Wall clock time and date at job start Tue Mar 31 2020 22:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47165 * 2 1 4 4 C 1.36939 * 119.99755 * 275.31398 * 3 2 1 5 5 H 1.07994 * 120.00512 * 37.57249 * 4 3 2 6 6 C 1.38817 * 119.99448 * 217.58020 * 4 3 2 7 7 N 1.31619 * 120.00626 * 21.42223 * 6 4 3 8 8 Si 1.86804 * 119.99566 * 201.42424 * 6 4 3 9 9 H 1.48501 * 109.47065 * 90.00115 * 8 6 4 10 10 H 1.48505 * 109.46983 * 209.99713 * 8 6 4 11 11 H 1.48500 * 109.47449 * 329.99821 * 8 6 4 12 12 C 1.46500 * 120.00225 * 95.30791 * 3 2 1 13 13 C 1.52997 * 109.47532 * 270.00284 * 12 3 2 14 14 N 1.46497 * 109.47064 * 179.97438 * 13 12 3 15 15 C 1.34784 * 119.99669 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99892 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99908 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47303 * 180.02562 * 17 15 14 19 19 N 1.46499 * 109.47158 * 180.02562 * 18 17 15 20 20 C 1.34781 * 119.99753 * 180.02562 * 19 18 17 21 21 O 1.21699 * 119.99965 * 359.97438 * 20 19 18 22 22 C 1.46580 * 119.99736 * 179.97438 * 20 19 18 23 23 C 1.36647 * 125.45767 * 179.97438 * 22 20 19 24 24 C 1.37479 * 113.29969 * 179.97438 * 23 22 20 25 25 C 1.33815 * 115.09930 * 0.02562 * 24 23 22 26 26 S 1.70623 * 110.95641 * 359.97438 * 25 24 23 27 27 H 1.08993 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46766 * 300.00110 * 1 2 3 29 29 H 1.08997 * 109.46936 * 59.99639 * 1 2 3 30 30 H 1.09001 * 109.46766 * 239.99890 * 2 1 3 31 31 H 1.08997 * 109.47154 * 119.99607 * 2 1 3 32 32 H 0.96998 * 120.00274 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47163 * 149.99629 * 12 3 2 34 34 H 1.08998 * 109.46582 * 30.00366 * 12 3 2 35 35 H 1.09001 * 109.46731 * 59.99768 * 13 12 3 36 36 H 1.09004 * 109.47059 * 300.00105 * 13 12 3 37 37 H 0.96996 * 120.00315 * 0.02562 * 14 13 12 38 38 H 1.09000 * 109.47110 * 59.99793 * 17 15 14 39 39 H 1.09004 * 109.47316 * 300.00428 * 17 15 14 40 40 H 1.08994 * 109.47021 * 59.99743 * 18 17 15 41 41 H 1.09004 * 109.47059 * 300.00310 * 18 17 15 42 42 H 0.96996 * 120.00221 * 359.97438 * 19 18 17 43 43 H 1.07999 * 123.34917 * 0.27360 * 23 22 20 44 44 H 1.07998 * 122.45104 * 180.02562 * 24 23 22 45 45 H 1.07995 * 124.52285 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4106 1.9278 -1.9627 6 6 3.2112 2.9289 -1.3729 7 7 4.3027 2.7981 -0.6491 8 14 3.0993 4.2795 -2.6586 9 1 2.5376 5.5069 -2.0395 10 1 4.4550 4.5696 -3.1910 11 1 2.2166 3.8357 -3.7672 12 6 2.3732 2.0327 1.2633 13 6 1.1427 2.7383 1.8366 14 7 1.4975 3.3893 3.1001 15 6 0.5650 4.0767 3.7891 16 8 -0.5678 4.1559 3.3631 17 6 0.9301 4.7468 5.0885 18 6 -0.3005 5.4523 5.6619 19 7 0.0545 6.1042 6.9248 20 6 -0.8781 6.7909 7.6142 21 8 -2.0151 6.8697 7.1873 22 6 -0.5230 7.4427 8.8782 23 6 -1.3758 8.1647 9.6648 24 6 -0.7786 8.6658 10.7971 25 6 0.5184 8.3663 10.9347 26 16 1.0686 7.4207 9.6254 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.0489 3.4031 -0.7831 33 1 3.1618 2.7641 1.0859 34 1 2.7255 1.2834 1.9720 35 1 0.3542 2.0068 2.0139 36 1 0.7903 3.4877 1.1277 37 1 2.4035 3.3262 3.4405 38 1 1.7188 5.4780 4.9112 39 1 1.2821 3.9974 5.7975 40 1 -1.0889 4.7208 5.8392 41 1 -0.6530 6.2016 4.9530 42 1 0.9606 6.0411 7.2653 43 1 -2.4168 8.3217 9.4235 44 1 -1.3167 9.2578 11.5225 45 1 1.1344 8.6804 11.7643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317490001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:21 Heat of formation + Delta-G solvation = -50.833790 kcal Electronic energy + Delta-G solvation = -25760.480083 eV Core-core repulsion = 21904.118850 eV Total energy + Delta-G solvation = -3856.361233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10031 -40.54533 -38.47617 -38.11152 -36.37866 -35.60458 -33.83402 -32.66767 -31.31849 -30.50527 -29.18985 -26.61113 -25.97125 -24.65842 -23.22049 -22.42242 -22.14283 -21.43408 -20.30579 -19.65572 -18.71215 -17.99846 -17.24588 -17.10870 -16.90823 -16.87675 -16.56013 -16.27465 -15.84955 -15.77220 -15.42571 -14.98735 -14.76379 -14.49379 -14.21076 -14.09587 -13.83374 -13.70335 -13.68600 -13.25140 -13.21351 -13.02545 -12.99009 -12.65105 -12.52402 -12.36640 -12.29556 -12.02855 -11.97276 -11.66734 -11.50808 -11.38804 -10.94701 -10.55040 -10.40945 -10.01005 -9.84864 -9.51207 -8.59740 -7.86254 -5.48889 -0.51758 0.48190 0.91805 1.39199 1.43330 1.47655 1.54172 1.64283 1.77579 2.10671 2.39481 2.53084 3.21136 3.53557 3.74653 3.80686 4.00167 4.02828 4.14935 4.32925 4.34835 4.43457 4.47818 4.51010 4.54360 4.76902 4.79099 4.82848 4.84820 4.85402 5.03023 5.08630 5.18309 5.22662 5.24687 5.28888 5.35129 5.45003 5.56238 5.66926 5.75992 6.31868 6.45139 6.62720 7.00809 7.14954 7.30145 7.83048 8.34769 9.09385 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.001824 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.332535 B =15347.472175 C =15882.312194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.598 5.598 4 C -0.270 4.270 5 H 0.050 0.950 6 C -0.027 4.027 7 N -0.909 5.909 8 Si 0.950 3.050 9 H -0.289 1.289 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.145 3.855 13 C 0.118 3.882 14 N -0.710 5.710 15 C 0.507 3.493 16 O -0.595 6.595 17 C -0.136 4.136 18 C 0.141 3.859 19 N -0.710 5.710 20 C 0.585 3.415 21 O -0.579 6.579 22 C -0.306 4.306 23 C -0.062 4.062 24 C -0.162 4.162 25 C -0.218 4.218 26 S 0.251 5.749 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.255 0.745 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.026 0.974 37 H 0.416 0.584 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.415 0.585 43 H 0.143 0.857 44 H 0.167 0.833 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.247 8.493 27.290 28.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.401 4.401 5 H 0.067 0.933 6 C -0.226 4.226 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.216 1.216 10 H -0.214 1.214 11 H -0.199 1.199 12 C 0.018 3.982 13 C -0.009 4.009 14 N -0.362 5.362 15 C 0.294 3.706 16 O -0.476 6.476 17 C -0.176 4.176 18 C 0.017 3.983 19 N -0.363 5.363 20 C 0.373 3.627 21 O -0.460 6.460 22 C -0.426 4.426 23 C -0.097 4.097 24 C -0.192 4.192 25 C -0.356 4.356 26 S 0.518 5.482 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.252 0.748 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.252 0.748 43 H 0.160 0.840 44 H 0.184 0.816 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.222 7.967 26.239 27.423 hybrid contribution -1.010 1.368 -0.448 1.758 sum -1.232 9.335 25.792 27.457 Atomic orbital electron populations 1.22223 0.98137 1.00817 1.00308 1.21013 0.93046 0.85491 0.99343 1.43859 1.76364 1.09629 1.02069 1.19152 1.04339 1.21779 0.94793 0.93267 1.25730 0.94036 1.02770 1.00035 1.70071 1.03473 1.37837 1.43805 0.85558 0.76777 0.80144 0.79701 1.21639 1.21394 1.19893 1.20943 0.94342 0.96819 0.86124 1.21914 0.99919 0.95310 0.83762 1.45930 1.14225 1.52862 1.23195 1.21091 0.84538 0.78268 0.86699 1.90722 1.22762 1.62623 1.71487 1.21758 0.99292 1.02565 0.93953 1.20854 0.97026 0.96317 0.84136 1.45631 1.13745 1.53421 1.23473 1.17377 0.84456 0.77777 0.83121 1.90834 1.22013 1.62754 1.70402 1.24540 1.01741 1.13974 1.02342 1.21022 1.00950 0.94438 0.93294 1.20230 0.94999 1.04753 0.99214 1.25823 1.00367 1.04269 1.05119 1.82749 1.06170 1.46708 1.12558 0.91260 0.94077 0.94840 0.94514 0.92799 0.93620 0.90724 0.93415 0.93541 0.95572 0.74753 0.84901 0.84193 0.92304 0.92833 0.74752 0.83965 0.81556 0.78186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.59 10.21 71.98 0.73 -4.86 16 2 C 0.14 5.54 6.44 86.38 0.56 6.09 16 3 N -0.60 -28.66 2.43 -702.00 -1.71 -30.36 16 4 C -0.27 -14.56 9.45 84.03 0.79 -13.76 16 5 H 0.05 2.72 7.92 -2.91 -0.02 2.70 16 6 C -0.03 -1.48 4.95 84.86 0.42 -1.06 16 7 N -0.91 -49.95 11.47 21.65 0.25 -49.70 16 8 Si 0.95 44.08 29.60 68.60 2.03 46.11 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.14 6.21 5.45 86.38 0.47 6.68 16 13 C 0.12 4.67 6.00 86.38 0.52 5.18 16 14 N -0.71 -21.17 5.56 -463.06 -2.57 -23.74 16 15 C 0.51 15.07 7.83 87.65 0.69 15.76 16 16 O -0.59 -24.20 15.98 -3.04 -0.05 -24.25 16 17 C -0.14 -2.34 5.81 29.85 0.17 -2.17 16 18 C 0.14 3.29 4.96 86.38 0.43 3.71 16 19 N -0.71 -13.12 5.55 -467.18 -2.59 -15.72 16 20 C 0.58 14.29 7.78 86.42 0.67 14.96 16 21 O -0.58 -19.85 16.84 -4.35 -0.07 -19.92 16 22 C -0.31 -5.50 6.45 24.08 0.16 -5.35 16 23 C -0.06 -1.05 10.01 21.72 0.22 -0.83 16 24 C -0.16 -1.69 10.15 21.08 0.21 -1.48 16 25 C -0.22 -1.62 10.92 66.81 0.73 -0.89 16 26 S 0.25 2.27 22.16 -56.49 -1.25 1.01 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.04 1.49 6.64 -2.39 -0.02 1.48 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 31 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 32 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 33 H 0.07 3.62 5.52 -2.39 -0.01 3.60 16 34 H 0.05 1.84 7.86 -2.39 -0.02 1.82 16 35 H 0.05 1.90 6.64 -2.39 -0.02 1.88 16 36 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.42 9.42 8.47 -92.71 -0.79 8.63 16 38 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.64 8.10 -2.39 -0.02 1.63 16 41 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 42 H 0.41 4.41 7.59 -92.71 -0.70 3.70 16 43 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 45 H 0.20 0.22 8.06 -2.91 -0.02 0.19 16 Total: -1.00 -77.74 393.28 0.33 -77.40 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.47 Total: 17.16 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 6.77 Total: 22.00 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -6.63 Total: -119.52 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -0.12 Total: -44.17 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.25 Total: 1.01 kcal Total: -77.74 0.33 -77.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317490001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.569 kcal (2) G-P(sol) polarization free energy of solvation -77.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds