Wall clock time and date at job start Tue Mar 31 2020 22:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46964 * 2 1 4 4 C 1.46494 * 120.00402 * 91.59810 * 3 2 1 5 5 C 1.53001 * 109.47636 * 89.99524 * 4 3 2 6 6 N 1.46897 * 109.47005 * 180.02562 * 5 4 3 7 7 C 1.46903 * 110.99883 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47268 * 179.97438 * 7 6 5 9 9 O 1.21292 * 120.00059 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.37095 * 120.00050 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00034 * 359.97438 * 11 10 8 13 13 C 1.38943 * 120.00138 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00013 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00083 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46690 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46815 * 120.00051 * 15 13 11 18 18 H 1.48497 * 109.47368 * 239.99752 * 15 13 11 19 19 C 1.34777 * 119.99662 * 271.59171 * 3 2 1 20 20 O 1.21705 * 119.99603 * 185.82766 * 19 3 2 21 21 C 1.46581 * 120.00280 * 5.82458 * 19 3 2 22 22 C 1.36651 * 125.45848 * 186.91245 * 21 19 3 23 23 C 1.37475 * 113.29514 * 179.97438 * 22 21 19 24 24 C 1.50701 * 122.44801 * 179.97438 * 23 22 21 25 25 C 1.33815 * 115.09877 * 359.97438 * 23 22 21 26 26 S 1.70618 * 110.95864 * 359.76457 * 25 23 22 27 27 H 1.09001 * 109.46904 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47068 * 300.00049 * 1 2 3 29 29 H 1.09002 * 109.46878 * 60.00128 * 1 2 3 30 30 H 1.08998 * 109.46918 * 239.99436 * 2 1 3 31 31 H 1.09002 * 109.46878 * 119.99872 * 2 1 3 32 32 H 1.08999 * 109.47263 * 209.99932 * 4 3 2 33 33 H 1.09004 * 109.46819 * 329.99589 * 4 3 2 34 34 H 1.09001 * 109.46522 * 300.00048 * 5 4 3 35 35 H 1.08995 * 109.47091 * 59.99942 * 5 4 3 36 36 H 1.00901 * 111.00476 * 56.04740 * 6 5 4 37 37 H 1.09000 * 109.47193 * 300.00550 * 7 6 5 38 38 H 1.09005 * 109.46565 * 59.99842 * 7 6 5 39 39 H 0.97001 * 120.00095 * 0.02562 * 10 8 7 40 40 H 0.97006 * 120.00159 * 180.02562 * 14 13 11 41 41 H 1.08000 * 123.35313 * 359.97438 * 22 21 19 42 42 H 1.09001 * 109.46699 * 89.99569 * 24 23 22 43 43 H 1.08997 * 109.47006 * 209.99630 * 24 23 22 44 44 H 1.08999 * 109.47141 * 330.00296 * 24 23 22 45 45 H 1.08002 * 124.51682 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2959 2.0600 1.2681 5 6 3.7519 1.8158 1.6696 6 7 4.0299 2.4960 2.9415 7 6 5.4219 2.2825 3.3595 8 6 5.6693 2.9941 4.6646 9 8 4.7740 3.6174 5.1948 10 7 6.8852 2.9370 5.2433 11 6 7.1102 3.5839 6.4309 12 1 6.3132 4.1396 6.9026 13 6 8.3638 3.5255 7.0272 14 7 9.3337 2.8498 6.4531 15 14 8.6705 4.4076 8.6452 16 1 7.4257 5.0903 9.0804 17 1 9.0801 3.4210 9.6768 18 1 9.7494 5.4118 8.4647 19 6 2.2123 2.0273 -1.1668 20 8 2.7172 3.1346 -1.1725 21 6 1.8154 1.3963 -2.4289 22 6 2.0787 1.8859 -3.6772 23 6 1.5908 1.0908 -4.6871 24 6 1.7645 1.4363 -6.1436 25 6 0.9505 -0.0122 -4.2821 26 16 0.9314 -0.1162 -2.5792 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1256 3.1304 1.1521 33 1 1.6351 1.6688 2.0418 34 1 3.9220 0.7454 1.7856 35 1 4.4126 2.2069 0.8959 36 1 3.3872 2.1970 3.6596 37 1 5.6034 1.2153 3.4868 38 1 6.0945 2.6770 2.5977 39 1 7.6011 2.4383 4.8195 40 1 10.2088 2.8088 6.8696 41 1 2.6164 2.8058 -3.8529 42 1 2.6922 0.9989 -6.5126 43 1 0.9241 1.0403 -6.7136 44 1 1.8030 2.5196 -6.2580 45 1 0.5088 -0.7415 -4.9449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320725239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:16 Heat of formation + Delta-G solvation = -31.075539 kcal Electronic energy + Delta-G solvation = -26058.350618 eV Core-core repulsion = 22202.846167 eV Total energy + Delta-G solvation = -3855.504451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32079 -38.52473 -38.22288 -36.57234 -35.37646 -33.83073 -31.90009 -31.20319 -31.12295 -29.13739 -28.09221 -26.31278 -24.80083 -24.05652 -23.33223 -22.07256 -19.97239 -19.43437 -19.17732 -18.18482 -17.86041 -16.77879 -16.38349 -16.28353 -15.52898 -15.47104 -15.20438 -14.66648 -14.53632 -14.27518 -14.07753 -13.78233 -13.72820 -13.48382 -13.38909 -13.31515 -13.02571 -12.65755 -12.56525 -12.33276 -12.26770 -12.05904 -12.01574 -11.57640 -11.50845 -11.48066 -11.13560 -10.98660 -10.88154 -10.32325 -10.21704 -10.19487 -9.49702 -9.25079 -8.97012 -8.56249 -8.43000 -8.04848 -7.93484 -6.39396 -3.80137 0.19888 1.16354 1.61822 2.03714 2.57908 2.94617 3.18299 3.28665 3.36263 3.93567 4.11103 4.16013 4.35244 4.45688 4.61087 4.64411 4.77470 4.88322 4.96565 4.98148 5.15162 5.19569 5.21507 5.24457 5.26699 5.28433 5.29058 5.44784 5.51356 5.56728 5.73038 5.77517 5.87915 5.94167 5.99614 6.02948 6.08339 6.22474 6.31306 7.03264 7.19929 7.57784 7.66980 7.88114 8.09020 8.63800 9.20339 9.56903 10.08328 10.78474 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026847 B = 0.001767 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.699057 B =15842.119109 C =16316.753103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 N -0.608 5.608 4 C 0.121 3.879 5 C 0.047 3.953 6 N -0.665 5.665 7 C 0.053 3.947 8 C 0.442 3.558 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.588 3.412 20 O -0.517 6.517 21 C -0.271 4.271 22 C -0.049 4.049 23 C -0.119 4.119 24 C -0.096 4.096 25 C -0.271 4.271 26 S 0.236 5.764 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.026 0.974 35 H 0.076 0.924 36 H 0.348 0.652 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.152 0.848 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.936 -12.548 -23.290 31.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.037 4.037 3 N -0.341 5.341 4 C -0.001 4.001 5 C -0.084 4.084 6 N -0.298 5.298 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.376 3.624 20 O -0.394 6.394 21 C -0.391 4.391 22 C -0.083 4.083 23 C -0.132 4.132 24 C -0.155 4.155 25 C -0.408 4.408 26 S 0.506 5.494 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.167 0.833 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.170 0.830 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.545 -12.022 -22.147 31.288 hybrid contribution 1.295 -0.057 -0.388 1.353 sum -17.250 -12.079 -22.535 30.843 Atomic orbital electron populations 1.22461 0.95137 1.03389 1.03261 1.21936 0.95274 0.82830 1.03625 1.47771 1.66185 1.14020 1.06171 1.21446 0.95817 0.99574 0.83295 1.22278 0.96817 0.95868 0.93456 1.59935 1.03915 1.61216 1.04697 1.21659 0.90619 0.98237 0.97458 1.19795 0.84101 0.86328 0.87059 1.90521 1.44002 1.46459 1.65679 1.41868 1.10191 1.46571 1.21479 1.19763 0.97339 1.28008 0.97679 0.87835 1.25269 0.95219 0.97652 0.99893 1.69625 1.03101 1.41643 1.39994 0.85792 0.78540 0.78876 0.81083 1.19206 1.20806 1.20744 1.17032 0.78311 0.84995 0.82102 1.90883 1.42789 1.19377 1.86364 1.24590 1.13648 1.03119 0.97726 1.20668 0.97748 1.00166 0.89706 1.18752 1.01626 0.95385 0.97425 1.20529 1.02188 1.02206 0.90539 1.25849 1.07263 1.03133 1.04536 1.83792 1.50427 1.18426 0.96710 0.90484 0.91155 0.91295 0.89861 0.88608 0.88431 0.90166 0.95614 0.90538 0.83286 0.93893 0.89533 0.77457 0.91948 0.83020 0.91215 0.91637 0.91322 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 8.97 37.16 0.33 -0.67 16 2 C 0.09 0.60 5.62 -4.04 -0.02 0.58 16 3 N -0.61 -6.33 2.47 -175.27 -0.43 -6.77 16 4 C 0.12 1.41 5.62 -4.04 -0.02 1.39 16 5 C 0.05 0.62 6.01 -3.83 -0.02 0.60 16 6 N -0.66 -11.19 6.13 -115.06 -0.70 -11.90 16 7 C 0.05 0.98 6.17 -4.97 -0.03 0.95 16 8 C 0.44 10.72 7.82 -10.98 -0.09 10.63 16 9 O -0.58 -16.15 15.78 5.55 0.09 -16.06 16 10 N -0.56 -14.64 5.29 -10.97 -0.06 -14.69 16 11 C -0.30 -8.47 9.68 -14.94 -0.14 -8.62 16 12 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 15 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.59 7.49 7.62 -12.90 -0.10 7.39 16 20 O -0.52 -8.64 16.49 5.18 0.09 -8.55 16 21 C -0.27 -2.79 6.20 -36.79 -0.23 -3.02 16 22 C -0.05 -0.49 9.80 -40.43 -0.40 -0.88 16 23 C -0.12 -0.95 5.78 -106.45 -0.62 -1.57 16 24 C -0.10 -0.55 10.13 36.01 0.36 -0.19 16 25 C -0.27 -1.86 10.67 29.18 0.31 -1.55 16 26 S 0.24 1.57 15.19 -107.50 -1.63 -0.07 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.43 5.84 -38.07 -0.22 0.20 16 30 H 0.08 0.53 4.66 -23.95 -0.11 0.42 16 31 H 0.10 0.55 8.06 -51.93 -0.42 0.13 16 32 H 0.10 1.37 7.51 -51.93 -0.39 0.98 16 33 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.35 5.73 8.43 -39.29 -0.33 5.40 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 44 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 45 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -34.62 386.15 -8.27 -42.89 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -6.37 Total: 11.67 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.75 Total: 5.53 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.47 Total: -57.54 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.17 Total: -24.61 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.63 Total: -0.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.62 -8.27 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320725239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.815 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds