Wall clock time and date at job start Tue Mar 31 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46882 * 2 1 4 4 C 1.34949 * 126.03911 * 124.99708 * 3 2 1 5 5 C 1.35315 * 107.74882 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.04193 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46330 * 35.10709 * 6 5 4 8 8 C 1.53758 * 109.61007 * 155.35777 * 6 5 4 9 9 S 1.81735 * 108.75659 * 177.75136 * 8 6 5 10 10 O 1.42104 * 109.47045 * 189.30639 * 9 8 6 11 11 C 1.81745 * 102.30547 * 305.34467 * 9 8 6 12 12 C 1.53243 * 108.79837 * 54.53871 * 11 9 8 13 13 N 1.46372 * 109.48872 * 302.34743 * 12 11 9 14 14 C 1.34775 * 119.64742 * 245.08483 * 13 12 11 15 15 O 1.21287 * 120.00308 * 174.32148 * 14 13 12 16 16 C 1.50699 * 119.99756 * 354.60307 * 14 13 12 17 17 C 1.53004 * 109.47019 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47022 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00293 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00223 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99639 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00456 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47208 * 90.00012 * 22 20 18 24 24 H 1.48502 * 109.47303 * 210.00123 * 22 20 18 25 25 H 1.48502 * 109.46940 * 329.99834 * 22 20 18 26 26 C 1.39868 * 107.91790 * 0.26445 * 5 4 3 27 27 N 1.30836 * 108.20394 * 359.55471 * 26 5 4 28 28 H 1.08998 * 109.47113 * 60.00493 * 1 2 3 29 29 H 1.09004 * 109.46498 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47105 * 299.99848 * 1 2 3 31 31 H 1.09003 * 109.47706 * 239.99742 * 2 1 3 32 32 H 1.08998 * 109.47113 * 119.99507 * 2 1 3 33 33 H 1.08004 * 126.12274 * 0.02562 * 4 3 2 34 34 H 1.08998 * 109.69850 * 57.91009 * 8 6 5 35 35 H 1.09008 * 109.61830 * 297.53998 * 8 6 5 36 36 H 1.09001 * 109.58140 * 294.74394 * 11 9 8 37 37 H 1.09003 * 109.69654 * 174.40201 * 11 9 8 38 38 H 1.08996 * 109.47002 * 182.34032 * 12 11 9 39 39 H 1.09004 * 109.46777 * 62.35294 * 12 11 9 40 40 H 1.09005 * 109.47277 * 299.99196 * 16 14 13 41 41 H 1.09003 * 109.47650 * 59.99814 * 16 14 13 42 42 H 1.08994 * 109.47236 * 299.99510 * 17 16 14 43 43 H 1.09000 * 109.47404 * 60.00111 * 17 16 14 44 44 H 0.97001 * 119.99613 * 179.97438 * 21 20 18 45 45 H 1.08002 * 125.90153 * 179.73289 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0711 3.2139 0.5464 6 6 3.9545 4.2001 1.2660 7 1 4.8302 3.6837 1.6593 8 6 4.4001 5.3016 0.2901 9 16 5.4077 6.5125 1.1962 10 8 5.6476 7.6428 0.3690 11 6 4.3083 6.9852 2.5640 12 6 3.8705 5.7180 3.3062 13 7 3.2095 4.8075 2.3700 14 6 1.9023 4.5209 2.5293 15 8 1.3229 3.8509 1.7008 16 6 1.1589 5.0383 3.7337 17 6 -0.2977 4.5738 3.6723 18 6 -1.0409 5.0907 4.8771 19 1 -0.5261 5.6908 5.6128 20 6 -2.3782 4.7975 5.0402 21 7 -3.0053 4.0671 4.1441 22 14 -3.2998 5.4387 6.5332 23 1 -3.8844 6.7676 6.2209 24 1 -4.3864 4.4911 6.8890 25 1 -2.3611 5.5673 7.6767 26 6 2.3067 3.4745 -0.5956 27 7 1.6799 2.3750 -0.9276 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.3189 1.4127 1.7359 34 1 3.5245 5.7963 -0.1302 35 1 4.9918 4.8617 -0.5129 36 1 3.4317 7.4977 2.1677 37 1 4.8385 7.6457 3.2501 38 1 3.1772 5.9852 4.1037 39 1 4.7447 5.2273 3.7342 40 1 1.6251 4.6542 4.6411 41 1 1.1924 6.1278 3.7411 42 1 -0.7637 4.9582 2.7651 43 1 -0.3317 3.4844 3.6648 44 1 -3.9461 3.8605 4.2591 45 1 2.2467 4.4192 -1.1156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347433862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:05 Heat of formation + Delta-G solvation = -6.753184 kcal Electronic energy + Delta-G solvation = -28370.632880 eV Core-core repulsion = 24516.183125 eV Total energy + Delta-G solvation = -3854.449755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.25391 -40.60571 -37.47337 -36.73010 -35.72883 -35.28973 -33.70979 -32.53481 -31.12776 -30.86014 -29.25646 -27.73924 -24.92280 -24.65693 -24.34068 -23.11165 -21.62668 -21.03758 -19.79245 -18.82260 -18.17513 -17.86136 -17.24253 -16.95138 -16.50142 -16.45516 -16.18593 -16.03259 -15.54958 -15.53815 -15.06928 -14.96335 -14.75316 -14.63256 -14.22368 -13.95693 -13.77739 -13.62093 -13.34301 -13.15439 -12.99226 -12.96421 -12.87432 -12.80698 -12.64380 -12.48719 -12.35510 -12.20993 -11.89855 -11.57811 -11.36315 -11.29486 -10.91273 -10.76040 -10.59229 -10.10942 -9.54283 -9.26990 -8.49427 -8.19886 -6.34048 0.69186 1.21937 1.39126 1.41445 1.52405 1.61985 1.81880 1.90945 1.93085 2.38651 2.53238 2.82724 3.13235 3.63301 3.74968 3.90737 4.08881 4.13668 4.15678 4.18370 4.23654 4.26989 4.35858 4.46879 4.53973 4.55245 4.59156 4.70275 4.74238 4.78332 4.91898 4.96867 5.11364 5.13678 5.18154 5.25259 5.36258 5.47589 5.64161 5.78751 5.85632 5.91979 6.17054 6.44570 6.52141 6.85997 6.99255 7.36498 7.52386 8.92173 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008402 B = 0.004488 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.542991 B = 6237.747349 C = 9089.197267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 N -0.376 5.376 4 C 0.057 3.943 5 C -0.197 4.197 6 C 0.248 3.752 7 H 0.155 0.845 8 C -0.451 4.451 9 S 1.323 4.677 10 O -0.927 6.927 11 C -0.460 4.460 12 C 0.122 3.878 13 N -0.621 5.621 14 C 0.505 3.495 15 O -0.541 6.541 16 C -0.120 4.120 17 C 0.052 3.948 18 C -0.540 4.540 19 H 0.075 0.925 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.251 1.251 26 C 0.056 3.944 27 N -0.341 5.341 28 H 0.042 0.958 29 H 0.101 0.899 30 H 0.027 0.973 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.196 0.804 34 H 0.056 0.944 35 H 0.141 0.859 36 H 0.057 0.943 37 H 0.154 0.846 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.107 0.893 41 H 0.086 0.914 42 H -0.033 1.033 43 H -0.019 1.019 44 H 0.261 0.739 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.452 -5.380 -0.233 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 N -0.160 5.160 4 C -0.089 4.089 5 C -0.209 4.209 6 C 0.144 3.856 7 H 0.173 0.827 8 C -0.589 4.589 9 S 1.523 4.477 10 O -0.922 6.922 11 C -0.599 4.599 12 C 0.000 4.000 13 N -0.356 5.356 14 C 0.294 3.706 15 O -0.417 6.417 16 C -0.160 4.160 17 C 0.015 3.985 18 C -0.578 4.578 19 H 0.093 0.907 20 C -0.203 4.203 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.174 1.174 26 C -0.131 4.131 27 N -0.163 5.163 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.046 0.954 31 H 0.116 0.884 32 H 0.140 0.860 33 H 0.213 0.787 34 H 0.075 0.925 35 H 0.159 0.841 36 H 0.076 0.924 37 H 0.172 0.828 38 H 0.116 0.884 39 H 0.166 0.834 40 H 0.125 0.875 41 H 0.105 0.895 42 H -0.015 1.015 43 H -0.001 1.001 44 H 0.069 0.931 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 24.073 -6.151 -1.772 24.909 hybrid contribution -3.286 1.936 -0.234 3.821 sum 20.786 -4.215 -2.006 21.304 Atomic orbital electron populations 1.21973 0.95554 1.03261 1.00880 1.21846 0.94729 0.76964 1.05317 1.48580 1.35683 1.10343 1.21356 1.22470 0.95472 0.94989 0.95967 1.19594 1.06712 0.94618 0.99999 1.19201 0.93492 0.88962 0.83934 0.82746 1.28199 1.10608 1.10400 1.09742 1.69344 0.97939 0.91007 0.89393 1.92987 1.78136 1.52694 1.68418 1.28064 1.11564 1.05705 1.14595 1.21656 1.01084 0.86684 0.90602 1.48371 1.08968 1.47722 1.30537 1.21175 0.82441 0.79553 0.87402 1.90850 1.67553 1.39353 1.43988 1.21675 0.96071 1.01578 0.96699 1.18573 0.91280 0.94268 0.94414 1.21739 0.95502 1.32634 1.07933 0.90665 1.26115 0.99114 0.95280 0.99826 1.70196 1.10672 1.39675 1.37353 0.85381 0.78207 0.77775 0.79266 1.20203 1.21201 1.17410 1.23370 0.95512 0.96223 0.97957 1.77053 1.23912 0.98524 1.16839 0.93919 0.88025 0.95411 0.88441 0.85998 0.78673 0.92494 0.84122 0.92406 0.82766 0.88407 0.83391 0.87471 0.89548 1.01493 1.00050 0.93080 0.82834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 10.10 71.98 0.73 -3.66 16 2 C 0.13 2.98 7.23 86.38 0.62 3.60 16 3 N -0.38 -11.48 3.68 -348.05 -1.28 -12.76 16 4 C 0.06 1.50 10.26 83.54 0.86 2.35 16 5 C -0.20 -5.33 3.05 -20.15 -0.06 -5.39 16 6 C 0.25 4.37 3.19 44.52 0.14 4.51 16 7 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 8 C -0.45 -7.98 5.43 72.24 0.39 -7.58 16 9 S 1.32 17.84 13.71 -56.49 -0.77 17.07 16 10 O -0.93 -27.05 18.14 -148.98 -2.70 -29.76 16 11 C -0.46 -6.29 6.65 72.06 0.48 -5.81 16 12 C 0.12 1.48 6.14 86.49 0.53 2.01 16 13 N -0.62 -13.25 2.78 -800.71 -2.23 -15.48 16 14 C 0.51 17.55 7.53 87.66 0.66 18.21 16 15 O -0.54 -23.87 10.82 -3.05 -0.03 -23.90 16 16 C -0.12 -4.59 3.95 29.85 0.12 -4.47 16 17 C 0.05 2.88 4.26 29.85 0.13 3.01 16 18 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 19 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 20 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 21 N -0.94 -60.14 13.29 21.45 0.28 -59.86 16 22 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 26 C 0.06 1.92 9.63 85.24 0.82 2.75 16 27 N -0.34 -12.81 12.42 -57.02 -0.71 -13.52 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.12 1.94 8.07 -2.39 -0.02 1.92 16 33 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.06 1.47 7.20 -2.39 -0.02 1.45 16 35 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.38 5.73 -2.39 -0.01 1.36 16 39 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.11 3.43 7.90 -2.38 -0.02 3.42 16 41 H 0.09 3.07 7.64 -2.39 -0.02 3.05 16 42 H -0.03 -2.16 8.10 -2.39 -0.02 -2.18 16 43 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 44 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.15 5.26 7.24 -2.91 -0.02 5.24 16 Total: -1.00 -101.12 375.04 1.68 -99.44 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.98 Total: 13.12 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 6.11 Total: -20.69 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -3.93 Total: -101.62 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -2.74 Total: -53.66 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 17.84 SS G_CDS: -0.77 Total: 17.07 kcal Total: -101.12 1.68 -99.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347433862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.682 kcal (2) G-P(sol) polarization free energy of solvation -101.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds