Wall clock time and date at job start Tue Mar 31 2020 23:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99681 * 2 1 4 4 H 1.07999 * 119.99616 * 149.27167 * 3 2 1 5 5 C 1.38811 * 120.00141 * 328.98899 * 3 2 1 6 6 N 1.31617 * 120.00072 * 168.21139 * 5 3 2 7 7 Si 1.86796 * 120.00174 * 348.21122 * 5 3 2 8 8 H 1.48497 * 109.47363 * 84.28031 * 7 5 3 9 9 H 1.48494 * 109.47495 * 204.28373 * 7 5 3 10 10 H 1.48503 * 109.47133 * 324.28291 * 7 5 3 11 11 C 1.46495 * 120.00201 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.47145 * 269.99913 * 11 2 1 13 13 H 1.08994 * 109.46896 * 304.99825 * 12 11 2 14 14 O 1.42908 * 109.46980 * 64.99480 * 12 11 2 15 15 C 1.52999 * 109.47250 * 184.99515 * 12 11 2 16 16 N 1.46500 * 109.47139 * 180.02562 * 15 12 11 17 17 C 1.46504 * 119.99826 * 270.00646 * 16 15 12 18 18 C 1.34777 * 120.00039 * 90.00287 * 16 15 12 19 19 O 1.21622 * 119.99957 * 355.08684 * 18 16 15 20 20 C 1.47270 * 119.99929 * 175.08924 * 18 16 15 21 21 N 1.33564 * 123.13940 * 3.56989 * 20 18 16 22 22 C 1.28642 * 115.76393 * 179.97438 * 21 20 18 23 23 S 1.70781 * 110.55986 * 359.97438 * 22 21 20 24 24 C 1.35196 * 123.14064 * 183.27787 * 20 18 16 25 25 C 1.50704 * 125.58721 * 0.02562 * 24 20 18 26 26 C 1.52999 * 117.49826 * 188.74819 * 25 24 20 27 27 C 1.52995 * 117.50293 * 120.08472 * 25 24 20 28 28 H 1.09002 * 109.46988 * 95.51064 * 1 2 3 29 29 H 1.08999 * 109.47200 * 215.51127 * 1 2 3 30 30 H 1.09004 * 109.47336 * 335.51052 * 1 2 3 31 31 H 0.96995 * 120.00491 * 180.02562 * 6 5 3 32 32 H 1.09004 * 109.46804 * 29.99749 * 11 2 1 33 33 H 1.08994 * 109.47323 * 149.99624 * 11 2 1 34 34 H 0.96703 * 113.99468 * 60.00817 * 14 12 11 35 35 H 1.08994 * 109.47425 * 299.99987 * 15 12 11 36 36 H 1.09001 * 109.46702 * 60.00363 * 15 12 11 37 37 H 1.08997 * 109.47350 * 95.22490 * 17 16 15 38 38 H 1.09000 * 109.46841 * 215.22703 * 17 16 15 39 39 H 1.08997 * 109.47026 * 335.22475 * 17 16 15 40 40 H 1.07995 * 124.72439 * 180.02562 * 22 21 20 41 41 H 1.09000 * 115.54968 * 334.41354 * 25 24 20 42 42 H 1.08992 * 117.50226 * 359.97438 * 26 25 24 43 43 H 1.09007 * 117.49689 * 145.01872 * 26 25 24 44 44 H 1.08999 * 117.50218 * 214.98087 * 27 25 24 45 45 H 1.09001 * 117.49596 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1159 1.2516 0.4779 5 6 1.6043 2.3022 -0.6193 6 7 2.1391 3.4892 -0.4259 7 14 0.1115 2.1197 -1.7273 8 1 -1.1225 2.1327 -0.9014 9 1 0.0720 3.2461 -2.6941 10 1 0.1983 0.8351 -2.4673 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 1 2.9643 -0.9139 1.9811 14 8 1.2060 -1.9943 2.0806 15 6 3.3238 -2.9687 1.4430 16 7 3.5675 -3.3925 2.8241 17 6 4.7317 -2.8821 3.5523 18 6 2.7206 -4.2519 3.4246 19 8 1.7070 -4.6060 2.8533 20 6 3.0225 -4.7621 4.7727 21 7 4.0797 -4.3630 5.4847 22 6 4.2069 -4.9009 6.6463 23 16 2.9368 -6.0045 6.9386 24 6 2.2523 -5.6741 5.4075 25 6 0.9970 -6.2987 4.8549 26 6 0.1563 -7.1540 5.8049 27 6 0.9755 -7.8203 4.6968 28 1 -0.3633 -0.0987 -1.0229 29 1 -0.3633 -0.8365 0.5969 30 1 -0.3634 0.9352 0.4260 31 1 1.7579 4.2692 -0.8584 32 1 1.6084 -2.0281 -0.5147 33 1 3.1499 -1.1381 -0.5144 34 1 0.6955 -2.6956 1.6531 35 1 2.8121 -3.7657 0.9037 36 1 4.2746 -2.7525 0.9558 37 1 4.4376 -2.0181 4.1481 38 1 5.1198 -3.6610 4.2087 39 1 5.5041 -2.5876 2.8419 40 1 5.0053 -4.6841 7.3405 41 1 0.4673 -5.7076 4.1078 42 1 0.5112 -7.2653 6.8294 43 1 -0.9266 -7.1259 5.6825 44 1 0.4315 -8.2303 3.8459 45 1 1.8692 -8.3697 4.9928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332662758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:31 Heat of formation + Delta-G solvation = 36.324299 kcal Electronic energy + Delta-G solvation = -27750.010521 eV Core-core repulsion = 23897.428746 eV Total energy + Delta-G solvation = -3852.581775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89847 -38.90540 -37.60724 -37.19037 -35.35860 -34.58410 -31.53829 -30.83794 -30.09507 -27.34405 -26.65386 -25.83531 -25.15141 -22.91646 -22.67306 -22.33456 -21.33337 -20.52891 -19.11640 -18.34163 -16.90805 -16.71115 -16.34355 -16.12858 -15.71679 -15.31693 -15.18274 -14.83225 -14.64274 -14.48803 -14.34585 -13.80111 -13.45886 -13.30813 -12.81876 -12.75628 -12.58227 -12.38337 -12.22307 -12.09001 -12.03783 -11.91499 -11.48299 -11.35439 -11.20340 -10.89402 -10.63722 -10.44380 -10.12604 -10.01325 -9.91821 -9.74511 -9.63802 -9.55044 -9.42768 -9.12366 -8.65705 -8.28127 -6.75917 -5.88390 -3.31839 0.22010 0.88104 1.30237 1.80590 3.07742 3.31131 3.40338 3.51526 3.54956 3.59684 3.85093 4.16313 4.46612 4.58846 4.64225 4.67547 4.87777 4.94720 5.05643 5.22723 5.25678 5.33853 5.37491 5.43197 5.48506 5.54008 5.60970 5.72357 5.75611 5.86795 5.95777 5.98560 6.01943 6.20032 6.41421 6.48184 6.61471 6.66091 6.77222 6.87117 7.10065 7.47214 8.06705 8.22188 8.33014 8.40858 9.01333 9.78305 10.14421 11.28011 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.002691 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.493777 B =10403.702379 C =11149.771262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.604 5.604 3 C -0.263 4.263 4 H 0.082 0.918 5 C 0.023 3.977 6 N -0.917 5.917 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.308 1.308 10 H -0.275 1.275 11 C 0.127 3.873 12 C 0.072 3.928 13 H 0.097 0.903 14 O -0.547 6.547 15 C 0.083 3.917 16 N -0.589 5.589 17 C 0.065 3.935 18 C 0.598 3.402 19 O -0.530 6.530 20 C 0.006 3.994 21 N -0.429 5.429 22 C -0.012 4.012 23 S 0.195 5.805 24 C -0.148 4.148 25 C -0.086 4.086 26 C -0.178 4.178 27 C -0.161 4.161 28 H 0.008 0.992 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.262 0.738 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.364 0.636 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.205 0.795 41 H 0.152 0.848 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -25.240 15.534 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.327 5.327 3 C -0.391 4.391 4 H 0.100 0.900 5 C -0.175 4.175 6 N -0.560 5.560 7 Si 0.738 3.262 8 H -0.215 1.215 9 H -0.237 1.237 10 H -0.201 1.201 11 C -0.001 4.001 12 C 0.009 3.991 13 H 0.115 0.885 14 O -0.351 6.351 15 C -0.041 4.041 16 N -0.319 5.319 17 C -0.078 4.078 18 C 0.384 3.616 19 O -0.408 6.408 20 C -0.128 4.128 21 N -0.143 5.143 22 C -0.311 4.311 23 S 0.451 5.549 24 C -0.272 4.272 25 C -0.107 4.107 26 C -0.215 4.215 27 C -0.199 4.199 28 H 0.026 0.974 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.211 0.789 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.221 0.779 41 H 0.170 0.830 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.454 -24.945 16.236 29.964 hybrid contribution -0.819 0.291 -1.685 1.896 sum 2.635 -24.655 14.551 28.750 Atomic orbital electron populations 1.21492 0.84890 1.00887 0.97382 1.43900 1.00558 1.01853 1.86412 1.18876 1.04173 0.85983 1.30086 0.90020 1.25343 0.98440 0.95517 0.98249 1.69771 1.42500 0.98069 1.45680 0.86761 0.82868 0.75797 0.80791 1.21540 1.23704 1.20130 1.21369 0.97058 0.88517 0.93198 1.23152 0.84483 0.94392 0.97048 0.88531 1.86584 1.32302 1.59354 1.56850 1.22423 1.01396 0.98712 0.81541 1.47497 1.26220 1.44010 1.14210 1.22466 0.86859 1.01474 0.97037 1.16874 0.82966 0.78694 0.83084 1.90668 1.25378 1.60217 1.64507 1.20386 0.93599 1.00519 0.98256 1.67279 1.18555 1.23834 1.04635 1.28540 1.04286 1.00064 0.98168 1.82773 1.18685 1.40090 1.13324 1.24786 1.01721 1.02030 0.98636 1.20759 0.93276 0.93612 1.03022 1.23167 0.99170 1.03813 0.95366 1.23084 1.02428 0.93234 1.01137 0.97420 0.94250 0.92485 0.92800 0.94032 0.91881 0.78919 0.89989 0.89679 0.92835 0.87133 0.92014 0.77856 0.83035 0.88759 0.87535 0.87652 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.31 8.20 59.85 0.49 2.80 16 2 N -0.60 -14.96 2.64 -181.12 -0.48 -15.43 16 3 C -0.26 -7.58 10.05 -15.06 -0.15 -7.73 16 4 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 5 C 0.02 0.69 5.35 -17.43 -0.09 0.60 16 6 N -0.92 -28.97 13.97 55.49 0.78 -28.19 16 7 Si 0.91 23.74 23.97 -169.99 -4.07 19.66 16 8 H -0.29 -7.34 6.53 56.52 0.37 -6.97 16 9 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 10 H -0.28 -7.06 6.38 56.52 0.36 -6.70 16 11 C 0.13 2.49 5.35 -4.04 -0.02 2.47 16 12 C 0.07 1.30 3.48 -26.73 -0.09 1.21 16 13 H 0.10 2.01 8.14 -51.93 -0.42 1.58 16 14 O -0.55 -10.56 10.79 -48.88 -0.53 -11.09 16 15 C 0.08 1.19 5.18 -4.04 -0.02 1.17 16 16 N -0.59 -8.55 2.83 -182.91 -0.52 -9.07 16 17 C 0.06 0.81 9.69 59.85 0.58 1.39 16 18 C 0.60 9.16 7.22 -12.59 -0.09 9.07 16 19 O -0.53 -8.78 12.24 -8.39 -0.10 -8.88 16 20 C 0.01 0.08 6.53 -84.53 -0.55 -0.47 16 21 N -0.43 -4.84 6.66 -12.36 -0.08 -4.92 16 22 C -0.01 -0.09 12.17 51.43 0.63 0.53 16 23 S 0.19 1.41 21.77 -107.50 -2.34 -0.93 16 24 C -0.15 -1.63 6.04 -35.39 -0.21 -1.85 16 25 C -0.09 -0.91 5.44 -91.77 -0.50 -1.41 16 26 C -0.18 -1.35 10.03 -26.69 -0.27 -1.62 16 27 C -0.16 -1.29 10.24 -26.69 -0.27 -1.57 16 28 H 0.01 0.19 5.29 -51.93 -0.27 -0.09 16 29 H 0.04 0.82 7.03 -51.93 -0.37 0.46 16 30 H 0.06 1.44 5.84 -51.93 -0.30 1.14 16 31 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 32 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 34 H 0.36 6.31 8.31 45.56 0.38 6.68 16 35 H 0.08 1.16 7.49 -51.93 -0.39 0.77 16 36 H 0.08 1.07 7.86 -51.93 -0.41 0.66 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.29 4.95 -52.88 -0.26 1.03 16 39 H 0.06 0.67 7.83 -51.93 -0.41 0.27 16 40 H 0.20 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.15 1.96 6.11 -51.93 -0.32 1.64 16 42 H 0.09 0.61 7.28 -51.93 -0.38 0.24 16 43 H 0.11 0.72 8.14 -51.92 -0.42 0.29 16 44 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -35.31 369.08 -8.09 -43.41 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.73 Total: 5.30 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.58 Total: 4.60 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.30 Total: -57.62 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.63 Total: -19.98 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.07 Total: 19.66 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.34 Total: -0.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.31 -8.09 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332662758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.729 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds