Wall clock time and date at job start Tue Mar 31 2020 23:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 119.99930 * 2 1 4 4 H 1.07999 * 120.00059 * 205.56696 * 3 2 1 5 5 C 1.38818 * 120.00214 * 25.56843 * 3 2 1 6 6 N 1.31614 * 119.99886 * 9.23306 * 5 3 2 7 7 Si 1.86797 * 119.99892 * 189.23631 * 5 3 2 8 8 H 1.48501 * 109.47195 * 94.93309 * 7 5 3 9 9 H 1.48497 * 109.46867 * 214.93081 * 7 5 3 10 10 H 1.48504 * 109.47405 * 334.92791 * 7 5 3 11 11 C 1.46503 * 119.99912 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.46764 * 269.99920 * 11 2 1 13 13 C 1.52998 * 109.47111 * 180.02562 * 12 11 2 14 14 C 1.53038 * 109.46155 * 174.99772 * 13 12 11 15 15 C 1.53195 * 109.31003 * 181.37164 * 14 13 12 16 16 N 1.46920 * 108.77631 * 305.36215 * 15 14 13 17 17 C 1.34774 * 120.63361 * 233.58950 * 16 15 14 18 18 O 1.21639 * 120.00237 * 8.04667 * 17 16 15 19 19 C 1.47184 * 120.00245 * 188.05570 * 17 16 15 20 20 C 1.35089 * 122.48697 * 188.27766 * 19 17 16 21 21 S 1.76196 * 108.21881 * 179.97438 * 20 19 17 22 22 C 1.76058 * 90.15730 * 359.97438 * 21 20 19 23 23 O 1.35492 * 125.17777 * 179.97438 * 22 21 20 24 24 N 1.29250 * 109.63914 * 0.02562 * 22 21 20 25 25 C 1.46931 * 118.73931 * 53.86709 * 16 15 14 26 26 C 1.53045 * 109.44771 * 295.06278 * 13 12 11 27 27 H 1.09000 * 109.47354 * 271.36999 * 1 2 3 28 28 H 1.09000 * 109.47299 * 31.36612 * 1 2 3 29 29 H 1.08997 * 109.47454 * 151.36889 * 1 2 3 30 30 H 0.96998 * 120.00361 * 180.02562 * 6 5 3 31 31 H 1.08999 * 109.47181 * 149.99706 * 11 2 1 32 32 H 1.08999 * 109.46828 * 29.99853 * 11 2 1 33 33 H 1.08999 * 109.47446 * 59.99948 * 12 11 2 34 34 H 1.09006 * 109.46770 * 299.99720 * 12 11 2 35 35 H 1.08998 * 109.45971 * 55.02379 * 13 12 11 36 36 H 1.09000 * 109.49649 * 61.42350 * 14 13 12 37 37 H 1.08994 * 109.52295 * 301.34007 * 14 13 12 38 38 H 1.09004 * 109.58308 * 185.58170 * 15 14 13 39 39 H 1.09000 * 109.70476 * 65.22624 * 15 14 13 40 40 H 1.08000 * 125.89428 * 359.97438 * 20 19 17 41 41 H 0.96702 * 114.00121 * 269.99856 * 23 22 21 42 42 H 1.08993 * 109.59102 * 65.92026 * 25 16 15 43 43 H 1.09003 * 109.58760 * 186.35521 * 25 16 15 44 44 H 1.09005 * 109.49217 * 298.56806 * 26 13 12 45 45 H 1.08994 * 109.49707 * 58.66772 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1503 1.2317 -0.4036 5 6 1.5575 2.3292 0.5188 6 7 0.4186 2.2417 1.1726 7 14 2.3772 3.9919 0.2891 8 1 1.8057 4.6649 -0.9049 9 1 2.1400 4.8310 1.4911 10 1 3.8377 3.8018 0.0986 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7110 1.4418 13 6 3.2180 -3.0357 1.4413 14 6 3.5818 -3.4149 2.8786 15 6 4.3777 -4.7238 2.8712 16 7 3.6011 -5.7454 2.1558 17 6 3.3327 -6.9333 2.7332 18 8 3.6047 -7.1155 3.9047 19 6 2.7105 -8.0103 1.9462 20 6 2.2711 -9.1580 2.5072 21 16 1.5992 -10.1721 1.2326 22 6 1.9786 -8.9335 0.0403 23 8 1.7244 -9.0241 -1.2874 24 7 2.5377 -7.9251 0.6244 25 6 3.1278 -5.4499 0.7966 26 6 2.3412 -4.1307 0.8293 27 1 -0.3634 0.0246 1.0274 28 1 -0.3634 0.8775 -0.5349 29 1 -0.3634 -0.9020 -0.4924 30 1 0.0046 3.0406 1.5348 31 1 3.1499 -1.1382 -0.5144 32 1 1.6083 -2.0281 -0.5147 33 1 1.5000 -1.8415 1.9556 34 1 3.0416 -0.9515 1.9559 35 1 4.1289 -2.9285 0.8523 36 1 2.6705 -3.5465 3.4619 37 1 4.1865 -2.6239 3.3220 38 1 4.5539 -5.0501 3.8962 39 1 5.3320 -4.5709 2.3673 40 1 2.3227 -9.4104 3.5560 41 1 2.4446 -9.4160 -1.8000 42 1 3.9811 -5.3531 0.1255 43 1 2.4789 -6.2553 0.4524 44 1 1.4415 -4.2555 1.4320 45 1 2.0632 -3.8490 -0.1862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319886375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:20 Heat of formation + Delta-G solvation = -16.109148 kcal Electronic energy + Delta-G solvation = -27225.890011 eV Core-core repulsion = 23371.034551 eV Total energy + Delta-G solvation = -3854.855460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90035 -40.25567 -39.07243 -38.08213 -37.47770 -35.17831 -33.17470 -32.14821 -31.17212 -30.20293 -27.92567 -27.29698 -26.05181 -24.28609 -24.17599 -22.97160 -21.78884 -21.15092 -20.64574 -19.68232 -19.14154 -18.69626 -17.38126 -17.16672 -16.90835 -16.73730 -16.34737 -15.83847 -15.59837 -15.39936 -15.16439 -15.10858 -14.96674 -14.56162 -14.35579 -14.08271 -13.92177 -13.62417 -13.27083 -13.09316 -12.85859 -12.82758 -12.73537 -12.58000 -12.41794 -12.19172 -12.11491 -12.04461 -11.76977 -11.60714 -11.37188 -11.35807 -11.13448 -10.70355 -10.62404 -10.14592 -9.99769 -9.62224 -8.71903 -7.82345 -5.31929 -0.68382 -0.10126 0.34195 0.69631 1.46062 1.46667 1.56291 1.95319 2.09505 2.43716 2.51668 3.32005 3.45071 3.66729 3.82115 3.92408 3.99278 4.05893 4.09372 4.17911 4.37191 4.41848 4.47942 4.60436 4.64402 4.76362 4.79892 4.87994 4.89829 4.96173 5.05897 5.08225 5.20091 5.22314 5.31190 5.35257 5.48861 5.58788 5.64228 5.66739 5.72710 6.10110 6.32837 6.37103 6.41225 6.96775 7.17390 7.90056 8.35148 9.22274 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.002286 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.735080 B =12247.755362 C =13044.805341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.623 5.623 3 C -0.259 4.259 4 H 0.070 0.930 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.969 3.031 8 H -0.286 1.286 9 H -0.296 1.296 10 H -0.266 1.266 11 C 0.151 3.849 12 C -0.114 4.114 13 C -0.075 4.075 14 C -0.122 4.122 15 C 0.114 3.886 16 N -0.591 5.591 17 C 0.584 3.416 18 O -0.572 6.572 19 C 0.004 3.996 20 C -0.169 4.169 21 S 0.173 5.827 22 C 0.255 3.745 23 O -0.434 6.434 24 N -0.475 5.475 25 C 0.085 3.915 26 C -0.123 4.123 27 H -0.004 1.004 28 H 0.019 0.981 29 H 0.027 0.973 30 H 0.247 0.753 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.034 0.966 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.203 0.797 41 H 0.434 0.566 42 H 0.077 0.923 43 H 0.142 0.858 44 H 0.046 0.954 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.993 -30.203 -2.981 30.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.347 5.347 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.798 3.202 8 H -0.213 1.213 9 H -0.223 1.223 10 H -0.191 1.191 11 C 0.026 3.974 12 C -0.155 4.155 13 C -0.095 4.095 14 C -0.160 4.160 15 C -0.008 4.008 16 N -0.321 5.321 17 C 0.371 3.629 18 O -0.453 6.453 19 C -0.127 4.127 20 C -0.310 4.310 21 S 0.422 5.578 22 C -0.064 4.064 23 O -0.245 6.245 24 N -0.203 5.203 25 C -0.037 4.037 26 C -0.161 4.161 27 H 0.014 0.986 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.220 0.780 41 H 0.297 0.703 42 H 0.095 0.905 43 H 0.159 0.841 44 H 0.065 0.935 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.199 -30.508 -2.673 31.063 hybrid contribution 0.732 2.037 0.600 2.246 sum 5.930 -28.471 -2.073 29.155 Atomic orbital electron populations 1.20494 0.83176 0.96102 0.96895 1.44247 1.02055 1.02101 1.86256 1.19552 0.99842 0.87297 1.32219 0.91200 1.25895 0.98645 1.02230 0.98381 1.70227 1.20318 1.27943 1.40401 0.85212 0.78608 0.79829 0.76597 1.21299 1.22283 1.19058 1.21052 0.95533 0.86358 0.94492 1.21997 0.98349 0.95713 0.99403 1.21081 0.98801 0.93586 0.96004 1.21889 1.00109 0.96854 0.97166 1.21701 0.94204 0.86660 0.98198 1.48065 1.52613 1.13785 1.17663 1.17479 0.78000 0.81985 0.85452 1.90781 1.55838 1.82168 1.16464 1.19715 1.07437 0.96998 0.88523 1.27379 1.00920 0.96361 1.06388 1.85226 1.56359 1.18264 0.97967 1.25478 0.98888 0.91048 0.90950 1.84844 1.45435 1.83442 1.10770 1.66702 1.18580 1.25967 1.09062 1.22980 1.00446 0.99207 0.81108 1.22055 0.97923 0.94378 1.01776 0.98617 0.96210 0.95437 0.94416 0.93458 0.92428 0.95196 0.94688 0.90057 0.93392 0.90255 0.89875 0.89393 0.78010 0.70278 0.90463 0.84130 0.93548 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.23 9.01 127.77 1.15 10.39 16 2 N -0.62 -32.31 2.92 -726.94 -2.12 -34.43 16 3 C -0.26 -14.55 9.64 84.04 0.81 -13.74 16 4 H 0.07 3.80 7.84 -2.91 -0.02 3.77 16 5 C -0.06 -3.28 5.14 84.86 0.44 -2.84 16 6 N -0.94 -57.53 10.69 21.65 0.23 -57.30 16 7 Si 0.97 46.04 29.56 68.60 2.03 48.07 16 8 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 9 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 C 0.15 6.13 5.47 86.38 0.47 6.60 16 12 C -0.11 -4.33 5.01 30.59 0.15 -4.18 16 13 C -0.08 -2.12 2.15 -10.77 -0.02 -2.14 16 14 C -0.12 -3.26 5.36 30.67 0.16 -3.10 16 15 C 0.11 2.74 6.44 86.36 0.56 3.30 16 16 N -0.59 -14.70 2.97 -822.20 -2.44 -17.14 16 17 C 0.58 15.48 7.64 86.59 0.66 16.14 16 18 O -0.57 -18.01 16.12 -4.15 -0.07 -18.08 16 19 C 0.00 0.09 6.45 40.50 0.26 0.35 16 20 C -0.17 -2.59 10.84 67.09 0.73 -1.86 16 21 S 0.17 1.67 23.42 -56.49 -1.32 0.34 16 22 C 0.26 3.30 8.88 130.62 1.16 4.46 16 23 O -0.43 -3.68 13.64 -87.93 -1.20 -4.88 16 24 N -0.48 -8.72 6.66 -304.24 -2.03 -10.75 16 25 C 0.08 1.89 5.99 86.51 0.52 2.41 16 26 C -0.12 -3.16 5.16 30.82 0.16 -3.00 16 27 H 0.00 -0.25 7.52 -2.39 -0.02 -0.27 16 28 H 0.02 1.08 7.16 -2.39 -0.02 1.06 16 29 H 0.03 1.21 7.88 -2.39 -0.02 1.19 16 30 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 31 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 32 H 0.06 2.08 6.27 -2.39 -0.01 2.07 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 2.13 7.00 -2.38 -0.02 2.11 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.20 2.66 8.02 -2.91 -0.02 2.64 16 41 H 0.43 -1.11 9.06 -74.06 -0.67 -1.79 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.14 3.14 4.06 -48.85 -0.20 2.94 16 44 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.08 2.07 6.50 -2.39 -0.02 2.06 16 Total: -1.00 -74.87 373.29 0.45 -74.42 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.16 Total: 6.96 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 7.21 Total: 12.78 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -6.36 Total: -119.62 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -1.27 Total: -22.95 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.32 Total: 0.34 kcal Total: -74.87 0.45 -74.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319886375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.313 kcal (2) G-P(sol) polarization free energy of solvation -74.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds