1.08998 * 109.46846 * 300.00332 * 5 4 3 37 37 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 38 38 H 1.07994 * 126.83701 * 359.96163 * 10 9 7 39 39 H 1.08002 * 125.56811 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.47617 * 270.13867 * 15 14 12 41 41 H 1.09003 * 109.47145 * 30.14297 * 15 14 12 42 42 H 1.09003 * 109.46917 * 150.13706 * 15 14 12 43 43 H 1.08996 * 109.47045 * 299.99944 * 18 16 3 44 44 H 1.08998 * 109.47351 * 60.00086 * 18 16 3 45 45 H 0.97004 * 119.99709 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9875 2.7931 1.7104 6 7 1.2315 3.4832 2.9795 7 6 0.2417 4.1852 3.5659 8 8 -0.8526 4.2500 3.0391 9 6 0.4852 4.8739 4.8446 10 6 1.7373 4.8980 5.6085 11 6 1.4989 5.6439 6.7019 12 7 0.2050 6.0757 6.6677 13 1 -0.2118 6.6319 7.3443 14 6 -0.4088 5.6245 5.5572 15 6 -1.8385 5.8981 5.1673 16 6 2.2429 2.0166 -1.1672 17 8 2.6468 3.1602 -1.1671 18 6 1.9922 1.3060 -2.4723 19 16 2.3834 2.4153 -3.8480 20 6 2.0115 1.3587 -5.2082 21 1 1.6571 0.3542 -5.0305 22 6 2.1731 1.8179 -6.5081 23 7 2.6046 3.0424 -6.7246 24 14 1.7782 0.6980 -7.9501 25 1 1.3139 -0.6179 -7.4422 26 1 0.7095 1.3139 -8.7770 27 1 2.9966 0.5080 -8.7775 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.0643 2.7985 1.1384 34 1 2.5506 1.3451 2.0284 35 1 0.1855 2.0664 1.8407 36 1 0.6994 3.5197 0.9508 37 1 2.1042 3.4312 3.3998 38 1 2.6657 4.4131 5.3454 39 1 2.2144 5.8643 7.4803 40 1 -2.4832 5.1237 5.5830 41 1 -2.1414 6.8704 5.5560 42 1 -1.9251 5.8984 4.0807 43 1 2.6227 0.4188 -2.5299 44 1 0.9444 1.0115 -2.5303 45 1 2.7171 3.3634 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296284490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:34 Heat of formation + Delta-G solvation = -32.297225 kcal Electronic energy + Delta-G solvation = -26157.783120 eV Core-core repulsion = 22302.225693 eV Total energy + Delta-G solvation = -3855.557427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52863 -39.76687 -38.95941 -36.10281 -34.73719 -32.40525 -31.91416 -31.72256 -30.86374 -29.77724 -27.98414 -26.51773 -25.46126 -23.59486 -23.29602 -22.04369 -20.92444 -19.94210 -18.94240 -17.99189 -17.68002 -16.77703 -16.34820 -16.13058 -15.54477 -15.43657 -15.04272 -14.78266 -14.68470 -14.11336 -13.88695 -13.76423 -13.65200 -13.49014 -13.35389 -13.24167 -12.99841 -12.92674 -12.82384 -12.53964 -12.25498 -11.87984 -11.79456 -11.74688 -11.41974 -11.05949 -10.98784 -10.93708 -10.72611 -9.94051 -9.77220 -9.36263 -9.24468 -9.05040 -9.00918 -8.63296 -8.47520 -8.19080 -6.47227 -6.19328 -3.89559 1.53228 2.11112 2.66093 2.89167 3.05956 3.23336 3.24837 3.32098 3.43927 3.47214 3.70522 4.22442 4.50940 4.65306 4.70811 4.80576 4.88999 4.92940 4.99099 5.11326 5.15775 5.22115 5.26843 5.31855 5.35118 5.40814 5.52930 5.57307 5.66512 5.68737 5.80973 5.89793 5.90583 5.95758 6.03368 6.12274 6.28196 6.36486 6.43463 6.60160 6.68096 7.08469 7.51473 7.52984 7.62401 8.29678 8.37857 8.55766 9.26087 10.88150 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.001966 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.490787 B =14238.804829 C =14519.172983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 N -0.618 5.618 4 C 0.109 3.891 5 C 0.104 3.896 6 N -0.723 5.723 7 C 0.591 3.409 8 O -0.549 6.549 9 C -0.236 4.236 10 C -0.168 4.168 11 C -0.018 4.018 12 N -0.554 5.554 13 H 0.416 0.584 14 C 0.106 3.894 15 C -0.097 4.097 16 C 0.534 3.466 17 O -0.512 6.512 18 C -0.150 4.150 19 S -0.063 6.063 20 C -0.533 4.533 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.145 0.855 39 H 0.169 0.831 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 -0.709 30.048 30.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.016 4.016 3 N -0.354 5.354 4 C -0.015 4.015 5 C -0.021 4.021 6 N -0.375 5.375 7 C 0.380 3.620 8 O -0.428 6.428 9 C -0.245 4.245 10 C -0.192 4.192 11 C -0.145 4.145 12 N -0.150 5.150 13 H 0.252 0.748 14 C -0.012 4.012 15 C -0.154 4.154 16 C 0.322 3.678 17 O -0.385 6.385 18 C -0.300 4.300 19 S 0.164 5.836 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.163 0.837 39 H 0.187 0.813 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.665 1.223 29.601 29.852 hybrid contribution -0.361 -1.867 -0.305 1.926 sum -4.026 -0.645 29.297 29.579 Atomic orbital electron populations 1.22322 0.95890 1.02297 1.03010 1.21587 0.94591 0.82141 1.03302 1.47892 1.68058 1.14302 1.05120 1.21455 0.97157 0.97186 0.85716 1.21832 0.98242 0.96673 0.85324 1.45595 1.14827 1.52940 1.24109 1.17308 0.83738 0.77727 0.83262 1.90752 1.24093 1.62464 1.65458 1.20130 0.95356 1.10251 0.98805 1.22042 0.97564 1.03980 0.95621 1.21725 0.86222 1.04311 1.02271 1.41612 1.11076 1.42525 1.19765 0.74793 1.20377 0.95667 0.97541 0.87582 1.20596 0.88400 1.01279 1.05115 1.20389 0.76276 0.86499 0.84601 1.90709 1.43708 1.17367 1.86745 1.23579 1.04873 1.04484 0.97104 1.85415 1.86848 1.17928 0.93389 1.22896 1.51660 1.01435 0.92181 0.90881 1.24997 0.94712 0.95552 0.98397 1.70033 1.43085 1.15607 1.21524 0.86117 0.78144 0.80086 0.81137 1.19609 1.20591 1.20598 0.92210 0.91784 0.91552 0.89745 0.90560 0.89227 0.90342 0.91234 0.90745 0.76716 0.83692 0.81350 0.90414 0.91834 0.87848 0.89238 0.89107 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 10.24 37.15 0.38 -1.46 16 2 C 0.11 1.13 5.98 -4.04 -0.02 1.11 16 3 N -0.62 -8.53 2.47 -173.69 -0.43 -8.95 16 4 C 0.11 1.26 5.56 -4.04 -0.02 1.23 16 5 C 0.10 1.32 6.00 -4.04 -0.02 1.30 16 6 N -0.72 -8.10 5.55 -61.43 -0.34 -8.45 16 7 C 0.59 7.88 7.81 -12.59 -0.10 7.78 16 8 O -0.55 -9.10 14.81 5.26 0.08 -9.03 16 9 C -0.24 -2.57 6.29 -103.35 -0.65 -3.22 16 10 C -0.17 -1.35 10.56 -37.49 -0.40 -1.75 16 11 C -0.02 -0.11 11.89 -16.82 -0.20 -0.31 16 12 N -0.55 -3.40 5.90 -9.10 -0.05 -3.45 16 13 H 0.42 1.17 8.96 -40.82 -0.37 0.80 16 14 C 0.11 0.98 7.17 -81.88 -0.59 0.40 16 15 C -0.10 -0.79 9.88 36.00 0.36 -0.44 16 16 C 0.53 10.14 7.69 -10.99 -0.08 10.06 16 17 O -0.51 -11.69 15.44 5.55 0.09 -11.60 16 18 C -0.15 -3.06 4.71 36.01 0.17 -2.89 16 19 S -0.06 -1.71 20.57 -107.50 -2.21 -3.93 16 20 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 24 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.06 0.62 6.26 -51.93 -0.33 0.30 16 29 H 0.06 0.80 7.22 -51.93 -0.38 0.42 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.91 6.44 -51.93 -0.33 0.57 16 32 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 33 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 34 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 35 H 0.07 0.88 6.26 -51.92 -0.33 0.56 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.40 3.30 7.60 -40.82 -0.31 2.99 16 38 H 0.15 0.86 7.69 -52.49 -0.40 0.45 16 39 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 1.13 6.47 -51.93 -0.34 0.79 16 43 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 44 H 0.09 1.74 7.19 -51.92 -0.37 1.37 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -38.42 389.06 -8.68 -47.10 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.40 Total: 2.72 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.98 Total: -1.19 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.09 Total: -46.47 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.16 Total: -20.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.42 -8.68 -47.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296284490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.800 kcal (2) G-P(sol) polarization free energy of solvation -38.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds