Wall clock time and date at job start Tue Mar 31 2020 23:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 119.99930 * 2 1 4 4 H 1.07999 * 120.00059 * 205.56696 * 3 2 1 5 5 C 1.38818 * 120.00214 * 25.56843 * 3 2 1 6 6 N 1.31614 * 119.99886 * 9.23306 * 5 3 2 7 7 Si 1.86797 * 119.99892 * 189.23631 * 5 3 2 8 8 H 1.48501 * 109.47195 * 94.93309 * 7 5 3 9 9 H 1.48497 * 109.46867 * 214.93081 * 7 5 3 10 10 H 1.48504 * 109.47405 * 334.92791 * 7 5 3 11 11 C 1.46503 * 119.99912 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.46764 * 269.99920 * 11 2 1 13 13 C 1.52998 * 109.47111 * 180.02562 * 12 11 2 14 14 C 1.53038 * 109.46155 * 174.99772 * 13 12 11 15 15 C 1.53195 * 109.31003 * 181.37164 * 14 13 12 16 16 N 1.46920 * 108.77631 * 305.36215 * 15 14 13 17 17 C 1.34774 * 120.63361 * 233.58950 * 16 15 14 18 18 O 1.21639 * 120.00237 * 8.04667 * 17 16 15 19 19 C 1.47184 * 120.00245 * 188.05570 * 17 16 15 20 20 C 1.35089 * 122.48697 * 188.27766 * 19 17 16 21 21 S 1.76196 * 108.21881 * 179.97438 * 20 19 17 22 22 C 1.76058 * 90.15730 * 359.97438 * 21 20 19 23 23 O 1.35492 * 125.17777 * 179.97438 * 22 21 20 24 24 N 1.29250 * 109.63914 * 0.02562 * 22 21 20 25 25 C 1.46931 * 118.73931 * 53.86709 * 16 15 14 26 26 C 1.53045 * 109.44771 * 295.06278 * 13 12 11 27 27 H 1.09000 * 109.47354 * 271.36999 * 1 2 3 28 28 H 1.09000 * 109.47299 * 31.36612 * 1 2 3 29 29 H 1.08997 * 109.47454 * 151.36889 * 1 2 3 30 30 H 0.96998 * 120.00361 * 180.02562 * 6 5 3 31 31 H 1.08999 * 109.47181 * 149.99706 * 11 2 1 32 32 H 1.08999 * 109.46828 * 29.99853 * 11 2 1 33 33 H 1.08999 * 109.47446 * 59.99948 * 12 11 2 34 34 H 1.09006 * 109.46770 * 299.99720 * 12 11 2 35 35 H 1.08998 * 109.45971 * 55.02379 * 13 12 11 36 36 H 1.09000 * 109.49649 * 61.42350 * 14 13 12 37 37 H 1.08994 * 109.52295 * 301.34007 * 14 13 12 38 38 H 1.09004 * 109.58308 * 185.58170 * 15 14 13 39 39 H 1.09000 * 109.70476 * 65.22624 * 15 14 13 40 40 H 1.08000 * 125.89428 * 359.97438 * 20 19 17 41 41 H 0.96702 * 114.00121 * 269.99856 * 23 22 21 42 42 H 1.08993 * 109.59102 * 65.92026 * 25 16 15 43 43 H 1.09003 * 109.58760 * 186.35521 * 25 16 15 44 44 H 1.09005 * 109.49217 * 298.56806 * 26 13 12 45 45 H 1.08994 * 109.49707 * 58.66772 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1503 1.2317 -0.4036 5 6 1.5575 2.3292 0.5188 6 7 0.4186 2.2417 1.1726 7 14 2.3772 3.9919 0.2891 8 1 1.8057 4.6649 -0.9049 9 1 2.1400 4.8310 1.4911 10 1 3.8377 3.8018 0.0986 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7110 1.4418 13 6 3.2180 -3.0357 1.4413 14 6 3.5818 -3.4149 2.8786 15 6 4.3777 -4.7238 2.8712 16 7 3.6011 -5.7454 2.1558 17 6 3.3327 -6.9333 2.7332 18 8 3.6047 -7.1155 3.9047 19 6 2.7105 -8.0103 1.9462 20 6 2.2711 -9.1580 2.5072 21 16 1.5992 -10.1721 1.2326 22 6 1.9786 -8.9335 0.0403 23 8 1.7244 -9.0241 -1.2874 24 7 2.5377 -7.9251 0.6244 25 6 3.1278 -5.4499 0.7966 26 6 2.3412 -4.1307 0.8293 27 1 -0.3634 0.0246 1.0274 28 1 -0.3634 0.8775 -0.5349 29 1 -0.3634 -0.9020 -0.4924 30 1 0.0046 3.0406 1.5348 31 1 3.1499 -1.1382 -0.5144 32 1 1.6083 -2.0281 -0.5147 33 1 1.5000 -1.8415 1.9556 34 1 3.0416 -0.9515 1.9559 35 1 4.1289 -2.9285 0.8523 36 1 2.6705 -3.5465 3.4619 37 1 4.1865 -2.6239 3.3220 38 1 4.5539 -5.0501 3.8962 39 1 5.3320 -4.5709 2.3673 40 1 2.3227 -9.4104 3.5560 41 1 2.4446 -9.4160 -1.8000 42 1 3.9811 -5.3531 0.1255 43 1 2.4789 -6.2553 0.4524 44 1 1.4415 -4.2555 1.4320 45 1 2.0632 -3.8490 -0.1862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319886375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:20 Heat of formation + Delta-G solvation = 8.165044 kcal Electronic energy + Delta-G solvation = -27224.837403 eV Core-core repulsion = 23371.034551 eV Total energy + Delta-G solvation = -3853.802852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.08163 -39.47140 -38.03131 -37.41547 -35.71504 -33.76723 -31.42193 -30.92166 -30.48100 -28.69998 -26.35048 -25.77552 -24.84885 -23.15049 -23.03734 -21.73966 -20.43492 -20.04927 -19.72025 -18.93427 -18.36486 -16.64118 -16.60765 -16.38445 -15.95216 -15.49154 -14.83771 -14.79446 -14.43258 -14.12305 -14.00900 -13.78186 -13.73551 -13.34832 -13.00857 -12.80284 -12.59759 -12.50128 -12.15631 -12.03515 -11.79468 -11.22408 -11.11777 -10.89002 -10.81427 -10.66150 -10.54121 -10.43094 -10.32351 -10.14842 -10.13042 -9.97067 -9.72514 -9.60566 -9.40624 -9.26881 -8.64833 -8.47152 -6.62560 -5.66488 -3.13447 -0.09097 0.43709 0.94984 1.43068 2.75526 2.93406 3.14665 3.41061 3.47270 3.48940 4.14966 4.55142 4.59051 4.69500 4.95291 5.01777 5.10490 5.13068 5.25575 5.38689 5.51034 5.60423 5.64201 5.76745 5.91032 5.95739 6.02284 6.10681 6.22788 6.28744 6.41572 6.44598 6.50276 6.60709 6.67561 6.69185 6.81681 6.85839 7.05067 7.22789 7.28923 7.44713 7.79928 7.86647 7.92717 8.49886 9.32002 9.95537 10.46358 11.39341 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.002286 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.735080 B =12247.755362 C =13044.805341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.605 5.605 3 C -0.250 4.250 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.909 5.909 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.153 3.847 12 C -0.130 4.130 13 C -0.087 4.087 14 C -0.127 4.127 15 C 0.111 3.889 16 N -0.587 5.587 17 C 0.590 3.410 18 O -0.539 6.539 19 C 0.029 3.971 20 C -0.165 4.165 21 S 0.104 5.896 22 C 0.256 3.744 23 O -0.429 6.429 24 N -0.451 5.451 25 C 0.078 3.922 26 C -0.128 4.128 27 H 0.023 0.977 28 H 0.045 0.955 29 H -0.006 1.006 30 H 0.251 0.749 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.196 0.804 41 H 0.410 0.590 42 H 0.064 0.936 43 H 0.136 0.864 44 H 0.061 0.939 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 -28.136 -1.449 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.328 5.328 3 C -0.380 4.380 4 H 0.084 0.916 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.026 3.974 12 C -0.170 4.170 13 C -0.106 4.106 14 C -0.165 4.165 15 C -0.011 4.011 16 N -0.318 5.318 17 C 0.374 3.626 18 O -0.418 6.418 19 C -0.102 4.102 20 C -0.306 4.306 21 S 0.353 5.647 22 C -0.063 4.063 23 O -0.236 6.236 24 N -0.178 5.178 25 C -0.045 4.045 26 C -0.167 4.167 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.012 0.988 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.213 0.787 41 H 0.270 0.730 42 H 0.083 0.917 43 H 0.153 0.847 44 H 0.080 0.920 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.220 -28.394 -1.093 28.727 hybrid contribution 1.072 1.555 0.191 1.899 sum 5.292 -26.839 -0.902 27.371 Atomic orbital electron populations 1.20746 0.82847 0.95799 0.98587 1.43955 1.01804 1.00861 1.86137 1.19211 0.99687 0.86181 1.32954 0.91621 1.25101 0.97865 0.98673 0.98137 1.70049 1.18848 1.27453 1.39111 0.86250 0.78942 0.84332 0.77107 1.21604 1.21787 1.20475 1.20868 0.95355 0.87850 0.93296 1.22248 0.99338 0.94066 1.01365 1.21198 0.98759 0.95695 0.94942 1.21970 1.00569 0.95866 0.98132 1.21744 0.93744 0.87575 0.98080 1.47959 1.52701 1.13718 1.17381 1.17087 0.78473 0.81420 0.85580 1.90814 1.54370 1.81488 1.15080 1.20035 1.05424 0.96835 0.87948 1.27129 1.01891 0.96493 1.05115 1.85412 1.58265 1.20598 1.00443 1.25378 0.99964 0.90929 0.90046 1.84881 1.44063 1.83115 1.11528 1.66876 1.17097 1.24389 1.09455 1.22967 1.00058 1.00125 0.81350 1.22114 0.98550 0.93902 1.02094 0.95876 0.93622 0.98782 0.93861 0.94269 0.94639 0.92966 0.91985 0.91481 0.91657 0.90569 0.89222 0.91286 0.78702 0.73019 0.91741 0.84726 0.92015 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.22 9.01 59.85 0.54 4.76 16 2 N -0.60 -15.66 2.92 -181.12 -0.53 -16.19 16 3 C -0.25 -7.03 9.64 -15.06 -0.15 -7.18 16 4 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 5 C 0.00 0.01 5.14 -17.43 -0.09 -0.08 16 6 N -0.91 -27.12 10.69 55.49 0.59 -26.53 16 7 Si 0.90 22.24 29.56 -169.99 -5.03 17.22 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.15 3.18 5.47 -4.04 -0.02 3.16 16 12 C -0.13 -2.45 5.01 -26.73 -0.13 -2.58 16 13 C -0.09 -1.26 2.15 -90.58 -0.19 -1.45 16 14 C -0.13 -1.71 5.36 -26.61 -0.14 -1.85 16 15 C 0.11 1.36 6.44 -3.71 -0.02 1.34 16 16 N -0.59 -7.52 2.97 -173.86 -0.52 -8.03 16 17 C 0.59 7.88 7.64 -12.63 -0.10 7.79 16 18 O -0.54 -8.40 16.12 5.24 0.08 -8.31 16 19 C 0.03 0.31 6.45 -84.60 -0.55 -0.23 16 20 C -0.17 -1.39 10.84 29.61 0.32 -1.07 16 21 S 0.10 0.65 23.42 -107.50 -2.52 -1.87 16 22 C 0.26 1.96 8.88 51.68 0.46 2.42 16 23 O -0.43 -2.42 13.64 -18.17 -0.25 -2.67 16 24 N -0.45 -4.52 6.66 -11.34 -0.08 -4.60 16 25 C 0.08 0.93 5.99 -3.48 -0.02 0.91 16 26 C -0.13 -1.72 5.16 -26.38 -0.14 -1.86 16 27 H 0.02 0.63 7.52 -51.93 -0.39 0.24 16 28 H 0.05 1.25 7.16 -51.93 -0.37 0.87 16 29 H -0.01 -0.14 7.88 -51.93 -0.41 -0.55 16 30 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.04 0.80 8.04 -51.93 -0.42 0.38 16 32 H 0.04 0.68 6.27 -51.93 -0.33 0.35 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.15 7.00 -51.93 -0.36 0.78 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.20 1.39 8.02 -52.49 -0.42 0.97 16 41 H 0.41 0.10 9.06 45.56 0.41 0.51 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.14 1.61 4.06 -75.46 -0.31 1.30 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.06 6.50 -51.93 -0.34 0.72 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -34.25 373.29 -8.70 -42.95 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.86 Total: -1.66 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.23 Total: 4.07 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.53 Total: -55.34 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.16 Total: -10.98 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.22 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.52 Total: -1.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.25 -8.70 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319886375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.112 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds