Wall clock time and date at job start Tue Mar 31 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46882 * 2 1 4 4 C 1.34949 * 126.03911 * 124.99708 * 3 2 1 5 5 C 1.35315 * 107.74882 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.04193 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46330 * 35.10709 * 6 5 4 8 8 C 1.53758 * 109.61007 * 155.35777 * 6 5 4 9 9 S 1.81735 * 108.75659 * 177.75136 * 8 6 5 10 10 O 1.42104 * 109.47045 * 189.30639 * 9 8 6 11 11 C 1.81745 * 102.30547 * 305.34467 * 9 8 6 12 12 C 1.53243 * 108.79837 * 54.53871 * 11 9 8 13 13 N 1.46372 * 109.48872 * 302.34743 * 12 11 9 14 14 C 1.34775 * 119.64742 * 245.08483 * 13 12 11 15 15 O 1.21287 * 120.00308 * 174.32148 * 14 13 12 16 16 C 1.50699 * 119.99756 * 354.60307 * 14 13 12 17 17 C 1.53004 * 109.47019 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47022 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00293 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00223 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99639 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00456 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47208 * 90.00012 * 22 20 18 24 24 H 1.48502 * 109.47303 * 210.00123 * 22 20 18 25 25 H 1.48502 * 109.46940 * 329.99834 * 22 20 18 26 26 C 1.39868 * 107.91790 * 0.26445 * 5 4 3 27 27 N 1.30836 * 108.20394 * 359.55471 * 26 5 4 28 28 H 1.08998 * 109.47113 * 60.00493 * 1 2 3 29 29 H 1.09004 * 109.46498 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47105 * 299.99848 * 1 2 3 31 31 H 1.09003 * 109.47706 * 239.99742 * 2 1 3 32 32 H 1.08998 * 109.47113 * 119.99507 * 2 1 3 33 33 H 1.08004 * 126.12274 * 0.02562 * 4 3 2 34 34 H 1.08998 * 109.69850 * 57.91009 * 8 6 5 35 35 H 1.09008 * 109.61830 * 297.53998 * 8 6 5 36 36 H 1.09001 * 109.58140 * 294.74394 * 11 9 8 37 37 H 1.09003 * 109.69654 * 174.40201 * 11 9 8 38 38 H 1.08996 * 109.47002 * 182.34032 * 12 11 9 39 39 H 1.09004 * 109.46777 * 62.35294 * 12 11 9 40 40 H 1.09005 * 109.47277 * 299.99196 * 16 14 13 41 41 H 1.09003 * 109.47650 * 59.99814 * 16 14 13 42 42 H 1.08994 * 109.47236 * 299.99510 * 17 16 14 43 43 H 1.09000 * 109.47404 * 60.00111 * 17 16 14 44 44 H 0.97001 * 119.99613 * 179.97438 * 21 20 18 45 45 H 1.08002 * 125.90153 * 179.73289 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0711 3.2139 0.5464 6 6 3.9545 4.2001 1.2660 7 1 4.8302 3.6837 1.6593 8 6 4.4001 5.3016 0.2901 9 16 5.4077 6.5125 1.1962 10 8 5.6476 7.6428 0.3690 11 6 4.3083 6.9852 2.5640 12 6 3.8705 5.7180 3.3062 13 7 3.2095 4.8075 2.3700 14 6 1.9023 4.5209 2.5293 15 8 1.3229 3.8509 1.7008 16 6 1.1589 5.0383 3.7337 17 6 -0.2977 4.5738 3.6723 18 6 -1.0409 5.0907 4.8771 19 1 -0.5261 5.6908 5.6128 20 6 -2.3782 4.7975 5.0402 21 7 -3.0053 4.0671 4.1441 22 14 -3.2998 5.4387 6.5332 23 1 -3.8844 6.7676 6.2209 24 1 -4.3864 4.4911 6.8890 25 1 -2.3611 5.5673 7.6767 26 6 2.3067 3.4745 -0.5956 27 7 1.6799 2.3750 -0.9276 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.3189 1.4127 1.7359 34 1 3.5245 5.7963 -0.1302 35 1 4.9918 4.8617 -0.5129 36 1 3.4317 7.4977 2.1677 37 1 4.8385 7.6457 3.2501 38 1 3.1772 5.9852 4.1037 39 1 4.7447 5.2273 3.7342 40 1 1.6251 4.6542 4.6411 41 1 1.1924 6.1278 3.7411 42 1 -0.7637 4.9582 2.7651 43 1 -0.3317 3.4844 3.6648 44 1 -3.9461 3.8605 4.2591 45 1 2.2467 4.4192 -1.1156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347433862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:05 Heat of formation + Delta-G solvation = 25.234302 kcal Electronic energy + Delta-G solvation = -28369.245798 eV Core-core repulsion = 24516.183125 eV Total energy + Delta-G solvation = -3853.062673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15679 -39.41272 -36.32792 -35.68069 -34.49113 -33.51822 -32.54581 -30.86560 -30.03465 -29.80156 -28.23950 -25.86811 -23.93083 -23.52385 -23.25720 -21.55336 -20.54332 -19.81857 -18.62786 -17.45137 -17.11477 -16.49351 -15.96547 -15.81961 -15.33773 -15.25516 -15.09815 -14.68137 -14.56930 -14.40881 -13.93890 -13.72195 -13.61674 -13.34567 -13.03905 -12.62734 -12.38506 -12.27419 -12.12830 -12.08990 -11.93327 -11.86354 -11.77965 -11.53239 -11.20378 -11.12032 -10.95808 -10.62071 -10.27901 -10.00202 -9.99045 -9.70397 -9.42384 -9.10737 -8.96590 -8.53111 -8.44077 -8.34695 -7.32711 -5.99081 -4.03573 1.40577 2.29646 2.34397 2.89330 2.94193 3.20703 3.30369 3.36727 3.38683 3.58691 3.62108 4.43881 4.52370 4.65699 4.76768 4.91228 4.95494 5.05758 5.11757 5.13580 5.19847 5.25313 5.36020 5.39081 5.46860 5.54995 5.62652 5.72892 5.77815 5.81671 5.91705 6.17571 6.18332 6.21204 6.35155 6.38536 6.70334 6.87011 7.04537 7.42910 7.68400 7.71199 7.83288 8.03988 8.13652 8.36011 8.79198 9.05251 9.60238 11.11625 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008402 B = 0.004488 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.542991 B = 6237.747349 C = 9089.197267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 N -0.368 5.368 4 C 0.059 3.941 5 C -0.191 4.191 6 C 0.250 3.750 7 H 0.093 0.907 8 C -0.448 4.448 9 S 1.235 4.765 10 O -0.858 6.858 11 C -0.459 4.459 12 C 0.132 3.868 13 N -0.635 5.635 14 C 0.507 3.493 15 O -0.494 6.494 16 C -0.132 4.132 17 C 0.042 3.958 18 C -0.527 4.527 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.889 5.889 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.077 3.923 27 N -0.293 5.293 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.260 0.740 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.001 -5.149 -3.426 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 N -0.151 5.151 4 C -0.087 4.087 5 C -0.204 4.204 6 C 0.145 3.855 7 H 0.111 0.889 8 C -0.586 4.586 9 S 1.435 4.565 10 O -0.853 6.853 11 C -0.598 4.598 12 C 0.008 3.992 13 N -0.372 5.372 14 C 0.297 3.703 15 O -0.366 6.366 16 C -0.172 4.172 17 C 0.004 3.996 18 C -0.565 4.565 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.110 4.110 27 N -0.114 5.114 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.178 0.822 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.141 0.859 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 20.551 -5.956 -4.969 21.966 hybrid contribution -2.179 1.883 0.782 2.984 sum 18.371 -4.073 -4.187 19.277 Atomic orbital electron populations 1.22039 0.93754 1.02217 1.04321 1.21529 0.96260 0.77897 1.02646 1.48264 1.35544 1.09745 1.21578 1.21807 0.96304 0.94757 0.95801 1.19240 1.06749 0.93663 1.00774 1.18756 0.92786 0.89386 0.84568 0.88948 1.28130 1.11626 1.10002 1.08890 1.70214 1.00229 0.94129 0.91975 1.93118 1.76177 1.49699 1.66323 1.28005 1.12716 1.05083 1.13953 1.21176 0.99150 0.87143 0.91760 1.48461 1.10816 1.48136 1.29817 1.21527 0.80639 0.79705 0.88455 1.90832 1.65920 1.36994 1.42827 1.21936 1.00224 1.00941 0.94059 1.18841 0.86615 0.97050 0.97073 1.21215 0.94945 1.32961 1.07393 0.92718 1.25013 0.97736 0.95177 0.96350 1.70002 1.10313 1.37787 1.34679 0.86621 0.79654 0.78705 0.83156 1.20702 1.21221 1.19853 1.23239 0.94681 0.96646 0.96438 1.77163 1.22334 0.97191 1.14686 0.91353 0.91337 0.91279 0.90658 0.89280 0.82242 0.88821 0.85943 0.88945 0.85922 0.87981 0.89694 0.90383 0.90703 0.96168 0.96078 0.93008 0.81926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.10 37.16 0.38 -1.79 16 2 C 0.14 1.60 7.23 -4.04 -0.03 1.57 16 3 N -0.37 -5.55 3.68 -61.36 -0.23 -5.77 16 4 C 0.06 0.82 10.26 -17.22 -0.18 0.64 16 5 C -0.19 -2.66 3.05 -105.06 -0.32 -2.98 16 6 C 0.25 2.58 3.19 -68.76 -0.22 2.36 16 7 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 8 C -0.45 -4.32 5.43 37.55 0.20 -4.12 16 9 S 1.24 10.15 13.71 -107.50 -1.47 8.67 16 10 O -0.86 -13.03 18.14 -35.23 -0.64 -13.67 16 11 C -0.46 -3.91 6.65 37.28 0.25 -3.66 16 12 C 0.13 1.11 6.14 -3.99 -0.02 1.09 16 13 N -0.63 -7.65 2.78 -167.02 -0.46 -8.12 16 14 C 0.51 8.88 7.53 -10.99 -0.08 8.79 16 15 O -0.49 -10.41 10.82 5.55 0.06 -10.35 16 16 C -0.13 -2.54 3.95 -27.88 -0.11 -2.65 16 17 C 0.04 1.10 4.26 -27.88 -0.12 0.98 16 18 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.08 1.26 9.63 -17.37 -0.17 1.09 16 27 N -0.29 -5.16 12.42 30.62 0.38 -4.78 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 34 H 0.09 1.17 7.20 -51.93 -0.37 0.80 16 35 H 0.12 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.95 5.73 -51.93 -0.30 0.65 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 1.35 7.90 -51.93 -0.41 0.94 16 41 H 0.07 1.36 7.64 -51.93 -0.40 0.97 16 42 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.02 0.61 8.10 -51.93 -0.42 0.18 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.16 2.49 7.24 -52.49 -0.38 2.11 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -41.35 375.04 -8.72 -50.06 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.89 Total: 0.46 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.83 Total: -12.12 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.43 Total: -45.24 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.58 Total: -24.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 10.15 SS G_CDS: -1.47 Total: 8.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -41.35 -8.72 -50.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347433862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.299 kcal (2) G-P(sol) polarization free energy of solvation -41.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds