Wall clock time and date at job start Tue Mar 31 2020 23:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46843 * 89.99951 * 7 6 5 9 9 C 1.46899 * 111.00298 * 293.95781 * 8 7 6 10 10 C 1.46902 * 110.99904 * 169.99854 * 8 7 6 11 11 C 1.53002 * 109.47091 * 189.99954 * 10 8 7 12 12 N 1.46504 * 109.46927 * 179.97438 * 11 10 8 13 13 C 1.34777 * 119.99778 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99815 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00001 * 180.02562 * 13 12 11 16 16 S 1.80996 * 109.47195 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99816 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00585 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99939 * 179.97438 * 17 16 15 20 20 N 1.31635 * 120.00018 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00149 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46932 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46639 * 119.99946 * 21 19 17 24 24 H 1.48497 * 109.47249 * 240.00068 * 21 19 17 25 25 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 26 26 N 1.31967 * 120.83264 * 0.02562 * 25 6 5 27 27 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 29 29 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 30 30 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 31 31 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 33 33 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 34 34 H 1.08998 * 109.47481 * 59.99640 * 9 8 7 35 35 H 1.08998 * 109.47370 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.46713 * 299.99525 * 9 8 7 37 37 H 1.08996 * 109.47310 * 309.99967 * 10 8 7 38 38 H 1.09001 * 109.46694 * 70.00143 * 10 8 7 39 39 H 1.09001 * 109.47483 * 300.00282 * 11 10 8 40 40 H 1.09001 * 109.47197 * 60.00497 * 11 10 8 41 41 H 0.97002 * 120.00055 * 0.02562 * 12 11 10 42 42 H 1.09001 * 109.46943 * 300.00222 * 15 13 12 43 43 H 1.09006 * 109.47327 * 59.99939 * 15 13 12 44 44 H 0.97001 * 119.99941 * 179.97438 * 20 19 17 45 45 H 1.07994 * 119.58392 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0799 5.4653 -1.3834 9 6 5.0742 4.6267 -2.0659 10 6 4.4654 6.8821 -1.4295 11 6 4.4250 7.3748 -2.8774 12 7 4.8088 8.7880 -2.9232 13 6 4.8441 9.4387 -4.1030 14 8 4.5575 8.8546 -5.1265 15 6 5.2395 10.8921 -4.1502 16 16 5.1915 11.4750 -5.8631 17 6 5.6819 13.1512 -5.6296 18 1 5.9028 13.5161 -4.6375 19 6 5.7842 14.0028 -6.7209 20 7 5.5144 13.5583 -7.9302 21 14 6.3034 15.7801 -6.4734 22 1 6.5470 16.0281 -5.0297 23 1 7.5494 16.0427 -7.2375 24 1 5.2271 16.6821 -6.9564 25 6 1.8772 3.5097 0.0021 26 7 1.3187 2.3141 0.0026 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0229 0.3694 -0.0035 31 1 5.1255 2.5946 0.0011 32 1 3.2187 5.7201 0.5158 33 1 4.8376 4.9803 0.5150 34 1 4.7302 3.5925 -2.0784 35 1 5.2055 4.9786 -3.0891 36 1 6.0251 4.6870 -1.5366 37 1 3.7708 7.4675 -0.8270 38 1 5.4749 6.9969 -1.0346 39 1 5.1195 6.7895 -3.4800 40 1 3.4155 7.2600 -3.2722 41 1 5.0377 9.2552 -2.1045 42 1 4.5452 11.4773 -3.5473 43 1 6.2492 11.0070 -3.7559 44 1 5.5856 14.1535 -8.6928 45 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317438484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:44 Heat of formation + Delta-G solvation = -58.349230 kcal Electronic energy + Delta-G solvation = -25176.464548 eV Core-core repulsion = 21319.777421 eV Total energy + Delta-G solvation = -3856.687127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65762 -40.63683 -39.41399 -38.24796 -35.75870 -34.57234 -33.60574 -32.58533 -31.37230 -29.15221 -28.77058 -27.71047 -27.55367 -25.37382 -24.29022 -22.84224 -22.06804 -21.63959 -19.81546 -19.37334 -18.11417 -17.84078 -17.45665 -17.03372 -16.92213 -16.87022 -16.48881 -16.28102 -16.07867 -15.51098 -15.41083 -15.22224 -14.81200 -14.75371 -14.56508 -14.36088 -14.14879 -13.98643 -13.54804 -13.19806 -13.14733 -12.91420 -12.85695 -12.76700 -12.59006 -12.51845 -12.27684 -12.18935 -12.02218 -11.69598 -11.14854 -10.98532 -10.84898 -10.61661 -10.25379 -10.09753 -9.48514 -9.24295 -8.65650 -8.33707 -6.11761 0.15631 0.27996 1.28136 1.42519 1.48332 1.59206 1.62922 2.15522 2.19978 2.28754 2.71601 3.00726 3.21116 3.36473 3.37865 3.78077 3.85652 3.96961 4.04528 4.06131 4.11090 4.20031 4.33174 4.41038 4.42699 4.43626 4.48437 4.53258 4.55755 4.63801 4.73108 4.78487 4.85965 4.91806 4.96960 4.99433 5.10623 5.29162 5.42435 5.43569 5.49160 6.02301 6.03763 6.21239 6.23531 6.53070 6.86356 7.07839 7.27067 8.75810 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036138 B = 0.001436 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.612849 B =19487.792467 C =19703.504022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.324 6.324 3 C 0.294 3.706 4 C -0.197 4.197 5 C -0.031 4.031 6 C -0.165 4.165 7 C 0.108 3.892 8 N -0.549 5.549 9 C 0.016 3.984 10 C 0.058 3.942 11 C 0.125 3.875 12 N -0.710 5.710 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.128 4.128 16 S -0.156 6.156 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.255 1.255 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.147 3.853 26 N -0.562 5.562 27 H 0.120 0.880 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.418 0.582 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.271 0.729 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 -23.596 25.202 34.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.116 3.884 4 C -0.217 4.217 5 C -0.056 4.056 6 C -0.168 4.168 7 C -0.019 4.019 8 N -0.273 5.273 9 C -0.132 4.132 10 C -0.070 4.070 11 C 0.001 3.999 12 N -0.365 5.365 13 C 0.319 3.681 14 O -0.447 6.447 15 C -0.279 4.279 16 S 0.071 5.929 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.008 4.008 26 N -0.286 5.286 27 H 0.138 0.862 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.172 0.828 31 H 0.181 0.819 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.255 0.745 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.961 -24.967 23.116 34.385 hybrid contribution 1.785 1.871 1.276 2.883 sum -3.177 -23.097 24.392 33.742 Atomic orbital electron populations 1.22997 0.76112 1.04447 1.02041 1.86209 1.24159 1.24863 1.87955 1.20224 0.90339 0.84833 0.93048 1.21303 0.91537 1.00664 1.08194 1.21644 1.01547 0.90259 0.92194 1.20687 0.94492 0.96519 1.05122 1.20920 1.00565 0.92081 0.88328 1.61785 1.46970 1.02182 1.16394 1.22528 0.93408 0.98151 0.99081 1.22145 1.01519 0.88976 0.94348 1.21264 1.00165 0.80231 0.98271 1.45598 1.70086 1.12049 1.08767 1.20082 0.76352 0.88072 0.83624 1.90701 1.49376 1.69195 1.35392 1.23364 1.06188 0.95332 1.03052 1.85629 1.89997 1.11747 1.05490 1.23247 1.53128 0.95846 0.97047 0.89769 1.26135 0.94602 1.04497 0.93932 1.70198 1.47066 1.38026 0.99591 0.84898 0.77878 0.75999 0.79118 1.17892 1.20002 1.20014 1.22599 0.93144 0.93395 0.91700 1.67331 1.41733 0.99448 1.20086 0.86164 0.92516 0.92972 0.82762 0.81928 0.88025 0.91836 0.91197 0.92248 0.93816 0.88056 0.92215 0.92810 0.92670 0.74451 0.86997 0.87004 0.92030 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 113.37 1.18 1.68 16 2 O -0.32 -5.92 10.48 -89.90 -0.94 -6.86 16 3 C 0.29 5.50 7.49 84.79 0.63 6.14 16 4 C -0.20 -2.76 10.04 22.47 0.23 -2.53 16 5 C -0.03 -0.33 8.14 22.45 0.18 -0.15 16 6 C -0.17 -1.99 4.89 -19.77 -0.10 -2.09 16 7 C 0.11 0.95 5.14 85.56 0.44 1.39 16 8 N -0.55 -7.10 4.75 -927.06 -4.41 -11.51 16 9 C 0.02 0.22 8.97 127.69 1.15 1.36 16 10 C 0.06 0.71 5.07 86.30 0.44 1.14 16 11 C 0.12 2.66 5.61 86.38 0.48 3.15 16 12 N -0.71 -16.66 5.56 -463.05 -2.57 -19.23 16 13 C 0.53 19.31 7.85 87.66 0.69 20.00 16 14 O -0.57 -26.58 15.86 -3.03 -0.05 -26.63 16 15 C -0.13 -4.94 6.16 71.23 0.44 -4.51 16 16 S -0.16 -8.63 20.57 -56.49 -1.16 -9.79 16 17 C -0.54 -30.91 9.50 67.96 0.65 -30.26 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.73 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 21 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 C 0.15 2.26 10.85 84.63 0.92 3.18 16 26 N -0.56 -10.90 9.22 -308.95 -2.85 -13.75 16 27 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 29 H 0.05 0.74 8.11 -2.38 -0.02 0.72 16 30 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 32 H 0.10 0.64 7.88 -2.39 -0.02 0.62 16 33 H 0.06 0.38 8.07 -2.39 -0.02 0.36 16 34 H 0.07 0.92 6.17 -2.39 -0.01 0.91 16 35 H 0.06 1.00 6.30 -2.39 -0.02 0.98 16 36 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.10 0.92 7.93 -2.39 -0.02 0.90 16 38 H 0.06 0.57 8.12 -2.39 -0.02 0.55 16 39 H 0.05 1.31 6.47 -2.39 -0.02 1.30 16 40 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.42 6.41 8.47 -92.71 -0.79 5.62 16 42 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 43 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 45 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -81.68 392.73 -1.66 -83.34 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.21 Total: 15.17 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 7.79 Total: -0.30 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -9.54 Total: -100.26 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.99 Total: -33.48 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -81.68 -1.66 -83.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317438484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.991 kcal (2) G-P(sol) polarization free energy of solvation -81.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds