Wall clock time and date at job start Tue Mar 31 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.47216 * 2 1 4 4 C 1.46499 * 120.00012 * 90.00076 * 3 2 1 5 5 C 1.53004 * 109.47198 * 270.00064 * 4 3 2 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21623 * 120.00244 * 359.72094 * 7 6 5 9 9 C 1.47263 * 119.99630 * 179.72408 * 7 6 5 10 10 C 1.46690 * 126.94246 * 0.02562 * 9 7 6 11 11 C 1.34493 * 106.32930 * 179.97438 * 10 9 7 12 12 N 1.36448 * 108.85812 * 0.02562 * 11 10 9 13 13 H 0.96992 * 124.84803 * 180.02562 * 12 11 10 14 14 C 1.34664 * 110.29566 * 359.74434 * 12 11 10 15 15 C 1.50696 * 125.79840 * 180.29276 * 14 12 11 16 16 C 1.34773 * 119.99855 * 270.00208 * 3 2 1 17 17 O 1.21287 * 119.99643 * 179.97438 * 16 3 2 18 18 C 1.50700 * 120.00245 * 359.97438 * 16 3 2 19 19 S 1.81000 * 109.47134 * 179.97438 * 18 16 3 20 20 C 1.76200 * 99.99948 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99825 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99706 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00103 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47120 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47302 * 120.00082 * 24 22 20 27 27 H 1.48501 * 109.47431 * 239.99966 * 24 22 20 28 28 H 1.08999 * 109.47207 * 300.00256 * 1 2 3 29 29 H 1.09000 * 109.47106 * 59.99699 * 1 2 3 30 30 H 1.09002 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47343 * 240.00279 * 2 1 3 32 32 H 1.08993 * 109.47392 * 120.00042 * 2 1 3 33 33 H 1.08995 * 109.47424 * 150.00425 * 4 3 2 34 34 H 1.09006 * 109.46868 * 29.99976 * 4 3 2 35 35 H 1.09009 * 109.46730 * 59.99787 * 5 4 3 36 36 H 1.08998 * 109.46846 * 300.00332 * 5 4 3 37 37 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 38 38 H 1.07994 * 126.83701 * 359.96163 * 10 9 7 39 39 H 1.08002 * 125.56811 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.47617 * 270.13867 * 15 14 12 41 41 H 1.09003 * 109.47145 * 30.14297 * 15 14 12 42 42 H 1.09003 * 109.46917 * 150.13706 * 15 14 12 43 43 H 1.08996 * 109.47045 * 299.99944 * 18 16 3 44 44 H 1.08998 * 109.47351 * 60.00086 * 18 16 3 45 45 H 0.97004 * 119.99709 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9875 2.7931 1.7104 6 7 1.2315 3.4832 2.9795 7 6 0.2417 4.1852 3.5659 8 8 -0.8526 4.2500 3.0391 9 6 0.4852 4.8739 4.8446 10 6 1.7373 4.8980 5.6085 11 6 1.4989 5.6439 6.7019 12 7 0.2050 6.0757 6.6677 13 1 -0.2118 6.6319 7.3443 14 6 -0.4088 5.6245 5.5572 15 6 -1.8385 5.8981 5.1673 16 6 2.2429 2.0166 -1.1672 17 8 2.6468 3.1602 -1.1671 18 6 1.9922 1.3060 -2.4723 19 16 2.3834 2.4153 -3.8480 20 6 2.0115 1.3587 -5.2082 21 1 1.6571 0.3542 -5.0305 22 6 2.1731 1.8179 -6.5081 23 7 2.6046 3.0424 -6.7246 24 14 1.7782 0.6980 -7.9501 25 1 1.3139 -0.6179 -7.4422 26 1 0.7095 1.3139 -8.7770 27 1 2.9966 0.5080 -8.7775 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.0643 2.7985 1.1384 34 1 2.5506 1.3451 2.0284 35 1 0.1855 2.0664 1.8407 36 1 0.6994 3.5197 0.9508 37 1 2.1042 3.4312 3.3998 38 1 2.6657 4.4131 5.3454 39 1 2.2144 5.8643 7.4803 40 1 -2.4832 5.1237 5.5830 41 1 -2.1414 6.8704 5.5560 42 1 -1.9251 5.8984 4.0807 43 1 2.6227 0.4188 -2.5299 44 1 0.9444 1.0115 -2.5303 45 1 2.7171 3.3634 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296284490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:34 Heat of formation + Delta-G solvation = -60.450550 kcal Electronic energy + Delta-G solvation = -26159.003940 eV Core-core repulsion = 22302.225693 eV Total energy + Delta-G solvation = -3856.778247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.15006 -41.06998 -40.02189 -37.39410 -35.81553 -34.58589 -32.70997 -32.43413 -31.70092 -31.15111 -29.17059 -27.67423 -27.17883 -24.60035 -24.29994 -22.96026 -21.49441 -21.00721 -20.26043 -19.48982 -18.59524 -18.20441 -17.32554 -17.19839 -16.88413 -16.67832 -16.47679 -16.29017 -15.74959 -15.54932 -14.86128 -14.82640 -14.72728 -14.48199 -14.42252 -14.28092 -14.08673 -13.98550 -13.60979 -13.46709 -13.42691 -13.21373 -13.07559 -12.91354 -12.70633 -12.60776 -12.47818 -12.38132 -11.88862 -11.68154 -11.15726 -11.04026 -10.86023 -10.26258 -10.18796 -9.84072 -9.72542 -9.10339 -8.67345 -8.34669 -6.12935 0.73739 1.24148 1.41447 1.43655 1.53173 1.56645 1.57823 1.90547 2.26125 2.29028 2.56222 2.65546 2.99475 3.25572 3.65908 3.83498 3.92299 3.99789 4.07496 4.11960 4.20882 4.28648 4.32811 4.36319 4.42411 4.48462 4.60198 4.66805 4.70505 4.75496 4.78389 4.96070 4.98304 5.01587 5.07191 5.26527 5.37124 5.41972 5.42351 5.60675 5.81089 5.98920 6.19934 6.24039 6.59465 6.71823 7.06505 7.11978 7.34162 8.74897 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.001966 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.490787 B =14238.804829 C =14519.172983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.113 3.887 5 C 0.115 3.885 6 N -0.711 5.711 7 C 0.581 3.419 8 O -0.594 6.594 9 C -0.272 4.272 10 C -0.185 4.185 11 C -0.003 4.003 12 N -0.539 5.539 13 H 0.433 0.567 14 C 0.096 3.904 15 C -0.094 4.094 16 C 0.532 3.468 17 O -0.562 6.562 18 C -0.123 4.123 19 S -0.156 6.156 20 C -0.543 4.543 21 H 0.083 0.917 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.273 1.273 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.415 0.585 38 H 0.163 0.837 39 H 0.209 0.791 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 -2.997 32.729 33.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 N -0.337 5.337 4 C -0.010 4.010 5 C -0.010 4.010 6 N -0.363 5.363 7 C 0.372 3.628 8 O -0.477 6.477 9 C -0.282 4.282 10 C -0.208 4.208 11 C -0.130 4.130 12 N -0.136 5.136 13 H 0.273 0.727 14 C -0.024 4.024 15 C -0.151 4.151 16 C 0.320 3.680 17 O -0.439 6.439 18 C -0.274 4.274 19 S 0.072 5.928 20 C -0.691 4.691 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.198 1.198 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.252 0.748 38 H 0.180 0.820 39 H 0.225 0.775 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.259 -1.100 32.362 32.545 hybrid contribution -0.509 -1.151 -0.940 1.571 sum -3.769 -2.251 31.423 31.728 Atomic orbital electron populations 1.22292 0.95771 1.03543 1.01600 1.21957 0.94628 0.80093 1.05569 1.47877 1.66146 1.15414 1.04219 1.21623 0.95846 0.98061 0.85506 1.21584 0.99017 0.95564 0.84863 1.45448 1.15341 1.52266 1.23277 1.17851 0.83313 0.77555 0.84071 1.90720 1.25910 1.64154 1.66869 1.20189 0.97660 1.11777 0.98558 1.22327 0.97267 1.05232 0.96020 1.22354 0.86294 1.02241 1.02119 1.41627 1.11091 1.41809 1.19041 0.72718 1.20483 0.95884 0.97547 0.88508 1.20522 0.88513 1.02994 1.03062 1.20186 0.76310 0.85882 0.85632 1.90691 1.46400 1.19369 1.87483 1.23397 1.05880 1.03182 0.94952 1.85603 1.87591 1.22213 0.97439 1.23218 1.51658 1.01662 0.92559 0.89859 1.26157 0.94198 0.97208 1.01750 1.70199 1.44350 1.17876 1.22395 0.84889 0.78084 0.78182 0.76688 1.17883 1.20077 1.19801 0.92318 0.94528 0.88953 0.89537 0.86269 0.90548 0.85275 0.90968 0.95503 0.74834 0.81953 0.77479 0.89978 0.89124 0.91140 0.87048 0.87838 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 10.24 71.98 0.74 -2.54 16 2 C 0.10 1.79 5.98 86.38 0.52 2.31 16 3 N -0.60 -15.91 2.47 -821.81 -2.03 -17.95 16 4 C 0.11 2.45 5.56 86.38 0.48 2.93 16 5 C 0.12 2.99 6.00 86.38 0.52 3.51 16 6 N -0.71 -16.07 5.55 -466.51 -2.59 -18.66 16 7 C 0.58 16.17 7.81 86.62 0.68 16.84 16 8 O -0.59 -21.18 14.81 -4.10 -0.06 -21.24 16 9 C -0.27 -5.89 6.29 -19.04 -0.12 -6.01 16 10 C -0.19 -2.62 10.56 23.62 0.25 -2.37 16 11 C 0.00 -0.02 11.89 83.12 0.99 0.96 16 12 N -0.54 -5.28 5.90 -182.72 -1.08 -6.35 16 13 H 0.43 1.12 8.96 -92.71 -0.83 0.29 16 14 C 0.10 1.71 7.17 41.78 0.30 2.00 16 15 C -0.09 -1.56 9.88 71.23 0.70 -0.86 16 16 C 0.53 20.53 7.69 87.66 0.67 21.20 16 17 O -0.56 -26.93 15.44 -3.05 -0.05 -26.97 16 18 C -0.12 -5.07 4.71 71.24 0.34 -4.73 16 19 S -0.16 -8.88 20.57 -56.49 -1.16 -10.05 16 20 C -0.54 -31.53 9.50 67.96 0.65 -30.88 16 21 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 22 C 0.01 0.66 5.49 84.86 0.47 1.13 16 23 N -0.91 -56.95 13.22 21.65 0.29 -56.66 16 24 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H 0.06 1.13 6.26 -2.39 -0.01 1.11 16 29 H 0.04 0.89 7.22 -2.39 -0.02 0.87 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.59 6.44 -2.39 -0.02 1.57 16 32 H 0.12 1.25 7.89 -2.39 -0.02 1.24 16 33 H 0.08 1.94 7.42 -2.39 -0.02 1.92 16 34 H 0.13 1.58 7.89 -2.38 -0.02 1.56 16 35 H 0.07 1.83 6.26 -2.38 -0.01 1.82 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.41 6.47 7.60 -92.71 -0.70 5.76 16 38 H 0.16 1.54 7.69 -2.91 -0.02 1.51 16 39 H 0.21 0.20 8.06 -2.91 -0.02 0.17 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 1.68 6.47 -2.39 -0.02 1.67 16 43 H 0.11 4.07 7.40 -2.40 -0.02 4.05 16 44 H 0.10 3.98 7.19 -2.40 -0.02 3.96 16 45 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -90.86 389.06 2.01 -88.84 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.50 Total: 19.28 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 7.17 Total: 3.49 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -5.41 Total: -99.62 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.11 Total: -48.22 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.05 kcal Total: -90.86 2.01 -88.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296284490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.391 kcal (2) G-P(sol) polarization free energy of solvation -90.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds