Wall clock time and date at job start Tue Mar 31 2020 23:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46843 * 89.99951 * 7 6 5 9 9 C 1.46899 * 111.00298 * 293.95781 * 8 7 6 10 10 C 1.46902 * 110.99904 * 169.99854 * 8 7 6 11 11 C 1.53002 * 109.47091 * 189.99954 * 10 8 7 12 12 N 1.46504 * 109.46927 * 179.97438 * 11 10 8 13 13 C 1.34777 * 119.99778 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99815 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00001 * 180.02562 * 13 12 11 16 16 S 1.80996 * 109.47195 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99816 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00585 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99939 * 179.97438 * 17 16 15 20 20 N 1.31635 * 120.00018 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00149 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46932 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46639 * 119.99946 * 21 19 17 24 24 H 1.48497 * 109.47249 * 240.00068 * 21 19 17 25 25 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 26 26 N 1.31967 * 120.83264 * 0.02562 * 25 6 5 27 27 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 29 29 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 30 30 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 31 31 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 33 33 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 34 34 H 1.08998 * 109.47481 * 59.99640 * 9 8 7 35 35 H 1.08998 * 109.47370 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.46713 * 299.99525 * 9 8 7 37 37 H 1.08996 * 109.47310 * 309.99967 * 10 8 7 38 38 H 1.09001 * 109.46694 * 70.00143 * 10 8 7 39 39 H 1.09001 * 109.47483 * 300.00282 * 11 10 8 40 40 H 1.09001 * 109.47197 * 60.00497 * 11 10 8 41 41 H 0.97002 * 120.00055 * 0.02562 * 12 11 10 42 42 H 1.09001 * 109.46943 * 300.00222 * 15 13 12 43 43 H 1.09006 * 109.47327 * 59.99939 * 15 13 12 44 44 H 0.97001 * 119.99941 * 179.97438 * 20 19 17 45 45 H 1.07994 * 119.58392 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0799 5.4653 -1.3834 9 6 5.0742 4.6267 -2.0659 10 6 4.4654 6.8821 -1.4295 11 6 4.4250 7.3748 -2.8774 12 7 4.8088 8.7880 -2.9232 13 6 4.8441 9.4387 -4.1030 14 8 4.5575 8.8546 -5.1265 15 6 5.2395 10.8921 -4.1502 16 16 5.1915 11.4750 -5.8631 17 6 5.6819 13.1512 -5.6296 18 1 5.9028 13.5161 -4.6375 19 6 5.7842 14.0028 -6.7209 20 7 5.5144 13.5583 -7.9302 21 14 6.3034 15.7801 -6.4734 22 1 6.5470 16.0281 -5.0297 23 1 7.5494 16.0427 -7.2375 24 1 5.2271 16.6821 -6.9564 25 6 1.8772 3.5097 0.0021 26 7 1.3187 2.3141 0.0026 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0229 0.3694 -0.0035 31 1 5.1255 2.5946 0.0011 32 1 3.2187 5.7201 0.5158 33 1 4.8376 4.9803 0.5150 34 1 4.7302 3.5925 -2.0784 35 1 5.2055 4.9786 -3.0891 36 1 6.0251 4.6870 -1.5366 37 1 3.7708 7.4675 -0.8270 38 1 5.4749 6.9969 -1.0346 39 1 5.1195 6.7895 -3.4800 40 1 3.4155 7.2600 -3.2722 41 1 5.0377 9.2552 -2.1045 42 1 4.5452 11.4773 -3.5473 43 1 6.2492 11.0070 -3.7559 44 1 5.5856 14.1535 -8.6928 45 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317438484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:45 Heat of formation + Delta-G solvation = -29.681312 kcal Electronic energy + Delta-G solvation = -25175.221414 eV Core-core repulsion = 21319.777421 eV Total energy + Delta-G solvation = -3855.443993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09114 -39.33338 -38.73480 -37.56239 -34.60921 -32.97002 -32.42764 -31.92384 -30.10542 -28.27166 -28.09607 -27.03267 -25.50198 -24.63965 -23.71823 -22.16738 -21.34382 -20.34715 -18.80130 -17.84366 -17.54124 -16.61717 -16.38408 -16.34317 -16.05179 -15.80702 -15.11533 -15.04296 -14.91496 -14.80288 -14.56776 -14.13892 -13.93366 -13.78274 -13.56024 -13.46317 -13.09899 -12.68820 -12.55824 -12.28046 -12.24322 -12.06692 -11.88537 -11.64150 -11.55702 -11.26983 -11.07031 -11.01897 -10.75868 -10.29666 -10.03211 -9.80699 -9.42259 -9.07793 -8.92270 -8.87665 -8.69125 -8.22813 -6.49821 -6.21757 -3.92224 0.73285 0.81954 2.68968 2.92668 3.10746 3.21479 3.21678 3.29606 3.35307 3.59808 3.91781 3.97431 4.20280 4.28732 4.41941 4.53799 4.61479 4.69931 4.80184 4.88333 4.92628 4.96490 5.01043 5.13513 5.14563 5.17293 5.20177 5.23541 5.28442 5.36425 5.49260 5.57456 5.66990 5.76444 5.82122 5.89909 5.93344 5.99664 6.13684 6.50541 6.57027 6.68233 6.81433 7.45005 7.59819 7.69687 8.35378 8.61791 9.23689 10.85734 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036138 B = 0.001436 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.612849 B =19487.792467 C =19703.504022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.318 3.682 4 C -0.191 4.191 5 C -0.034 4.034 6 C -0.168 4.168 7 C 0.104 3.896 8 N -0.534 5.534 9 C 0.015 3.985 10 C 0.046 3.954 11 C 0.124 3.876 12 N -0.740 5.740 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.163 3.837 26 N -0.540 5.540 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.028 0.972 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.397 0.603 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 -24.382 22.262 33.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.139 3.861 4 C -0.212 4.212 5 C -0.060 4.060 6 C -0.170 4.170 7 C -0.024 4.024 8 N -0.258 5.258 9 C -0.133 4.133 10 C -0.082 4.082 11 C -0.001 4.001 12 N -0.395 5.395 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.007 3.993 26 N -0.263 5.263 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.230 0.770 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.142 -25.740 20.099 33.230 hybrid contribution 2.183 2.235 2.109 3.770 sum -3.959 -23.505 22.208 32.578 Atomic orbital electron populations 1.22870 0.77047 1.02979 1.02604 1.86233 1.23089 1.24644 1.87751 1.19887 0.89448 0.84776 0.91944 1.21034 0.92049 0.99482 1.08592 1.21335 1.00357 0.90909 0.93394 1.20531 0.94897 0.95652 1.05956 1.20881 0.99539 0.92614 0.89325 1.61860 1.46648 1.02224 1.15072 1.22574 0.92648 0.98304 0.99793 1.22269 0.99912 0.88798 0.97255 1.21196 1.01753 0.81626 0.95497 1.45917 1.72345 1.11493 1.09745 1.20290 0.76531 0.88570 0.82793 1.90711 1.46668 1.68412 1.33205 1.23527 1.04157 0.94244 1.08436 1.85419 1.89562 1.10450 0.97972 1.22912 1.53264 0.95804 0.96377 0.90874 1.24995 0.94884 0.99265 0.94438 1.70031 1.45737 1.36052 0.98449 0.86117 0.78314 0.82682 0.78377 1.19625 1.20578 1.20557 1.22302 0.92169 0.93501 0.91351 1.67369 1.40867 0.98809 1.19298 0.88623 0.92264 0.92142 0.84135 0.84378 0.89374 0.93522 0.91117 0.90470 0.95320 0.89867 0.93966 0.91622 0.90688 0.76955 0.89184 0.89251 0.92233 0.82198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.31 16 2 O -0.31 -2.79 10.48 -18.72 -0.20 -2.99 16 3 C 0.32 2.98 7.49 -17.12 -0.13 2.85 16 4 C -0.19 -1.43 10.04 -39.27 -0.39 -1.83 16 5 C -0.03 -0.22 8.14 -39.31 -0.32 -0.54 16 6 C -0.17 -1.17 4.89 -104.47 -0.51 -1.68 16 7 C 0.10 0.62 5.14 -4.98 -0.03 0.60 16 8 N -0.53 -4.14 4.75 -244.37 -1.16 -5.30 16 9 C 0.01 0.11 8.97 60.06 0.54 0.65 16 10 C 0.05 0.35 5.07 -3.82 -0.02 0.33 16 11 C 0.12 1.41 5.61 -4.04 -0.02 1.39 16 12 N -0.74 -9.52 5.56 -60.29 -0.33 -9.85 16 13 C 0.53 9.86 7.85 -10.99 -0.09 9.78 16 14 O -0.52 -11.81 15.86 5.56 0.09 -11.72 16 15 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 21 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.16 1.32 10.85 -17.56 -0.19 1.13 16 26 N -0.54 -5.22 9.22 -13.33 -0.12 -5.34 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 30 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.09 0.44 7.88 -51.93 -0.41 0.03 16 33 H 0.05 0.24 8.07 -51.93 -0.42 -0.18 16 34 H 0.07 0.53 6.17 -51.93 -0.32 0.21 16 35 H 0.08 0.67 6.30 -51.93 -0.33 0.34 16 36 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 38 H 0.04 0.30 8.12 -51.93 -0.42 -0.13 16 39 H 0.07 0.82 6.47 -51.93 -0.34 0.49 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.40 3.80 8.47 -40.82 -0.35 3.45 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -36.09 392.73 -8.76 -44.85 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.76 Total: -0.82 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 0.31 Total: -1.77 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.89 Total: -45.92 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.11 Total: -14.71 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.09 -8.76 -44.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317438484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.168 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds