Wall clock time and date at job start Tue Mar 31 2020 22:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46964 * 2 1 4 4 C 1.46494 * 120.00402 * 91.59810 * 3 2 1 5 5 C 1.53001 * 109.47636 * 89.99524 * 4 3 2 6 6 N 1.46897 * 109.47005 * 180.02562 * 5 4 3 7 7 C 1.46903 * 110.99883 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47268 * 179.97438 * 7 6 5 9 9 O 1.21292 * 120.00059 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.37095 * 120.00050 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00034 * 359.97438 * 11 10 8 13 13 C 1.38943 * 120.00138 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00013 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00083 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46690 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46815 * 120.00051 * 15 13 11 18 18 H 1.48497 * 109.47368 * 239.99752 * 15 13 11 19 19 C 1.34777 * 119.99662 * 271.59171 * 3 2 1 20 20 O 1.21705 * 119.99603 * 185.82766 * 19 3 2 21 21 C 1.46581 * 120.00280 * 5.82458 * 19 3 2 22 22 C 1.36651 * 125.45848 * 186.91245 * 21 19 3 23 23 C 1.37475 * 113.29514 * 179.97438 * 22 21 19 24 24 C 1.50701 * 122.44801 * 179.97438 * 23 22 21 25 25 C 1.33815 * 115.09877 * 359.97438 * 23 22 21 26 26 S 1.70618 * 110.95864 * 359.76457 * 25 23 22 27 27 H 1.09001 * 109.46904 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47068 * 300.00049 * 1 2 3 29 29 H 1.09002 * 109.46878 * 60.00128 * 1 2 3 30 30 H 1.08998 * 109.46918 * 239.99436 * 2 1 3 31 31 H 1.09002 * 109.46878 * 119.99872 * 2 1 3 32 32 H 1.08999 * 109.47263 * 209.99932 * 4 3 2 33 33 H 1.09004 * 109.46819 * 329.99589 * 4 3 2 34 34 H 1.09001 * 109.46522 * 300.00048 * 5 4 3 35 35 H 1.08995 * 109.47091 * 59.99942 * 5 4 3 36 36 H 1.00901 * 111.00476 * 56.04740 * 6 5 4 37 37 H 1.09000 * 109.47193 * 300.00550 * 7 6 5 38 38 H 1.09005 * 109.46565 * 59.99842 * 7 6 5 39 39 H 0.97001 * 120.00095 * 0.02562 * 10 8 7 40 40 H 0.97006 * 120.00159 * 180.02562 * 14 13 11 41 41 H 1.08000 * 123.35313 * 359.97438 * 22 21 19 42 42 H 1.09001 * 109.46699 * 89.99569 * 24 23 22 43 43 H 1.08997 * 109.47006 * 209.99630 * 24 23 22 44 44 H 1.08999 * 109.47141 * 330.00296 * 24 23 22 45 45 H 1.08002 * 124.51682 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2959 2.0600 1.2681 5 6 3.7519 1.8158 1.6696 6 7 4.0299 2.4960 2.9415 7 6 5.4219 2.2825 3.3595 8 6 5.6693 2.9941 4.6646 9 8 4.7740 3.6174 5.1948 10 7 6.8852 2.9370 5.2433 11 6 7.1102 3.5839 6.4309 12 1 6.3132 4.1396 6.9026 13 6 8.3638 3.5255 7.0272 14 7 9.3337 2.8498 6.4531 15 14 8.6705 4.4076 8.6452 16 1 7.4257 5.0903 9.0804 17 1 9.0801 3.4210 9.6768 18 1 9.7494 5.4118 8.4647 19 6 2.2123 2.0273 -1.1668 20 8 2.7172 3.1346 -1.1725 21 6 1.8154 1.3963 -2.4289 22 6 2.0787 1.8859 -3.6772 23 6 1.5908 1.0908 -4.6871 24 6 1.7645 1.4363 -6.1436 25 6 0.9505 -0.0122 -4.2821 26 16 0.9314 -0.1162 -2.5792 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1256 3.1304 1.1521 33 1 1.6351 1.6688 2.0418 34 1 3.9220 0.7454 1.7856 35 1 4.4126 2.2069 0.8959 36 1 3.3872 2.1970 3.6596 37 1 5.6034 1.2153 3.4868 38 1 6.0945 2.6770 2.5977 39 1 7.6011 2.4383 4.8195 40 1 10.2088 2.8088 6.8696 41 1 2.6164 2.8058 -3.8529 42 1 2.6922 0.9989 -6.5126 43 1 0.9241 1.0403 -6.7136 44 1 1.8030 2.5196 -6.2580 45 1 0.5088 -0.7415 -4.9449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320725239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:15 Heat of formation + Delta-G solvation = -56.251553 kcal Electronic energy + Delta-G solvation = -26059.442332 eV Core-core repulsion = 22202.846167 eV Total energy + Delta-G solvation = -3856.596165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21234 -40.17309 -39.11375 -37.61251 -36.63364 -35.83562 -33.31539 -32.70005 -31.77739 -30.19265 -28.67699 -27.80147 -26.13598 -25.08526 -24.25616 -23.08305 -21.20351 -20.60522 -20.08881 -19.91441 -18.90636 -17.91751 -17.60096 -17.22045 -16.95958 -16.47505 -16.38445 -16.11607 -15.75981 -15.38425 -15.32765 -14.96976 -14.72380 -14.62114 -14.32666 -14.00543 -13.93854 -13.80167 -13.50667 -13.37299 -13.19125 -13.12952 -12.94864 -12.78568 -12.77638 -12.68582 -12.41614 -12.14674 -12.11514 -12.08946 -11.52752 -11.46502 -11.18048 -10.41540 -10.04287 -10.03306 -9.67890 -9.39143 -9.09626 -8.47934 -5.97038 -0.49102 0.53187 1.04487 1.34936 1.36255 1.41558 1.56170 1.74726 2.02349 2.09514 2.29017 2.94791 3.19004 3.42130 3.53123 3.84629 3.96019 4.04146 4.10628 4.19906 4.23251 4.28309 4.39657 4.41928 4.44656 4.45495 4.55909 4.70262 4.72599 4.79305 4.84041 4.90118 4.92724 4.96419 5.05650 5.32432 5.38039 5.40292 5.42911 5.50629 5.82031 6.04555 6.20126 6.39366 6.58004 6.97300 7.10807 7.53686 8.08669 8.69744 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026847 B = 0.001767 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.699057 B =15842.119109 C =16316.753103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 N -0.603 5.603 4 C 0.126 3.874 5 C 0.056 3.944 6 N -0.682 5.682 7 C 0.068 3.932 8 C 0.438 3.562 9 O -0.621 6.621 10 N -0.573 5.573 11 C -0.335 4.335 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.995 3.005 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.272 1.272 19 C 0.581 3.419 20 O -0.575 6.575 21 C -0.310 4.310 22 C -0.062 4.062 23 C -0.137 4.137 24 C -0.095 4.095 25 C -0.267 4.267 26 S 0.307 5.693 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.351 0.649 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.135 0.865 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.940 -15.359 -23.791 34.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 N -0.334 5.334 4 C 0.003 3.997 5 C -0.074 4.074 6 N -0.316 5.316 7 C -0.065 4.065 8 C 0.226 3.774 9 O -0.508 6.508 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.819 3.181 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.197 1.197 19 C 0.370 3.630 20 O -0.456 6.456 21 C -0.430 4.430 22 C -0.097 4.097 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.404 4.404 26 S 0.579 5.421 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.170 0.830 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.153 0.847 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -19.559 -14.899 -22.665 33.440 hybrid contribution 1.543 0.739 -0.282 1.734 sum -18.016 -14.160 -22.947 32.429 Atomic orbital electron populations 1.22465 0.93763 1.05062 1.02768 1.22270 0.96403 0.80667 1.04972 1.47846 1.65325 1.15265 1.04987 1.21299 0.95365 0.98372 0.84616 1.22207 0.97391 0.96784 0.91016 1.59865 1.03055 1.62729 1.05903 1.21495 0.91918 0.99009 0.94069 1.20796 0.82919 0.85406 0.88317 1.90488 1.45028 1.48043 1.67235 1.41933 1.10996 1.46808 1.21241 1.19730 0.97611 1.29729 0.99341 0.90223 1.26079 0.94454 0.97893 1.02940 1.69684 1.03479 1.41812 1.41175 0.84839 0.78177 0.78016 0.77091 1.19759 1.19369 1.19709 1.17484 0.77545 0.84503 0.83425 1.90837 1.45590 1.21897 1.87307 1.24536 1.16016 1.05891 0.96574 1.20763 0.98119 1.00200 0.90588 1.18886 1.02255 0.95719 0.97978 1.20565 1.03114 1.02219 0.89471 1.26298 1.05758 1.02861 1.05489 1.83369 1.47884 1.14835 0.96051 0.87624 0.91380 0.92130 0.89177 0.86589 0.91509 0.87360 0.92933 0.92738 0.82992 0.90938 0.88741 0.76975 0.91261 0.84712 0.90722 0.90050 0.91658 0.79282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 8.97 71.98 0.65 -0.79 16 2 C 0.08 0.89 5.62 86.38 0.49 1.37 16 3 N -0.60 -12.21 2.47 -826.64 -2.04 -14.25 16 4 C 0.13 2.91 5.62 86.38 0.49 3.40 16 5 C 0.06 1.46 6.01 86.30 0.52 1.98 16 6 N -0.68 -22.71 6.13 -517.93 -3.17 -25.89 16 7 C 0.07 2.45 6.17 85.56 0.53 2.98 16 8 C 0.44 21.56 7.82 87.66 0.69 22.24 16 9 O -0.62 -35.33 15.78 -3.07 -0.05 -35.38 16 10 N -0.57 -30.19 5.29 -306.99 -1.62 -31.82 16 11 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 12 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 13 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 14 N -0.92 -50.42 13.05 21.66 0.28 -50.13 16 15 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 C 0.58 15.41 7.62 86.42 0.66 16.07 16 20 O -0.57 -20.84 16.49 -4.36 -0.07 -20.92 16 21 C -0.31 -6.42 6.20 24.08 0.15 -6.27 16 22 C -0.06 -1.27 9.80 21.72 0.21 -1.06 16 23 C -0.14 -2.04 5.78 -21.05 -0.12 -2.17 16 24 C -0.10 -1.00 10.13 71.24 0.72 -0.27 16 25 C -0.27 -2.94 10.67 66.81 0.71 -2.22 16 26 S 0.31 3.30 15.19 -56.49 -0.86 2.44 16 27 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.60 5.84 -11.20 -0.07 0.53 16 30 H 0.09 0.88 4.66 -20.18 -0.09 0.78 16 31 H 0.12 0.88 8.06 -2.39 -0.02 0.86 16 32 H 0.07 1.98 7.51 -2.39 -0.02 1.96 16 33 H 0.11 1.87 8.07 -2.38 -0.02 1.85 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.35 11.33 8.43 -89.69 -0.76 10.57 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 39 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 40 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 41 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 44 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 45 H 0.19 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -78.42 386.15 0.86 -77.56 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -0.60 Total: 36.43 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.96 Total: 16.36 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -6.56 Total: -122.09 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -0.12 Total: -56.29 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -0.86 Total: 2.44 kcal Total: -78.42 0.86 -77.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320725239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.309 kcal (2) G-P(sol) polarization free energy of solvation -78.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds